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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48001 1s5l:b (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48002 1s5l:b (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48003 1s5l:b (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48004 1s5l:b (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48005 1s5l:b (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48006 1s5l:b (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48007 1s5l:c (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    48008 1s5l:c (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    48009 1s5l:c (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    48010 1s5l:c (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    48011 1s5l:c (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    48012 1s5l:c (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    48013 1s5l:c (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    48014 1s5l:c (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    48015 1s5l:c (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    48016 1s5l:c (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    48017 1s5l:c (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    48018 1s5l:c (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    48019 1s5l:c (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    48020 1s5l:c (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    48021 1s5l:d (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48022 1s5l:d (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48023 1s5l:d (3.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48024 1s5l:d (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48025 1s5l:d (3.5) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48026 1s5l:d (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48027 1s5l:d (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48028 1s5l:d (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48029 1s5l:d (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48030 1s5l:e (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    48031 1s5l:f (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    48032 1s5l:h (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    48033 1s5l:h (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    48034 1s5l:h (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    48035 1s5l:h (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    48036 1s5l:i (3.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 14764885
    48037 1s5l:k (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    48038 1s5l:k (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    48039 1s5l:m (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    48040 1s5l:v (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    48041 1s5m:A (0.98) BS01 GLC 5.3.1.5 GO:0000287 ... P15587 15157080
    48042 1s5m:A (0.98) BS02 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    48043 1s5m:A (0.98) BS03 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    48044 1s5n:A (0.95) BS01 XYL 5.3.1.5 GO:0000287 ... P15587 15157080
    48045 1s5n:A (0.95) BS02 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    48046 1s5n:A (0.95) BS03 MN 5.3.1.5 GO:0000287 ... P15587 15157080
    48047 1s5o:A (1.8) BS01 152 2.3.1.137
    2.3.1.7    		 GO:0003997 ... P43155 15099582
    48048 1s5p:A (1.96) BS01 peptide 2.3.1.286 GO:0036054 ... P75960 15019790
    48049 1s5p:A (1.96) BS02 ZN 2.3.1.286 GO:0036054 ... P75960 15019790
    48050 1s5q:B (-1.00) BS01 peptide ? GO:0003714 ... Q60520 15235594
    48051 1s5r:B (-1.00) BS01 peptide ? GO:0003714 ... Q60520 15235594
    48052 1s5s:A (1.4) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48053 1s5s:A (1.4) BS02 PG3 3.4.21.4 GO:0004252 ... P00761 15005618
    48054 1s5x:A (2.4) BS01 HEM ? GO:0004601 ... P80043 15096204
    48055 1s5x:B (2.4) BS01 HEM ? GO:0004601 ... P80044 15096204
    48056 1s5y:A (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    48057 1s5y:B (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    48058 1s5y:C (2.5) BS01 HEM ? GO:0004601 ... P80043 15096204
    48059 1s5y:D (2.5) BS01 HEM ? GO:0004601 ... P80044 15096204
    48060 1s5z:A (2.0) BS01 SON 2.7.4.6 GO:0004550 ... P22887 16787337 PDBbind: -logKd/Ki=3.21, Kd=0.62mM
    48061 1s60:A (3.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    48062 1s61:A (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    48063 1s61:B (2.1) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    48064 1s63:A (1.9) BS01 GLC 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 15248757
    48065 1s63:A (1.9) BS02 FPP 2.5.1.58
    2.5.1.59    		 GO:0004659 ... P49354 15248757 BindingDB: Kd=2.0nM
