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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    39401 1s2y:A (2.12) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868
    39402 1s2y:A (2.12) BS02 RSA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=127000nM
    39403 1s2y:B (2.12) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868
    39404 1s2y:B (2.12) BS02 RSA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=127000nM
    39405 1s32:B (2.05) BS01 dna ? GO:0000786 ... P62799 15100411
    39406 1s32:B (2.05) BS02 dna ? GO:0000786 ... P62799 15100411
    39407 1s32:F (2.05) BS01 dna ? GO:0000786 ... P62799 15100411
    39408 1s32:F (2.05) BS02 dna ? GO:0000786 ... P62799 15100411
    39409 1s36:A (1.96) BS01 CEI ? GO:0005509 ... Q27709 15155735
    39410 1s38:A (1.81) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    39411 1s38:A (1.81) BS02 MAQ 2.4.2.29 GO:0002099 ... P28720 N/A MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    39412 1s39:A (1.95) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    39413 1s39:A (1.95) BS02 AQO 2.4.2.29 GO:0002099 ... P28720 N/A MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    39414 1s3b:A (1.65) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868
    39415 1s3b:A (1.65) BS02 RMA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=600nM
    39416 1s3b:B (1.65) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868
    39417 1s3b:B (1.65) BS02 RMA 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=600nM
    39418 1s3e:A (1.6) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868
    39419 1s3e:A (1.6) BS02 RHP 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=17000nM
    39420 1s3e:B (1.6) BS01 FAD 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868
    39421 1s3e:B (1.6) BS02 RHP 1.4.3.21
    1.4.3.4    		 GO:0005515 ... P27338 15027868 BindingDB: Ki=17000nM
    39422 1s3g:A (2.25) BS01 ZN 2.7.4.3 GO:0004017 ... P84139 15100224
    39423 1s3g:A (2.25) BS02 AP5 2.7.4.3 GO:0004017 ... P84139 15100224
    39424 1s3i:A (2.3) BS01 BME 1.5.1.6 GO:0003824 ... P28037 14729668
    39425 1s3i:A (2.3) BS02 BME 1.5.1.6 GO:0003824 ... P28037 14729668
    39426 1s3p:A (2.0) BS01 CA ? GO:0005509 ... P02625 15287728
    39427 1s3p:A (2.0) BS02 CA ? GO:0005509 ... P02625 15287728
    39428 1s3q:A (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39429 1s3q:A (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39430 1s3q:B (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39431 1s3q:B (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39432 1s3q:C (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39433 1s3q:C (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39434 1s3q:D (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39435 1s3q:D (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39436 1s3q:E (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39437 1s3q:E (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39438 1s3q:F (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39439 1s3q:F (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39440 1s3q:G (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39441 1s3q:G (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39442 1s3q:H (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39443 1s3q:H (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39444 1s3q:I (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39445 1s3q:I (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39446 1s3q:J (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39447 1s3q:J (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39448 1s3q:K (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39449 1s3q:K (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39450 1s3q:L (2.1) BS01 ZN ? GO:0004322 ... O29424 15837202
    39451 1s3q:L (2.1) BS02 ZN ? GO:0004322 ... O29424 15837202
    39452 1s3t:C (2.1) BS01 BO3 3.5.1.5 GO:0005737 ... P41020 15038715
    39453 1s3u:A (2.5) BS01 TQD 1.5.1.3 GO:0000900 ... P00374 15039552
    39454 1s3v:A (1.8) BS01 TQD 1.5.1.3 GO:0000900 ... P00374 15039552
    39455 1s3w:A (1.9) BS01 NAP 1.5.1.3 GO:0000900 ... P00374 15039552
    39456 1s3w:A (1.9) BS02 TQT 1.5.1.3 GO:0000900 ... P00374 15039552
    39457 1s3y:A (2.25) BS01 NAP 1.5.1.3 GO:0004146 ... P16184 15039552
    39458 1s3y:A (2.25) BS02 TQT 1.5.1.3 GO:0004146 ... P16184 15039552 MOAD: ic50=210nM
    39459 1s3z:A (2.0) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39460 1s3z:A (2.0) BS02 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39461 1s3z:A (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39462 1s3z:B (2.0) BS01 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39463 1s3z:B (2.0) BS02 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39464 1s3z:B (2.0) BS03 RIO 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39465 1s40:A (-1.00) BS01 dna ? GO:0000723 ... P32797 15066429 PDBbind: Kd=0.3nM
    39466 1s46:A (2.2) BS01 BGC 2.4.1.4 GO:0005576 ... Q9ZEU2 15023061
    39467 1s49:A (3.0) BS01 GTP 2.7.7.48
    3.4.21.113
    3.4.22.-
    3.6.1.15
    3.6.4.13
    4.6.1.19    		 GO:0003723 ... P19711 15070734
    39468 1s4b:P (2.0) BS01 ZN 3.4.24.15 GO:0000209 ... P52888 14998993
    39469 1s4d:A (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    39470 1s4d:B (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295 PDBbind: -logKd/Ki=6.49, Ki=0.32uM
    39471 1s4d:D (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39472 1s4d:E (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39473 1s4d:F (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39474 1s4d:G (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39475 1s4d:H (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39476 1s4d:I (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39477 1s4d:J (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39478 1s4d:K (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39479 1s4d:L (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39480 1s4d:M (2.7) BS01 SAH 2.1.1.107 GO:0004851 ... P21631 15522295
    39481 1s4e:A (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39482 1s4e:A (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39483 1s4e:B (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39484 1s4e:B (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39485 1s4e:C (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39486 1s4e:C (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39487 1s4e:D (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39488 1s4e:D (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39489 1s4e:E (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39490 1s4e:E (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39491 1s4e:F (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39492 1s4e:F (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39493 1s4e:G (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39494 1s4e:G (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39495 1s4e:H (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39496 1s4e:H (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39497 1s4e:I (2.9) BS01 GLA 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39498 1s4e:I (2.9) BS02 ADP 2.7.1.6 GO:0000287 ... Q9HHB6 15003454
