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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21601 1o6y:A (2.2) BS01 ACP 2.7.11.1 GO:0004672 ... P9WI81 12551895
    21602 1o6z:A (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21603 1o6z:A (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21604 1o6z:A (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    21605 1o6z:B (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21606 1o6z:B (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21607 1o6z:B (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    21608 1o6z:C (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21609 1o6z:C (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21610 1o6z:C (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    21611 1o6z:D (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21612 1o6z:D (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    21613 1o6z:D (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    21614 1o72:A (2.41) BS01 PC ? GO:0005576 ... P07845 14604522
    21615 1o72:B (2.41) BS01 PC ? GO:0005576 ... P07845 14604522
    21616 1o75:A (1.95) BS01 PDX 3.4.-.- GO:0005886 ... P29723 12196546
    21617 1o75:B (1.95) BS01 PDX 3.4.-.- GO:0005886 ... P29723 12196546
    21618 1o76:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12464241
    21619 1o76:A (1.8) BS02 CAM 1.14.15.1 GO:0004497 ... P00183 12464241
    21620 1o76:B (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12464241
    21621 1o76:B (1.8) BS02 CYN 1.14.15.1 GO:0004497 ... P00183 12464241
    21622 1o79:A (2.8) BS01 R23 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=6.39, IC50=406nM
    21623 1o79:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 12747780
    21624 1o79:B (2.8) BS02 R23 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 12747780
    21625 1o79:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 12747780
    21626 1o79:C (2.8) BS02 R23 4.2.1.129
    5.4.99.17
    GO:0005811 ... P33247 12747780
    21627 1o7a:A (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    21628 1o7a:B (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    21629 1o7a:C (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    21630 1o7a:D (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    21631 1o7a:E (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    21632 1o7a:F (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    21633 1o7d:C (2.7) BS01 MAN 3.2.1.24 GO:0003824 ... Q29451 12634058
    21634 1o7g:A (1.7) BS01 NPY 1.14.12.12 GO:0005506 ... P0A110 12586937
    21635 1o7g:A (1.7) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    21636 1o7h:A (2.2) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    21637 1o7k:A (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    21638 1o7k:B (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    21639 1o7k:C (2.0) BS01 SO4 ? GO:0005737 ... P14598 12356722
    21640 1o7k:C (2.0) BS02 SO4 ? GO:0005737 ... P14598 12356722
    21641 1o7l:A (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    21642 1o7l:A (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    21643 1o7l:B (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    21644 1o7l:B (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    21645 1o7l:C (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    21646 1o7l:C (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    21647 1o7l:D (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    21648 1o7l:D (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    21649 1o7l:D (2.75) BS03 MOO ? GO:0000987 ... P0A9G8 12581638
    21650 1o7m:A (1.75) BS01 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    21651 1o7m:A (1.75) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    21652 1o7n:A (1.4) BS01 IND 1.14.12.12 GO:0005506 ... P0A110 12586937
    21653 1o7n:A (1.4) BS02 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    21654 1o7n:A (1.4) BS03 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    21655 1o7o:A (1.97) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 14621997
    21656 1o7o:A (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    21657 1o7o:A (1.97) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    PDBbind: -logKd/Ki=4.49, Kd=0.032mM
    21658 1o7o:B (1.97) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 14621997
    21659 1o7o:B (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    21660 1o7o:B (1.97) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    21661 1o7p:A (1.95) BS01 NDH 1.14.12.12 GO:0005506 ... P0A110 12586937
    21662 1o7p:A (1.95) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    21663 1o7q:A (1.3) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    21664 1o7q:A (1.3) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    21665 1o7q:A (1.3) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    21666 1o7q:B (1.3) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    21667 1o7q:B (1.3) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    21668 1o7q:B (1.3) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    21669 1o7s:A (1.75) BS01 CYS ? N/A Q9Y286 12438315
