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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30601 1o6z:B (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    30602 1o6z:B (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    30603 1o6z:C (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    30604 1o6z:C (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    30605 1o6z:C (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    30606 1o6z:D (1.95) BS01 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    30607 1o6z:D (1.95) BS02 CL 1.1.1.37 GO:0003824 ... Q07841 12581646
    30608 1o6z:D (1.95) BS03 NAD 1.1.1.37 GO:0003824 ... Q07841 12581646
    30609 1o72:A (2.41) BS01 PC ? GO:0005576 ... P07845 14604522
    30610 1o72:B (2.41) BS01 PC ? GO:0005576 ... P07845 14604522
    30611 1o75:A (1.95) BS01 PDX 3.4.-.- GO:0005886 ... P29723 12196546
    30612 1o75:B (1.95) BS01 PDX 3.4.-.- GO:0005886 ... P29723 12196546
    30613 1o76:A (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12464241
    30614 1o76:A (1.8) BS02 CAM 1.14.15.1 GO:0004497 ... P00183 12464241
    30615 1o76:B (1.8) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 12464241
    30616 1o76:B (1.8) BS02 CYN 1.14.15.1 GO:0004497 ... P00183 12464241
    30617 1o79:A (2.8) BS01 R23 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780 PDBbind: -logKd/Ki=6.39, IC50=406nM
    30618 1o79:B (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    30619 1o79:B (2.8) BS02 R23 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    30620 1o79:C (2.8) BS01 C8E 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    30621 1o79:C (2.8) BS02 R23 4.2.1.129
    5.4.99.17    		 GO:0005811 ... P33247 12747780
    30622 1o7a:A (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    30623 1o7a:B (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    30624 1o7a:C (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    30625 1o7a:D (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    30626 1o7a:E (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    30627 1o7a:F (2.25) BS01 GDL 3.2.1.52 GO:0004553 ... P07686 12706724
    30628 1o7d:A (2.7) BS01 ZN 3.2.1.24 GO:0004559 ... Q29451 12634058
    30629 1o7d:C (2.7) BS01 MAN 3.2.1.24 GO:0003824 ... Q29451 12634058
    30630 1o7g:A (1.7) BS01 NPY 1.14.12.12 GO:0005506 ... P0A110 12586937
    30631 1o7g:A (1.7) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    30632 1o7g:A (1.7) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    30633 1o7h:A (2.2) BS01 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    30634 1o7h:A (2.2) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    30635 1o7l:A (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    30636 1o7l:A (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    30637 1o7l:B (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    30638 1o7l:B (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    30639 1o7l:C (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    30640 1o7l:C (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    30641 1o7l:D (2.75) BS01 MOO ? GO:0000987 ... P0A9G8 12581638
    30642 1o7l:D (2.75) BS02 MOO ? GO:0000987 ... P0A9G8 12581638
    30643 1o7l:D (2.75) BS03 MOO ? GO:0000987 ... P0A9G8 12581638
    30644 1o7l:D (2.75) BS04 CA ? GO:0000987 ... P0A9G8 12581638
    30645 1o7m:A (1.75) BS01 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    30646 1o7m:A (1.75) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    30647 1o7m:A (1.75) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    30648 1o7n:A (1.4) BS01 IND 1.14.12.12 GO:0005506 ... P0A110 12586937
    30649 1o7n:A (1.4) BS02 OXY 1.14.12.12 GO:0005506 ... P0A110 12586937
    30650 1o7n:A (1.4) BS03 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    30651 1o7n:A (1.4) BS04 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    30652 1o7o:A (1.97) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 14621997
    30653 1o7o:A (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    30654 1o7o:A (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    30655 1o7o:A (1.97) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    PDBbind: -logKd/Ki=4.49, Kd=0.032mM
    30656 1o7o:B (1.97) BS01 BGC 2.4.1.87 GO:0005975 ... P14769 14621997
    30657 1o7o:B (1.97) BS02 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    30658 1o7o:B (1.97) BS03 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    30659 1o7o:B (1.97) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    30660 1o7p:A (1.95) BS01 NDH 1.14.12.12 GO:0005506 ... P0A110 12586937
    30661 1o7p:A (1.95) BS02 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    30662 1o7p:A (1.95) BS03 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    30663 1o7q:A (1.3) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    30664 1o7q:A (1.3) BS02 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    30665 1o7q:A (1.3) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    30666 1o7q:A (1.3) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    30667 1o7q:B (1.3) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 14621997
