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Contents
Contents
Linux Cluster Usage Guide
By Jonathan Poisson
Table of Contents
Contents
The Raw Basics
Logging into the Cluster
Copying files to and from the Cluster
Copying from the Cluster
Using the Cluster - Basic
Understanding the Cluster
Understanding Storage
Understanding the Head Node
Understanding the Compute Nodes
Whats in a Name
Unix Commands
man
apropos
df
du
ls
cd and pwd
cp
rm
screen
Job Submission
A Note On Language
Queue commands - Basic
qstat Basics
qsub Basics
Job Submission - Doing something useful
Getting started - BLAST
Job submission - Requesting resources
Getting Started - Discovering Queues
Requesting Resources - Reference
Requesting Queues
Requesting Walltime
Requesting Multiple Nodes and cpus
Requesting Multiple Nodes and CPUs - Advanced
Explicitly Assigning Slices to Separate Nodes
Explicitly Restricting a Node to a Single Job
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