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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11401 1ha3:A (2.0) BS02 MAU 3.1.5.1 GO:0003723 ... Q5SHN6 11278992
    11402 1ha3:A (2.0) BS03 MAU 3.1.5.1 GO:0003723 ... Q5SHN6 11278992
    11403 1ha3:B (2.0) BS01 GDP 3.1.5.1 GO:0003723 ... Q5SHN6 11278992
    11404 1ha3:B (2.0) BS02 MAU 3.1.5.1 GO:0003723 ... Q5SHN6 11278992
    11405 1ha5:A (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    11406 1ha5:B (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    11407 1ha5:C (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    11408 1ha5:D (2.82) BS01 ZN ? GO:0005576 ... P0DJY7 11369867
    11409 1haa:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11381118
    11410 1hab:A (2.3) BS01 HEM ? GO:0004601 ... P69905 9223274
    11411 1hab:B (2.3) BS01 HEM ? GO:0004601 ... P68871 9223274
    11412 1hab:C (2.3) BS01 HEM ? GO:0004601 ... P69905 9223274
    11413 1hab:D (2.3) BS01 HEM ? GO:0004601 ... P68871 9223274
    11414 1hac:A (2.6) BS01 HEM ? GO:0004601 ... P69905 9223274
    11415 1hac:B (2.6) BS01 HEM ? GO:0004601 ... P68871 9223274
    11416 1hac:C (2.6) BS01 HEM ? GO:0004601 ... P69905 9223274
    11417 1hac:D (2.6) BS01 HEM ? GO:0004601 ... P68871 9223274
    11418 1hag:E (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 7756983
    11419 1haj:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11381118
    11420 1hak:A (3.0) BS01 K21 ? GO:0001786 ... P08758 9398511
    11421 1hak:B (3.0) BS01 K21 ? GO:0001786 ... P08758 9398511
    11422 1hau:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... O68601 11468394
    11423 1hau:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... O68601 11468394
    11424 1haw:A (1.9) BS01 CU1 1.7.2.1 GO:0005507 ... O68601 11468394
    11425 1hax:B (1.6) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 11473259
    11426 1hax:B (1.6) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    11427 1hay:B (1.7) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    11428 1haz:B (1.4) BS01 peptide 3.4.21.36 GO:0004252 ... P00772 11473259
    11429 1haz:B (1.4) BS02 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    11430 1hb0:B (2.05) BS01 CA 3.4.21.36 GO:0004252 ... P00772 11473259
    11431 1hb1:A (1.55) BS01 OCV 1.21.3.1 GO:0005506 ... P05326 11755401
    11432 1hb1:A (1.55) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    11433 1hb2:A (1.3) BS01 SCV 1.21.3.1 GO:0005506 ... P05326 11755401
    11434 1hb2:A (1.3) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    11435 1hb3:A (1.4) BS01 SCV 1.21.3.1 GO:0005506 ... P05326 11755401
    11436 1hb3:A (1.4) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    11437 1hb4:A (1.5) BS01 SCV 1.21.3.1 GO:0005506 ... P05326 11755401
    11438 1hb4:A (1.5) BS02 FE2 1.21.3.1 GO:0005506 ... P05326 11755401
    11439 1hba:A (2.1) BS01 HEM ? GO:0004601 ... P69905 1567857
    11440 1hba:B (2.1) BS01 HEM ? GO:0004601 ... P68871 1567857
    11441 1hba:C (2.1) BS01 HEM ? GO:0004601 ... P69905 1567857
    11442 1hba:D (2.1) BS01 HEM ? GO:0004601 ... P68871 1567857
    11443 1hbb:A (1.9) BS01 HEM ? GO:0004601 ... P69905 1567857
    11444 1hbb:B (1.9) BS01 HEM ? GO:0004601 ... P68871 1567857
    11445 1hbb:C (1.9) BS01 HEM ? GO:0004601 ... P69905 1567857
    11446 1hbb:D (1.9) BS01 HEM ? GO:0004601 ... P68871 1567857
    11447 1hbh:A (2.2) BS01 HEM ? GO:0004601 ... P80043 7623382
    11448 1hbh:B (2.2) BS01 HEM ? GO:0004601 ... P80044 7623382
    11449 1hbh:C (2.2) BS01 HEM ? GO:0004601 ... P80043 7623382
    11450 1hbh:D (2.2) BS01 HEM ? GO:0004601 ... P80044 7623382
    11451 1hbi:A (1.7) BS01 HEM ? GO:0001666 ... P02213 7929217
    11452 1hbi:A (1.7) BS02 OXY ? GO:0001666 ... P02213 7929217
    11453 1hbi:A (1.7) BS03 HEM ? GO:0001666 ... P02213 7929217
    11454 1hbi:B (1.7) BS01 HEM ? GO:0001666 ... P02213 7929217
    11455 1hbi:B (1.7) BS02 HEM ? GO:0001666 ... P02213 7929217
    11456 1hbi:B (1.7) BS03 OXY ? GO:0001666 ... P02213 7929217
    11457 1hbj:A (2.5) BS01 FBQ 3.1.1.7 GO:0001507 ... P04058 11563919 PDBbind: -logKd/Ki=8.52, IC50=3.0nM
    BindingDB: IC50=11000nM
    11458 1hbm:A (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11459 1hbm:A (1.8) BS02 SHT 2.8.4.1 GO:0005737 ... P11558 11491299
    11460 1hbm:A (1.8) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11461 1hbm:A (1.8) BS04 SHT 2.8.4.1 GO:0005737 ... P11558 11491299
    11462 1hbm:B (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11463 1hbm:B (1.8) BS02 SHT 2.8.4.1 GO:0005737 ... P11560 11491299
    11464 1hbm:C (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11465 1hbm:D (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11466 1hbm:D (1.8) BS02 SHT 2.8.4.1 GO:0005737 ... P11558 11491299
