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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47801 1s3s:A (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    47802 1s3s:B (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    47803 1s3s:C (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    47804 1s3s:D (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    47805 1s3s:E (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    47806 1s3s:F (2.9) BS01 ADP 3.6.4.6 GO:0005524 ... Q01853 14988733
    47807 1s3t:C (2.1) BS01 BO3 3.5.1.5 GO:0005737 ... P41020 15038715
    47808 1s3u:A (2.5) BS01 TQD 1.5.1.3 GO:0000900 ... P00374 15039552
    47809 1s3v:A (1.8) BS01 TQD 1.5.1.3 GO:0000900 ... P00374 15039552
    47810 1s3w:A (1.9) BS01 NAP 1.5.1.3 GO:0000900 ... P00374 15039552
    47811 1s3w:A (1.9) BS02 TQT 1.5.1.3 GO:0000900 ... P00374 15039552
    47812 1s3x:A (1.84) BS01 PO4 ? GO:0005524 ... P0DMV8 9083109
    47813 1s3x:A (1.84) BS02 CA ? GO:0005524 ... P0DMV8 9083109
    47814 1s3x:A (1.84) BS03 ADP ? GO:0005524 ... P0DMV8 9083109
    47815 1s3y:A (2.25) BS01 NAP 1.5.1.3 GO:0004146 ... P16184 15039552
    47816 1s3y:A (2.25) BS02 TQT 1.5.1.3 GO:0004146 ... P16184 15039552 MOAD: ic50=210nM
    47817 1s3z:A (2.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47818 1s3z:A (2.0) BS02 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47819 1s3z:A (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47820 1s3z:B (2.0) BS01 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47821 1s3z:B (2.0) BS02 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47822 1s3z:B (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47823 1s40:A (-1.00) BS01 dna ? GO:0000723 ... P32797 15066429 PDBbind: Kd=0.3nM
    47824 1s46:A (2.2) BS01 BGC 2.4.1.4 GO:0005576 ... Q9ZEU2 15023061
    47825 1s49:A (3.0) BS01 GTP 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19
    GO:0003723 ... P19711 15070734
    47826 1s4b:P (2.0) BS01 ZN 3.4.24.15 GO:0000209 ... P52888 14998993
    47827 1s4c:A (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    47828 1s4c:B (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    47829 1s4c:C (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    47830 1s4c:D (2.2) BS01 CU ? GO:0005737 ... P44583 16077096
    47831 1s4d:A (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    47832 1s4d:B (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    47833 1s4d:D (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47834 1s4d:E (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47835 1s4d:F (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47836 1s4d:G (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47837 1s4d:H (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47838 1s4d:I (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47839 1s4d:J (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47840 1s4d:K (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47841 1s4d:L (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47842 1s4d:M (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    47843 1s4e:A (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47844 1s4e:A (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47845 1s4e:B (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47846 1s4e:B (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47847 1s4e:C (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47848 1s4e:C (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47849 1s4e:D (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47850 1s4e:D (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47851 1s4e:E (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47852 1s4e:E (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47853 1s4e:F (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47854 1s4e:F (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47855 1s4e:G (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47856 1s4e:G (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47857 1s4e:H (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47858 1s4e:H (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47859 1s4e:I (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47860 1s4e:I (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    47861 1s4i:A (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47862 1s4i:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47863 1s4i:B (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47864 1s4i:B (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47865 1s4i:C (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47866 1s4i:C (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47867 1s4i:D (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47868 1s4i:D (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    47869 1s4m:A (2.1) BS01 LUM 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 15468322
    47870 1s4m:B (2.1) BS01 LUM 2.7.1.26
    2.7.7.2
    GO:0003919 ... Q9WZW1 15468322
    47871 1s4o:A (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    47872 1s4o:A (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    47873 1s4o:B (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    47874 1s4o:B (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    47875 1s4p:A (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    47876 1s4p:A (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    47877 1s4p:A (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    47878 1s4p:B (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    47879 1s4p:B (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    47880 1s4p:B (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    47881 1s4v:A (2.0) BS01 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    47882 1s4v:A (2.0) BS02 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    47883 1s4v:B (2.0) BS01 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    47884 1s50:A (1.65) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=7.20, Ki=0.063uM
    47885 1s51:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    47886 1s51:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    47887 1s52:A (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    47888 1s52:B (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    47889 1s53:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    47890 1s53:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    47891 1s54:A (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    47892 1s54:B (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    47893 1s56:A (2.43) BS01 HEC ? GO:0005344 ... P9WN25 15016811
    47894 1s56:A (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    47895 1s56:A (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    47896 1s56:A (2.43) BS04 XE ? GO:0005344 ... P9WN25 15016811
    47897 1s56:B (2.43) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    47898 1s56:B (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    47899 1s56:B (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    47900 1s59:A (2.6) BS01 DGI 2.7.4.6 GO:0004550 ... O64903 15465053