    30668 1o7q:B (1.3) BS02 MN 2.4.1.87 GO:0005975 ... P14769 14621997
    30669 1o7q:B (1.3) BS03 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    30670 1o7q:B (1.3) BS04 UDP 2.4.1.87 GO:0005975 ... P14769 14621997 MOAD: Kd=0.032mM
    30671 1o7t:A (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    30672 1o7t:B (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    30673 1o7t:C (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    30674 1o7t:D (1.65) BS01 HF3 ? GO:0006826 ... Q50964 12598891
    30675 1o7t:E (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    30676 1o7t:F (1.65) BS01 HF5 ? GO:0006826 ... Q50964 12598891
    30677 1o7t:G (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    30678 1o7t:H (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    30679 1o7t:I (1.65) BS01 PHF ? GO:0006826 ... Q50964 12598891
    30680 1o7w:A (1.9) BS01 FES 1.14.12.12 GO:0005506 ... P0A110 12586937
    30681 1o7w:A (1.9) BS02 FE 1.14.12.12 GO:0005506 ... P0A110 12586937
    30682 1o86:A (2.0) BS01 GLY 3.4.15.1 GO:0006508 ... P12821 12540854
    30683 1o86:A (2.0) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 12540854
    30684 1o86:A (2.0) BS03 LPR 3.4.15.1 GO:0006508 ... P12821 12540854 PDBbind: -logKd/Ki=9.57, Ki=0.27nM
    BindingDB: IC50=1.2nM
    30685 1o87:A (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    30686 1o87:B (2.1) BS01 GDP 3.6.5.4 GO:0003924 ... O07347 14696184
    30687 1o88:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30688 1o8a:A (2.0) BS01 ZN 3.4.15.1 GO:0006508 ... P12821 12540854
    30689 1o8a:A (2.0) BS02 NXA 3.4.15.1 GO:0006508 ... P12821 12540854
    30690 1o8b:A (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    30691 1o8b:B (1.25) BS01 ABF 5.3.1.6 GO:0004751 ... P0A7Z0 12517338 MOAD: Ki=2.1mM
    30692 1o8d:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30693 1o8e:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30694 1o8f:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30695 1o8g:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30696 1o8h:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30697 1o8j:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30698 1o8k:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30699 1o8l:A (2.2) BS01 CA 4.2.2.2 GO:0005576 ... P11073 12540845
    30700 1o8v:A (1.6) BS01 PLM ? GO:0005504 ... Q02970 12818189
    30701 1o90:A (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30702 1o90:A (3.1) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30703 1o90:A (3.1) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    30704 1o90:B (3.1) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30705 1o92:A (3.19) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30706 1o92:A (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30707 1o92:A (3.19) BS03 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    30708 1o92:A (3.19) BS04 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    30709 1o92:A (3.19) BS05 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    30710 1o92:B (3.19) BS01 ADP 2.5.1.6 GO:0000287 ... P13444 12888348
    30711 1o92:B (3.19) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30712 1o93:A (3.49) BS01 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30713 1o93:A (3.49) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    30714 1o93:A (3.49) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    30715 1o93:B (3.49) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    30716 1o93:B (3.49) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30717 1o94:A (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    30718 1o94:A (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    30719 1o94:A (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    30720 1o94:B (2.0) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    30721 1o94:B (2.0) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    30722 1o94:B (2.0) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    30723 1o95:A (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    30724 1o95:A (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    30725 1o95:A (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    30726 1o95:B (3.7) BS01 FMN 1.5.8.2 GO:0009056 ... P16099 12567183
    30727 1o95:B (3.7) BS02 ADP 1.5.8.2 GO:0009056 ... P16099 12567183
    30728 1o95:B (3.7) BS03 SF4 1.5.8.2 GO:0009056 ... P16099 12567183
    30729 1o96:B (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    30730 1o96:D (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    30731 1o96:F (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    30732 1o96:Z (3.1) BS01 FAD ? GO:0009055 ... P53571 12567183
    30733 1o97:D (1.6) BS01 FAD ? GO:0009055 ... P53571 12567183