    21670 1o7t:A (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    21671 1o7t:B (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    21672 1o7t:C (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    21673 1o7t:D (1.65) BS01 HF3 ? GO:0006826 ... Q50964 12598891
    21674 1o7t:E (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    21675 1o7t:F (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    21676 1o7t:G (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    21677 1o7t:H (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    21678 1o7t:I (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    21679 1o7w:A (1.9) BS01 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    21680 1o86:A (2.0) BS01 GLY 3.4.15.1 GO:0006508 ... P12821 12540854
    21681 1o86:A (2.0) BS03 LPR 3.4.15.1 GO:0006508 ... P12821 12540854 PDBbind: -logKd/Ki=9.57, Ki=0.27nM
    BindingDB: IC50=1.2nM
    21682 1o87:A (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    21683 1o87:B (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    21684 1o8a:A (2.0) BS02 NXA 3.4.15.1 GO:0006508 ... P12821 12540854
    21685 1o8b:A (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    21686 1o8b:B (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    21687 1o8c:A (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    21688 1o8c:B (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    21689 1o8c:C (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    21690 1o8c:D (2.6) BS01 NDP 1.3.1.84 GO:0005737 ... P26646 15388933
    21691 1o8s:A (1.15) BS01 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    21692 1o8s:A (1.15) BS02 BGC 3.2.1.8 GO:0030246 ... Q8GJ44 12634060
    21693 1o8v:A (1.6) BS01 PLM ? GO:0005504 ... Q02970 12818189
    21694 1o90:A (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21695 1o90:A (3.1) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21696 1o90:B (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21697 1o91:C (1.9) BS01 CPS ? N/A Q00780 12782141
    21698 1o92:A (3.19) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21699 1o92:A (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21700 1o92:A (3.19) BS05 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    21701 1o92:B (3.19) BS01 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    21702 1o92:B (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21703 1o93:A (3.49) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21704 1o93:A (3.49) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    21705 1o93:B (3.49) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    21706 1o93:B (3.49) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21707 1o94:A (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    21708 1o94:A (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    21709 1o94:A (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    21710 1o94:B (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    21711 1o94:B (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    21712 1o94:B (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    21713 1o94:C (2.0) BS01 AMP ? GO:0000166 ... P53570 12567183
    21714 1o94:E (2.0) BS01 AMP ? GO:0000166 ... P53570 12567183
    21715 1o95:A (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    21716 1o95:A (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    21717 1o95:A (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    21718 1o95:B (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    21719 1o95:B (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    21720 1o95:B (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    21721 1o95:C (3.7) BS01 AMP ? GO:0000166 ... P53570 12567183
    21722 1o95:E (3.7) BS01 AMP ? GO:0000166 ... P53570 12567183
    21723 1o96:A (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    21724 1o96:A (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    21725 1o96:B (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    21726 1o96:C (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    21727 1o96:C (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    21728 1o96:D (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    21729 1o96:E (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    21730 1o96:E (3.1) BS02 FAD ? GO:0000166 ... P53570 12567183
    21731 1o96:F (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    21732 1o96:Q (3.1) BS01 AMP ? GO:0000166 ... P53570 12567183
    21733 1o96:Z (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    21734 1o97:C (1.6) BS01 AMP ? GO:0000166 ... P53570 12567183
    21735 1o97:C (1.6) BS02 FAD ? GO:0000166 ... P53570 12567183