    47901 1s59:C (2.6) BS01 DGT 2.7.4.6 GO:0004550 ... O64903 15465053
    47902 1s5d:D (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    47903 1s5d:E (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    47904 1s5d:F (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    47905 1s5d:G (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    47906 1s5d:H (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    47907 1s5e:D (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    47908 1s5e:J (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    47909 1s5f:D (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    47910 1s5f:E (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    47911 1s5f:F (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    47912 1s5f:G (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    47913 1s5f:H (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    47914 1s5g:A (3.1) BS01 ADP ? GO:0003774 ... P24733 15184651
    47915 1s5g:Y (3.1) BS01 MG ? GO:0005509 ... P13543 15184651
    47916 1s5g:Z (3.1) BS01 CA ? GO:0005509 ... P07291 15184651
    47917 1s5j:A (2.4) BS01 MG 2.7.7.7 GO:0000166 ... P26811 15530364
    47918 1s5k:A (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47919 1s5k:B (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    47920 1s5l:A (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    47921 1s5l:A (3.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    47922 1s5l:A (3.5) BS03 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    47923 1s5l:A (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47924 1s5l:A (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47925 1s5l:A (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47926 1s5l:A (3.5) BS07 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    47927 1s5l:A (3.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47928 1s5l:A (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47929 1s5l:A (3.5) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    47930 1s5l:A (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    47931 1s5l:B (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47932 1s5l:B (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47933 1s5l:B (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47934 1s5l:B (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47935 1s5l:B (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47936 1s5l:B (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47937 1s5l:B (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47938 1s5l:B (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47939 1s5l:B (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47940 1s5l:B (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47941 1s5l:B (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47942 1s5l:B (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47943 1s5l:B (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47944 1s5l:B (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47945 1s5l:B (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47946 1s5l:B (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47947 1s5l:C (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    47948 1s5l:C (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    47949 1s5l:C (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    47950 1s5l:C (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    47951 1s5l:C (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    47952 1s5l:C (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    47953 1s5l:C (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    47954 1s5l:C (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    47955 1s5l:C (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    47956 1s5l:C (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    47957 1s5l:C (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    47958 1s5l:C (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    47959 1s5l:C (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    47960 1s5l:C (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    47961 1s5l:D (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47962 1s5l:D (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47963 1s5l:D (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47964 1s5l:D (3.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47965 1s5l:D (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47966 1s5l:D (3.5) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47967 1s5l:D (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47968 1s5l:D (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47969 1s5l:D (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47970 1s5l:E (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    47971 1s5l:F (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    47972 1s5l:H (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    47973 1s5l:H (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    47974 1s5l:H (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    47975 1s5l:H (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    47976 1s5l:K (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    47977 1s5l:K (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    47978 1s5l:M (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    47979 1s5l:V (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    47980 1s5l:a (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    47981 1s5l:a (3.5) BS02 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    47982 1s5l:a (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47983 1s5l:a (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47984 1s5l:a (3.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    47985 1s5l:a (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47986 1s5l:a (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47987 1s5l:a (3.5) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    47988 1s5l:a (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47989 1s5l:a (3.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    47990 1s5l:a (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    47991 1s5l:b (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47992 1s5l:b (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47993 1s5l:b (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47994 1s5l:b (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47995 1s5l:b (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47996 1s5l:b (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47997 1s5l:b (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47998 1s5l:b (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    47999 1s5l:b (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    48000 1s5l:b (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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