    30734 1o98:A (1.4) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    30735 1o98:A (1.4) BS02 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    30736 1o98:A (1.4) BS03 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    30737 1o99:A (2.65) BS01 MN 5.4.2.12 GO:0003824 ... Q9X519 12729763
    30738 1o99:A (2.65) BS02 2PG 5.4.2.12 GO:0003824 ... Q9X519 12729763
    30739 1o9b:A (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    30740 1o9b:B (2.5) BS01 NAI 1.1.1.282 GO:0004764 ... P0A6D5 12637497
    30741 1o9d:A (2.3) BS01 peptide ? GO:0005737 ... P93343 12606564
    30742 1o9e:A (2.6) BS01 FSC ? GO:0005737 ... P93343 12606564 PDBbind: -logKd/Ki=4.18, Kd=66uM
    30743 1o9f:A (2.7) BS01 peptide ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    30744 1o9f:A (2.7) BS02 FSC ? GO:0005737 ... P93343 12606564 Manual survey: Kd=0.7uM (12606564)
    30745 1o9i:A (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30746 1o9i:A (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30747 1o9i:A (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30748 1o9i:A (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    30749 1o9i:A (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30750 1o9i:B (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30751 1o9i:B (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30752 1o9i:B (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30753 1o9i:B (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    30754 1o9i:B (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30755 1o9i:C (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30756 1o9i:C (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30757 1o9i:C (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30758 1o9i:C (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30759 1o9i:C (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    30760 1o9i:D (1.33) BS01 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30761 1o9i:D (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30762 1o9i:D (1.33) BS03 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30763 1o9i:D (1.33) BS04 O 1.11.1.6 GO:0004096 ... P60355 12631270
    30764 1o9i:D (1.33) BS05 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30765 1o9i:E (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30766 1o9i:E (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30767 1o9i:E (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30768 1o9i:E (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30769 1o9i:E (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    30770 1o9i:F (1.33) BS01 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30771 1o9i:F (1.33) BS02 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30772 1o9i:F (1.33) BS03 MN3 1.11.1.6 GO:0004096 ... P60355 12631270
    30773 1o9i:F (1.33) BS04 CA 1.11.1.6 GO:0004096 ... P60355 12631270
    30774 1o9i:F (1.33) BS05 O 1.11.1.6 GO:0004096 ... P60355 12631270
    30775 1o9j:A (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    30776 1o9j:B (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    30777 1o9j:C (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    30778 1o9j:D (2.4) BS01 NAD 1.2.1.3 GO:0001758 ... Q28399 12693930
    30779 1o9k:A (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30780 1o9k:B (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30781 1o9k:C (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30782 1o9k:D (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30783 1o9k:E (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30784 1o9k:F (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30785 1o9k:G (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30786 1o9k:H (2.6) BS01 peptide ? GO:0005634 ... P06400 12598654
    30787 1o9l:A (2.4) BS01 EMT 2.8.3.5 GO:0005739 ... Q29551 N/A
    30788 1o9s:A (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    30789 1o9s:A (1.75) BS02 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    30790 1o9s:B (1.75) BS01 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    30791 1o9s:B (1.75) BS02 peptide 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    30792 1o9s:B (1.75) BS03 SAH 2.1.1.364 GO:0005694 ... Q8WTS6 12540855
    30793 1o9t:A (2.9) BS01 MET 2.5.1.6 GO:0000287 ... P13444 12888348
    30794 1o9t:A (2.9) BS02 MG 2.5.1.6 GO:0000287 ... P13444 12888348
    30795 1o9t:A (2.9) BS03 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    30796 1o9t:B (2.9) BS01 ATP 2.5.1.6 GO:0000287 ... P13444 12888348
    30797 1o9t:B (2.9) BS02 PO4 2.5.1.6 GO:0000287 ... P13444 12888348
    30798 1o9u:A (2.4) BS01 peptide 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 12554650
    30799 1o9u:A (2.4) BS02 ADZ 2.7.11.1
    2.7.11.26    		 GO:0004672 ... P49841 12554650
    30800 1o9v:A (1.75) BS01 SNG ? GO:0009289 ... Q99003 12864853
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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