    21736 1o97:D (1.6) BS01 FAD ? GO:0009055 ... P53571 12567183
    21737 1o98:A (1.4) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    21738 1o99:A (2.65) BS02 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    21739 1o9b:A (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    21740 1o9b:B (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    21741 1o9e:A (2.6) BS01 FSC ? GO:0005737 ... P93343 12606564 PDBbind: -logKd/Ki=4.18, Kd=66uM
    21742 1o9f:A (2.7) BS02 FSC ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    21743 1o9i:A (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    21744 1o9i:B (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    21745 1o9i:C (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    21746 1o9i:D (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    21747 1o9i:E (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    21748 1o9i:F (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    21749 1o9j:A (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    21750 1o9j:B (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    21751 1o9j:C (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    21752 1o9j:D (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    21753 1o9l:A (2.4) BS01 EMT 2.8.3.5 GO:0005739 ... Q29551 N/A
    21754 1o9o:A (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    21755 1o9o:B (2.3) BS01 MLM ? GO:0003824 ... Q9ZIV5 12711609
    21756 1o9s:A (1.75) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    21757 1o9s:B (1.75) BS03 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    21758 1o9t:A (2.9) BS01 MET 2.5.1.6 GO:0000287 ... P13444 12888348
    21759 1o9t:A (2.9) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    21760 1o9t:B (2.9) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    21761 1o9t:B (2.9) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    21762 1o9u:A (2.4) BS02 ADZ 2.7.11.1
    2.7.11.26
    GO:0004672 ... P49841 12554650
    21763 1o9v:A (1.75) BS01 SNG ? GO:0009289 ... Q99003 12864853
    21764 1o9w:A (1.65) BS01 NAG ? GO:0009289 ... Q99003 12864853 MOAD: Kd=1.18mM
    21765 1o9x:A (3.2) BS01 HEM ? GO:0003677 ... P02768 12846933
    21766 1oa0:A (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 12764602
    21767 1oa0:A (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    21768 1oa0:B (1.25) BS01 SF4 1.7.99.1 GO:0003824 ... Q01770 12764602
    21769 1oa0:B (1.25) BS02 SF3 1.7.99.1 GO:0003824 ... Q01770 12764602
    21770 1oa1:A (1.55) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 12764602
    21771 1oa1:A (1.55) BS02 SF3 1.7.99.1 GO:0003824 ... P31101 12764602
    21772 1oa7:A (2.0) BS01 BGC 3.2.1.4 GO:0005975 ... Q8J0K8 12767825
    21773 1oa7:A (2.0) BS02 BGC 3.2.1.4 GO:0005975 ... Q8J0K8 12767825
    21774 1oaa:A (1.25) BS01 OAA 1.1.1.153 GO:0004757 ... Q64105 9405351
    21775 1oaa:A (1.25) BS02 NAP 1.1.1.153 GO:0004757 ... Q64105 9405351
    21776 1oab:A (1.9) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    21777 1oab:B (1.9) BS02 PEP 2.5.1.54 GO:0003849 ... P32449 15019786
    21778 1oad:A (1.5) BS03 MQD 5.3.1.5 GO:0000287 ... P24300 12777803
    21779 1oad:B (1.5) BS03 MQD 5.3.1.5 GO:0000287 ... P24300 12777803
    21780 1oae:A (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    21781 1oae:B (1.95) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    21782 1oaf:A (1.4) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    21783 1oaf:A (1.4) BS02 ASC 1.11.1.11 GO:0004601 ... Q43758 12640445
    21784 1oag:A (1.75) BS01 HEM 1.11.1.11 GO:0004601 ... Q43758 12640445
    21785 1oah:A (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21786 1oah:A (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21787 1oah:A (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21788 1oah:A (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21789 1oah:A (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21790 1oah:A (2.3) BS09 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21791 1oah:B (2.3) BS01 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21792 1oah:B (2.3) BS02 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21793 1oah:B (2.3) BS03 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21794 1oah:B (2.3) BS04 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21795 1oah:B (2.3) BS05 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21796 1oah:B (2.3) BS06 HEC 1.7.2.2 GO:0042279 ... Q8VNU2 12618432
    21797 1oan:A (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    21798 1oan:B (2.75) BS01 FUC 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0046983 ... P12823 12759475
    21799 1oao:A (1.9) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12627225
    21800 1oao:A (1.9) BS02 XCC 1.2.7.4 GO:0003824 ... P27989 12627225

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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