    48066 1s63:B (1.9) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 15248757
    48067 1s63:B (1.9) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15248757
    48068 1s63:B (1.9) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 15248757
    48069 1s63:B (1.9) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 15248757
    48070 1s63:B (1.9) BS05 778 2.5.1.58 GO:0003824 ... P49356 15248757 MOAD: Ki=0.9nM
    PDBbind: -logKd/Ki=9.05, Ki=0.9nM
    BindingDB: IC50=2nM
    48071 1s64:B (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    48072 1s64:B (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757 PDBbind: -logKd/Ki=8.40, Ki=4nM
    48073 1s64:D (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    48074 1s64:D (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    48075 1s64:F (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    48076 1s64:F (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    48077 1s64:H (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    48078 1s64:H (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    48079 1s64:J (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    48080 1s64:J (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    48081 1s64:L (2.55) BS01 ZN 2.5.1.59 GO:0003824 ... P53610 15248757
    48082 1s64:L (2.55) BS02 778 2.5.1.59 GO:0003824 ... P53610 15248757
    48083 1s66:L (1.8) BS01 HEM 3.1.4.52 N/A P76129 15005609
    48084 1s66:U (1.8) BS01 HEM 3.1.4.52 N/A P76129 15005609
    48085 1s67:L (1.5) BS01 HEM 3.1.4.52 N/A P76129 15005609
    48086 1s67:U (1.5) BS01 HEM 3.1.4.52 N/A P76129 15005609
    48087 1s68:A (1.9) BS01 AMP 6.5.1.3 GO:0003972 ... P32277 14962393
    48088 1s69:A (1.68) BS01 CYN ? GO:0005344 ... P73925 15289104
    48089 1s69:A (1.68) BS02 HEM ? GO:0005344 ... P73925 15289104
    48090 1s6a:A (1.69) BS01 AZI ? GO:0005344 ... P73925 15289104
    48091 1s6a:A (1.69) BS02 HEM ? GO:0005344 ... P73925 15289104
    48092 1s6b:A (1.6) BS01 CA 3.1.1.4 GO:0004623 ... P60043 15828003
    48093 1s6b:B (1.6) BS01 CA 3.1.1.4 GO:0004623 ... P60044 15828003
    48094 1s6b:B (1.6) BS02 CA 3.1.1.4 GO:0004623 ... P60044 15828003
    48095 1s6c:A (2.0) BS01 peptide ? GO:0005509 ... Q8R426 14980206
    48096 1s6c:A (2.0) BS02 CA ? GO:0005509 ... Q8R426 14980206
    48097 1s6c:A (2.0) BS03 CA ? GO:0005509 ... Q8R426 14980206
    48098 1s6f:A (1.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48099 1s6f:A (1.8) BS02 SBP 3.4.21.4 GO:0004252 ... P00761 15005618
    48100 1s6f:A (1.8) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48101 1s6f:A (1.8) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48102 1s6f:A (1.8) BS05 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    48103 1s6h:A (1.45) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    48104 1s6h:A (1.45) BS02 4BZ 3.4.21.4 GO:0004252 ... P00761 15005618
    48105 1s6i:A (-1.00) BS01 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    48106 1s6i:A (-1.00) BS02 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    48107 1s6i:A (-1.00) BS03 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    48108 1s6i:A (-1.00) BS04 CA 2.7.11.1 GO:0005509 ... P28583 15155727
    48109 1s6j:A (-1.00) BS01 CA 2.7.11.1 GO:0005509 ... P28583 15568805
    48110 1s6j:A (-1.00) BS02 CA 2.7.11.1 GO:0005509 ... P28583 15568805
    48111 1s6m:A (2.28) BS01 dna ? N/A Q47673 16540117
    48112 1s6p:A (2.9) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 15115397
    48113 1s6p:A (2.9) BS02 IET 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 15115397
    48114 1s6q:A (3.0) BS01 TPB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 15115397
    48115 1s6r:A (2.24) BS01 IAP 3.5.2.6 GO:0008800 ... Q93CA2 14521155
    48116 1s6u:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... Q04656 15035611
    48117 1s6v:A (1.88) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 15071191
    48118 1s6v:B (1.88) BS01 HEC ? GO:0005515 ... P00044 15071191
    48119 1s6v:C (1.88) BS01 HEC 1.11.1.5 GO:0004601 ... P00431 15071191
    48120 1s6v:D (1.88) BS01 HEC ? GO:0005515 ... P00044 15071191
    48121 1s70:A (2.7) BS01 MN 3.1.3.16
    3.1.3.53    		 GO:0004721 ... P62207 15164081
    48122 1s70:A (2.7) BS02 MN 3.1.3.16
    3.1.3.53    		 GO:0004721 ... P62207 15164081
    48123 1s72:1 (2.4) BS01 rna ? GO:0003723 ... P32410 15184028
    48124 1s72:2 (2.4) BS01 rna ? GO:0003735 ... P22452 15184028
    48125 1s72:3 (2.4) BS01 rna ? GO:0000049 ... P32411 15184028
    48126 1s72:3 (2.4) BS02 MG ? GO:0000049 ... P32411 15184028
    48127 1s72:A (2.4) BS01 rna ? GO:0002181 ... P20276 15184028
    48128 1s72:A (2.4) BS02 MG ? GO:0002181 ... P20276 15184028
    48129 1s72:B (2.4) BS01 rna ? GO:0003723 ... P20279 15184028
    48130 1s72:C (2.4) BS01 rna ? GO:0003723 ... P12735 15184028
    48131 1s72:D (2.4) BS01 rna ? GO:0000049 ... P14124 15184028