    11467 1hbm:D (1.8) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11468 1hbm:D (1.8) BS04 SHT 2.8.4.1 GO:0005737 ... P11558 11491299
    11469 1hbm:E (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11470 1hbm:E (1.8) BS02 SHT 2.8.4.1 GO:0005737 ... P11560 11491299
    11471 1hbm:F (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11472 1hbn:A (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11473 1hbn:A (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11474 1hbn:A (1.16) BS03 COM 2.8.4.1 GO:0005737 ... P11558 11491299
    11475 1hbn:A (1.16) BS04 MG 2.8.4.1 GO:0005737 ... P11558 11491299
    11476 1hbn:A (1.16) BS05 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11477 1hbn:A (1.16) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11478 1hbn:B (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11479 1hbn:B (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    11480 1hbn:B (1.16) BS03 COM 2.8.4.1 GO:0005737 ... P11560 11491299
    11481 1hbn:C (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11482 1hbn:D (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11483 1hbn:D (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11484 1hbn:D (1.16) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11485 1hbn:D (1.16) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11486 1hbn:D (1.16) BS05 COM 2.8.4.1 GO:0005737 ... P11558 11491299
    11487 1hbn:E (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11488 1hbn:E (1.16) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    11489 1hbn:E (1.16) BS03 COM 2.8.4.1 GO:0005737 ... P11560 11491299
    11490 1hbn:F (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11491 1hbn:F (1.16) BS02 MG 2.8.4.1 GO:0005737 ... P11562 11491299
    11492 1hbo:A (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11493 1hbo:A (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11494 1hbo:A (1.78) BS03 COM 2.8.4.1 GO:0005737 ... P11558 11491299
    11495 1hbo:A (1.78) BS04 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11496 1hbo:A (1.78) BS05 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11497 1hbo:B (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11498 1hbo:B (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    11499 1hbo:B (1.78) BS03 COM 2.8.4.1 GO:0005737 ... P11560 11491299
    11500 1hbo:C (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11501 1hbo:D (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11502 1hbo:D (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11503 1hbo:D (1.78) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11504 1hbo:D (1.78) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11505 1hbo:D (1.78) BS05 COM 2.8.4.1 GO:0005737 ... P11558 11491299
    11506 1hbo:E (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11507 1hbo:E (1.78) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    11508 1hbo:F (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11509 1hbp:A (1.9) BS01 RTL ? GO:0005501 ... P18902 8496140
    11510 1hbr:A (2.3) BS01 HEM ? GO:0004601 ... P02001 10037733
    11511 1hbr:B (2.3) BS01 HEM ? GO:0004601 ... P02112 10037733
    11512 1hbr:C (2.3) BS01 HEM ? GO:0004601 ... P02001 10037733
    11513 1hbr:D (2.3) BS01 HEM ? GO:0004601 ... P02112 10037733
    11514 1hbs:A (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    11515 1hbs:B (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    11516 1hbs:C (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    11517 1hbs:D (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    11518 1hbs:E (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    11519 1hbs:F (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    11520 1hbs:G (3.0) BS01 HEM ? GO:0004601 ... P69905 4008491
    11521 1hbs:H (3.0) BS01 HEM ? GO:0004601 ... P68871 4008491
    11522 1hbu:A (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11523 1hbu:A (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11524 1hbu:A (1.9) BS03 COM 2.8.4.1 GO:0005737 ... P11558 11491299
    11525 1hbu:A (1.9) BS04 MG 2.8.4.1 GO:0005737 ... P11558 11491299
    11526 1hbu:A (1.9) BS05 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11527 1hbu:A (1.9) BS06 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11528 1hbu:B (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11529 1hbu:B (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    11530 1hbu:B (1.9) BS03 COM 2.8.4.1 GO:0005737 ... P11560 11491299
