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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    458801 9b8t:A (2.95) BS05 SF4 N/A N/A Q9Y5S4 39245668
    458802 9b8y:A (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    458803 9b8y:B (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    458804 9b8y:C (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    458805 9b8y:D (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    458806 9b8z:A (3.4) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    458807 9b90:A (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    458808 9b90:B (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    458809 9b90:C (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    458810 9b90:D (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    458811 9b91:A (3.3) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    458812 9b9n:A (2.28) BS01 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    458813 9b9n:B (2.28) BS01 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    458814 9b9o:A (2.16) BS02 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    458815 9b9o:B (2.16) BS02 A1AL2 N/A GO:0016491 ... A0A0C7AN42 39220707
    458816 9bap:A (2.88) BS01 SAH N/A GO:0003677 ... Q96W73 N/A
    458817 9baq:A (2.79) BS05 SAH N/A N/A Q96W73 N/A
    458818 9baz:A (2.76) BS01 SAH N/A N/A Q96W73 N/A
    458819 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 N/A
    458820 9bbb:A (2.5) BS02 A1APA N/A GO:0002933 ... P08684 N/A
    458821 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    458822 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    458823 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    458824 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    458825 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    458826 9bc6:A (2.5) BS01 PFL N/A N/A O60741 39085604
    458827 9bc6:B (2.5) BS01 PFL N/A N/A O60741 39085604
    458828 9bc6:C (2.5) BS01 PFL N/A N/A O60741 39085604
    458829 9bc6:D (2.5) BS01 PFL N/A N/A O60741 39085604
    458830 9bc7:A (3.3) BS01 CMP N/A N/A O60741 39085604
    458831 9bc7:B (3.3) BS01 CMP N/A N/A O60741 39085604
    458832 9bc7:C (3.3) BS01 CMP N/A N/A O60741 39085604
    458833 9bc7:D (3.3) BS01 CMP N/A N/A O60741 39085604
    458834 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    458835 9bcg:A (1.898) BS01 GLC N/A N/A P0AEX9
    Q07820    		 39102508
    458836 9bcg:A (1.898) BS02 GLC N/A N/A P0AEX9
    Q07820    		 39102508
    458837 9bcg:A (1.898) BS03 A1ALT N/A N/A P0AEX9
    Q07820    		 39102508
    458838 9bd2:C (2.24) BS01 A1AL3 N/A N/A P43357 39190582
    458839 9bdd:E (2.86) BS04 APC N/A N/A O00411 39164235
    458840 9bdj:A (4.0) BS01 HEM N/A N/A P00432 N/A
    458841 9bdj:A (4.0) BS02 NDP N/A N/A P00432 N/A
    458842 9bdj:B (4.0) BS01 HEM N/A N/A P00432 N/A
    458843 9bdj:B (4.0) BS02 NDP N/A N/A P00432 N/A
    458844 9bdj:C (4.0) BS01 HEM N/A N/A P00432 N/A
    458845 9bdj:C (4.0) BS02 NDP N/A N/A P00432 N/A
    458846 9bdj:D (4.0) BS01 HEM N/A N/A P00432 N/A
    458847 9bdj:D (4.0) BS02 NDP N/A N/A P00432 N/A
    458848 9beb:A (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458849 9beb:A (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458850 9beb:A (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458851 9beb:B (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458852 9beb:B (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458853 9beb:B (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458854 9beb:C (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458855 9beb:C (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458856 9beb:C (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458857 9beb:D (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458858 9beb:D (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458859 9beb:D (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458860 9beb:E (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458861 9beb:E (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458862 9beb:E (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458863 9beb:F (1.85) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458864 9beb:F (1.85) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458865 9beb:F (1.85) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458866 9bed:A (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    458867 9bed:A (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    458868 9bed:A (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    458869 9bed:B (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    458870 9bed:B (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    458871 9bed:B (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    458872 9bed:C (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    458873 9bed:C (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    458874 9bed:C (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    458875 9bed:D (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    458876 9bed:D (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    458877 9bed:D (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    458878 9bed:E (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    458879 9bed:E (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    458880 9bed:E (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    458881 9bed:F (2.02) BS01 MOO N/A N/A A0A0U3FVB3 N/A
    458882 9bed:F (2.02) BS02 MOO N/A N/A A0A0U3FVB3 N/A
    458883 9bed:F (2.02) BS03 MOO N/A N/A A0A0U3FVB3 N/A
    458884 9bel:A (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458885 9bel:A (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458886 9bel:B (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458887 9bel:C (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458888 9bel:D (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458889 9bel:D (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458890 9bel:E (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458891 9bel:E (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458892 9bel:F (2.68) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458893 9bel:F (2.68) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458894 9bem:A (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458895 9bem:A (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458896 9bem:B (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458897 9bem:B (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458898 9bem:B (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458899 9bem:C (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458900 9bem:C (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458901 9bem:C (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458902 9bem:D (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458903 9bem:D (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458904 9bem:E (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458905 9bem:E (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458906 9bem:E (2.26) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458907 9bem:F (2.26) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458908 9bem:F (2.26) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458909 9beo:A (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458910 9beo:A (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458911 9beo:A (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458912 9beo:B (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458913 9beo:B (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458914 9beo:B (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458915 9beo:C (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458916 9beo:C (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458917 9beo:C (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458918 9beo:D (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458919 9beo:D (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458920 9beo:D (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458921 9beo:E (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458922 9beo:E (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458923 9beo:E (1.78) BS03 WO4 N/A N/A A0A0U3FVB3 N/A
    458924 9beo:F (1.78) BS01 WO4 N/A N/A A0A0U3FVB3 N/A
    458925 9beo:F (1.78) BS02 WO4 N/A N/A A0A0U3FVB3 N/A
    458926 9ber:H (4.1) BS01 BMA N/A N/A N/A 39028623
    458927 9bew:K (3.3) BS01 MAN N/A N/A N/A 39028623
    458928 9bew:K (3.3) BS02 MAN N/A N/A N/A 39028623
    458929 9bew:L (3.3) BS01 MAN N/A N/A N/A 39028623
    458930 9bew:R (3.3) BS01 MAN N/A N/A N/A 39028623
    458931 9bez:A (1.9) BS01 A1ANT N/A N/A Q9UKV8 38923271
    458932 9bez:B (1.9) BS01 A1ANT N/A N/A Q9UKV8 38923271
    458933 9bez:C (1.9) BS01 A1ANT N/A N/A Q9UKV8 38923271
    458934 9bf0:A (1.78) BS01 UTP N/A N/A Q9UKV8 38923271
    458935 9bf0:B (1.78) BS01 UTP N/A N/A Q9UKV8 38923271
    458936 9bf0:C (1.78) BS01 UTP N/A N/A Q9UKV8 38923271
    458937 9bf2:A (1.59) BS01 U N/A N/A Q9UKV8 38923271
    458938 9bf2:B (1.59) BS01 U N/A N/A Q9UKV8 38923271
    458939 9bf2:C (1.59) BS01 U N/A N/A Q9UKV8 38923271
    458940 9bfb:A (1.92) BS01 A1AN9 N/A N/A P15056 39077892
    458941 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    458942 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    458943 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    458944 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    458945 9bfy:A (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    458946 9bfy:A (1.26) BS02 A1AOL 3.6.5.2 N/A P01116 N/A
    458947 9bfy:B (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    458948 9bfy:B (1.26) BS03 A1AOL 3.6.5.2 N/A P01116 N/A
    458949 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    458950 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    458951 9bg1:A (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    458952 9bg1:A (1.51) BS03 A1AOH 3.6.5.2 N/A P01116 N/A
    458953 9bg1:B (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    458954 9bg1:B (1.51) BS03 A1AOH 3.6.5.2 N/A P01116 N/A
    458955 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    458956 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    458957 9bge:D (4.2) BS01 MAN N/A N/A N/A 39240111
    458958 9bge:F (4.2) BS01 MAN N/A N/A N/A 39240111
    458959 9bge:H (4.2) BS01 MAN N/A N/A N/A 39240111
    458960 9bgr:A (1.05) BS01 A1APE N/A N/A N/A N/A
    458961 9bgr:A (1.05) BS02 A1APE N/A N/A N/A N/A
    458962 9bgr:B (1.05) BS01 A1APE N/A N/A N/A N/A
    458963 9bgr:B (1.05) BS02 A1APE N/A N/A N/A N/A
    458964 9bhr:A (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    458965 9bhr:B (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    458966 9bhs:A (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    458967 9bhs:B (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    458968 9bht:A (3.26) BS01 GDP N/A N/A N/A 38960133
    458969 9bht:A (3.26) BS02 GTP N/A N/A N/A 38960133
    458970 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    458971 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    458972 9bht:C (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    458973 9bht:C (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    458974 9bht:D (3.26) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    458975 9bht:D (3.26) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    458976 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    458977 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    458978 9bht:F (3.26) BS01 GDP N/A N/A N/A 38960133
    458979 9bhw:A (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    458980 9bhw:A (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    458981 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    458982 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    458983 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    458984 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    458985 9bhw:D (2.72) BS01 GDP N/A GO:0000775 ... H2Y169 38960133
    458986 9bhw:D (2.72) BS02 GDP N/A GO:0000775 ... H2Y169 38960133
    458987 9bib:A (3.81) BS01 GLY N/A N/A P35439 N/A
    458988 9bib:B (3.81) BS01 GLU N/A N/A G3V746 N/A
    458989 9bib:C (3.81) BS01 GLY N/A N/A P35439 N/A
    458990 9bib:D (3.81) BS01 GLU N/A N/A G3V746 N/A
    458991 9bir:A (3.1) BS01 A1APP N/A GO:0005886 ... Q63424 N/A
    458992 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 N/A
    458993 9bit:A (3.1) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    458994 9biu:A (2.9) BS01 CXN N/A GO:0005886 ... Q63424 N/A
    458995 9bja:A (2.1) BS01 IHP N/A N/A P18177 N/A
    458996 9bja:B (2.1) BS01 IHP N/A N/A P18177 N/A
    458997 9bjk:R (3.26) BS01 A1APV N/A GO:0001965 ... P42866 38961287
    458998 9bjk:R (3.26) BS02 A1APU N/A GO:0001965 ... P42866 38961287
    458999 9bjm:A (2.07) BS01 A1APZ N/A N/A M1E1E4
    W8RJF9    		 38932487
    459000 9bju:K (2.47) BS01 TFA ? N/A Q15369 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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