    39499 1s4i:A (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39500 1s4i:A (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39501 1s4i:B (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39502 1s4i:B (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39503 1s4i:C (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39504 1s4i:C (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39505 1s4i:D (1.8) BS01 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39506 1s4i:D (1.8) BS02 ZN 1.15.1.1 GO:0004784 ... O31851 15897454
    39507 1s4m:A (2.1) BS01 LUM 2.7.1.26
    2.7.7.2    		 GO:0003919 ... Q9WZW1 15468322
    39508 1s4m:B (2.1) BS01 LUM 2.7.1.26
    2.7.7.2    		 GO:0003919 ... Q9WZW1 15468322
    39509 1s4o:A (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    39510 1s4o:A (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    39511 1s4o:B (2.01) BS01 MN 2.4.1.- GO:0000030 ... P27809 14752117
    39512 1s4o:B (2.01) BS02 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    39513 1s4p:A (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    39514 1s4p:A (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    39515 1s4p:A (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    39516 1s4p:B (2.01) BS01 MMA 2.4.1.- GO:0000030 ... P27809 14752117
    39517 1s4p:B (2.01) BS02 MN 2.4.1.- GO:0000030 ... P27809 14752117
    39518 1s4p:B (2.01) BS03 GDP 2.4.1.- GO:0000030 ... P27809 14752117
    39519 1s4v:A (2.0) BS01 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    39520 1s4v:A (2.0) BS02 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    39521 1s4v:B (2.0) BS01 peptide 3.4.22.- GO:0006508 ... O65039 15037072
    39522 1s51:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    39523 1s51:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    39524 1s52:A (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    39525 1s52:B (2.3) BS01 RET ? GO:0005216 ... P02945 14982414
    39526 1s53:A (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    39527 1s53:B (2.0) BS01 RET ? GO:0005216 ... P02945 14982414
    39528 1s54:A (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    39529 1s54:B (2.2) BS01 RET ? GO:0005216 ... P02945 14982414
    39530 1s56:A (2.43) BS01 HEC ? GO:0005344 ... P9WN25 15016811
    39531 1s56:A (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    39532 1s56:A (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    39533 1s56:A (2.43) BS04 XE ? GO:0005344 ... P9WN25 15016811
    39534 1s56:B (2.43) BS01 HEM ? GO:0005344 ... P9WN25 15016811
    39535 1s56:B (2.43) BS02 XE ? GO:0005344 ... P9WN25 15016811
    39536 1s56:B (2.43) BS03 XE ? GO:0005344 ... P9WN25 15016811
    39537 1s59:A (2.6) BS01 DGI 2.7.4.6 GO:0004550 ... O64903 15465053
    39538 1s59:C (2.6) BS01 DGT 2.7.4.6 GO:0004550 ... O64903 15465053
    39539 1s5d:D (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    39540 1s5d:E (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    39541 1s5d:F (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    39542 1s5d:G (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    39543 1s5d:H (1.75) BS01 GAL ? GO:0005515 ... P01556 15049684
    39544 1s5e:D (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    39545 1s5e:J (1.9) BS01 GAL ? GO:0005515 ... P01556 15049684
    39546 1s5f:D (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    39547 1s5f:E (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    39548 1s5f:F (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    39549 1s5f:G (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    39550 1s5f:H (2.6) BS01 GAL ? GO:0005515 ... P01556 15049684
    39551 1s5j:A (2.4) BS01 MG 2.7.7.7 GO:0000166 ... P26811 15530364
    39552 1s5k:A (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39553 1s5k:B (2.4) BS01 COA 2.3.1.82 GO:0006084 ... Q9R381 15123251
    39554 1s5l:A (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    39555 1s5l:A (3.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    39556 1s5l:A (3.5) BS03 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    39557 1s5l:A (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    39558 1s5l:A (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    39559 1s5l:A (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    39560 1s5l:A (3.5) BS07 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    39561 1s5l:A (3.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    39562 1s5l:A (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    39563 1s5l:A (3.5) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    39564 1s5l:A (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    39565 1s5l:B (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39566 1s5l:B (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39567 1s5l:B (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39568 1s5l:B (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39569 1s5l:B (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39570 1s5l:B (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39571 1s5l:B (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39572 1s5l:B (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39573 1s5l:B (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39574 1s5l:B (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39575 1s5l:B (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39576 1s5l:B (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39577 1s5l:B (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39578 1s5l:B (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39579 1s5l:B (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39580 1s5l:B (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    39581 1s5l:C (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    39582 1s5l:C (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    39583 1s5l:C (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    39584 1s5l:C (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    39585 1s5l:C (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    39586 1s5l:C (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    39587 1s5l:C (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    39588 1s5l:C (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    39589 1s5l:C (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    39590 1s5l:C (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    39591 1s5l:C (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    39592 1s5l:C (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    39593 1s5l:C (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    39594 1s5l:C (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    39595 1s5l:D (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    39596 1s5l:D (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    39597 1s5l:D (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    39598 1s5l:D (3.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    39599 1s5l:D (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    39600 1s5l:D (3.5) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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