    48132 1s72:D (2.4) BS02 rna ? GO:0000049 ... P14124 15184028
    48133 1s72:E (2.4) BS01 rna ? GO:0002181 ... P14135 15184028
    48134 1s72:F (2.4) BS01 rna ? GO:0001682 ... P12743 15184028
    48135 1s72:H (2.4) BS01 rna ? GO:0000027 ... P60617 15184028
    48136 1s72:I (2.4) BS01 rna ? GO:0003735 ... P14122 15184028
    48137 1s72:J (2.4) BS01 rna ? GO:0003729 ... P29198 15184028
    48138 1s72:K (2.4) BS01 rna ? GO:0003735 ... P22450 15184028
    48139 1s72:L (2.4) BS01 rna ? GO:0003735 ... P12737 15184028
    48140 1s72:M (2.4) BS01 rna ? GO:0002181 ... P60618 15184028
    48141 1s72:N (2.4) BS01 rna ? GO:0000027 ... P14123 15184028
    48142 1s72:N (2.4) BS02 rna ? GO:0000027 ... P14123 15184028
    48143 1s72:O (2.4) BS01 rna ? GO:0003723 ... P12733 15184028
    48144 1s72:P (2.4) BS01 rna ? GO:0003723 ... P14119 15184028
    48145 1s72:Q (2.4) BS01 rna ? GO:0003735 ... P12734 15184028
    48146 1s72:Q (2.4) BS02 rna ? GO:0003735 ... P12734 15184028
    48147 1s72:R (2.4) BS01 rna ? GO:0002181 ... P10970 15184028
    48148 1s72:S (2.4) BS01 rna ? GO:0000027 ... P12732 15184028
    48149 1s72:T (2.4) BS01 rna ? GO:0002181 ... P10972 15184028
    48150 1s72:T (2.4) BS02 MG ? GO:0002181 ... P10972 15184028
    48151 1s72:U (2.4) BS01 rna ? GO:0003735 ... P14116 15184028
    48152 1s72:V (2.4) BS01 rna ? GO:0003735 ... P10971 15184028
    48153 1s72:W (2.4) BS01 rna ? GO:0000463 ... P14121 15184028
    48154 1s72:W (2.4) BS02 rna ? GO:0000463 ... P14121 15184028
    48155 1s72:X (2.4) BS01 rna ? GO:0002181 ... P18138 15184028
    48156 1s72:Y (2.4) BS01 rna ? GO:0000166 ... P12736 15184028
    48157 1s72:Y (2.4) BS02 MG ? GO:0000166 ... P12736 15184028
    48158 1s72:Z (2.4) BS01 rna ? GO:0003735 ... P60619 15184028
    48159 1s73:A (1.53) BS01 FMI 1.11.1.5 GO:0004601 ... P00431 N/A
    48160 1s76:D (2.88) BS01 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    48161 1s76:D (2.88) BS02 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    48162 1s76:D (2.88) BS03 rna 2.7.7.6 GO:0000428 ... P00573 15016374
    48163 1s76:D (2.88) BS04 APC 2.7.7.6 GO:0000428 ... P00573 15016374
    48164 1s76:D (2.88) BS05 MG 2.7.7.6 GO:0000428 ... P00573 15016374
    48165 1s76:D (2.88) BS06 MG 2.7.7.6 GO:0000428 ... P00573 15016374
    48166 1s77:D (2.69) BS01 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    48167 1s77:D (2.69) BS02 dna 2.7.7.6 GO:0000428 ... P00573 15016374
    48168 1s77:D (2.69) BS03 rna 2.7.7.6 GO:0000428 ... P00573 15016374
    48169 1s77:D (2.69) BS04 MG 2.7.7.6 GO:0000428 ... P00573 15016374
    48170 1s77:D (2.69) BS05 POP 2.7.7.6 GO:0000428 ... P00573 15016374
    48171 1s7d:A (2.17) BS01 ZN ? GO:0008270 ... P76344 N/A
    48172 1s7d:A (2.17) BS02 ZN ? GO:0008270 ... P76344 N/A
    48173 1s7g:A (2.3) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48174 1s7g:A (2.3) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48175 1s7g:A (2.3) BS03 NAD 2.3.1.286 GO:0005737 ... O30124 15023335
    48176 1s7g:B (2.3) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48177 1s7g:B (2.3) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48178 1s7g:B (2.3) BS03 NAD 2.3.1.286 GO:0005737 ... O30124 15023335
    48179 1s7g:C (2.3) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48180 1s7g:C (2.3) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48181 1s7g:C (2.3) BS03 NAD 2.3.1.286 GO:0005737 ... O30124 15023335
    48182 1s7g:D (2.3) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48183 1s7g:D (2.3) BS02 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48184 1s7g:E (2.3) BS01 ZN 2.3.1.286 GO:0005737 ... O30124 15023335
    48185 1s7g:E (2.3) BS02 APR 2.3.1.286 GO:0005737 ... O30124 15023335
    48186 1s7l:A (2.3) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    48187 1s7n:A (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    48188 1s7n:B (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    48189 1s7n:C (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    48190 1s7n:D (2.1) BS01 COA 2.3.1.- GO:0005737 ... Q8ZPC0 15817456
    48191 1s7q:A (1.99) BS01 peptide ? GO:0001913 ... P01901 15100292
    48192 1s7r:A (2.95) BS01 peptide ? GO:0001913 ... P01901 15100292
    48193 1s7r:D (2.95) BS01 peptide ? GO:0001913 ... P01901 15100292
    48194 1s7s:A (1.99) BS01 peptide ? GO:0001913 ... P01901 15100292
    48195 1s7t:A (2.3) BS01 peptide ? GO:0001913 ... P01901 15100292
    48196 1s7t:D (2.3) BS01 peptide ? GO:0001913 ... P01901 15100292
    48197 1s7u:A (2.2) BS01 peptide ? GO:0001913 ... P01899 15100292
    48198 1s7u:D (2.2) BS01 peptide ? GO:0001913 ... P01899 15100292
    48199 1s7u:G (2.2) BS01 peptide ? GO:0001913 ... P01899 15100292
    48200 1s7u:J (2.2) BS01 peptide ? GO:0001913 ... P01899 15100292
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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