    11531 1hbu:C (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11532 1hbu:D (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11533 1hbu:D (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11534 1hbu:D (1.9) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    11535 1hbu:D (1.9) BS04 TP7 2.8.4.1 GO:0005737 ... P11558 11491299
    11536 1hbu:D (1.9) BS05 COM 2.8.4.1 GO:0005737 ... P11558 11491299
    11537 1hbu:E (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    11538 1hbu:E (1.9) BS02 TP7 2.8.4.1 GO:0005737 ... P11560 11491299
    11539 1hbu:E (1.9) BS03 COM 2.8.4.1 GO:0005737 ... P11560 11491299
    11540 1hbu:F (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    11541 1hby:A (2.0) BS01 PO4 3.1.27.- GO:0001525 ... P03950 11468363
    11542 1hbz:A (1.5) BS01 HEM 1.11.1.6 GO:0004096 ... P29422 1426241
    11543 1hc1:A (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11544 1hc1:A (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11545 1hc1:B (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11546 1hc1:B (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11547 1hc1:C (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11548 1hc1:C (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11549 1hc1:D (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11550 1hc1:D (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11551 1hc1:E (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11552 1hc1:E (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11553 1hc1:F (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11554 1hc1:F (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11555 1hc7:A (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    11556 1hc7:B (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    11557 1hc7:C (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    11558 1hc7:D (2.43) BS01 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    11559 1hc8:A (2.8) BS01 rna ? GO:0003735 ... P56210 12054794
    11560 1hc8:B (2.8) BS01 rna ? GO:0003735 ... P56210 12054794
    11561 1hc9:A (1.8) BS01 peptide ? GO:0005515 ... P60616 11683996
    11562 1hc9:B (1.8) BS01 peptide ? GO:0005515 ... P60615 11683996
    11563 1hca:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    11564 1hcb:A (1.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 8057362
    11565 1hcb:A (1.6) BS02 BCT 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 8057362 BindingDB: Ki=12000000nM
    11566 1hch:A (1.57) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11567 1hch:A (1.57) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11568 1hch:A (1.57) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11569 1hch:A (1.57) BS04 O 1.11.1.7 GO:0004601 ... P00433 12024218
    11570 1hck:A (1.9) BS01 MG 2.7.11.22 GO:0000082 ... P24941 8917641
    11571 1hck:A (1.9) BS02 ATP 2.7.11.22 GO:0000082 ... P24941 8917641
    11572 1hcm:A (2.5) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11373294
    11573 1hcm:A (2.5) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11373294
    11574 1hcm:B (2.5) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11373294
    11575 1hcm:B (2.5) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P72181 11373294
    11576 1hco:A (2.7) BS01 HEM ? GO:0004601 ... P69905 7373648
    11577 1hco:B (2.7) BS01 HEM ? GO:0004601 ... P68871 7373648
    11578 1hcy:A (3.2) BS01 CU ? GO:0005344 ... P04254 2585484
    11579 1hcy:A (3.2) BS02 CU ? GO:0005344 ... P04254 2585484
    11580 1hcz:A (1.96) BS01 HEM ? GO:0005506 ... P36438 8762139
    11581 1hda:A (2.2) BS01 HEM ? GO:0004601 ... P01966 8411160
    11582 1hda:B (2.2) BS01 HEM ? GO:0004601 ... P02070 8411160
    11583 1hda:C (2.2) BS01 HEM ? GO:0004601 ... P01966 8411160
    11584 1hda:D (2.2) BS01 HEM ? GO:0004601 ... P02070 8411160
    11585 1hdb:A (2.2) BS01 HEM ? GO:0004601 ... P69905 8639677
    11586 1hdb:B (2.2) BS01 HEM ? GO:0004601 ... P68871 8639677
    11587 1hdb:C (2.2) BS01 HEM ? GO:0004601 ... P69905 8639677
    11588 1hdb:D (2.2) BS01 HEM ? GO:0004601 ... P68871 8639677
    11589 1hdf:A (2.35) BS01 CA ? GO:0005737 ... P09353 11250196
    11590 1hdf:A (2.35) BS02 CA ? GO:0005737 ... P09353 11250196
    11591 1hdf:B (2.35) BS01 CA ? GO:0005737 ... P09353 11250196
    11592 1hdf:B (2.35) BS02 CA ? GO:0005737 ... P09353 11250196
    11593 1hdg:O (2.5) BS01 NAD 1.2.1.12 GO:0000166 ... P17721 7877172
    11594 1hdg:Q (2.5) BS01 NAD 1.2.1.12 GO:0000166 ... P17721 7877172
    11595 1hdh:A (1.3) BS01 CA 3.1.6.1 GO:0004065 ... P51691 11435113
    11596 1hdh:A (1.3) BS02 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    11597 1hdh:A (1.3) BS03 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    11598 1hdh:B (1.3) BS01 CA 3.1.6.1 GO:0004065 ... P51691 11435113
    11599 1hdh:B (1.3) BS02 SO4 3.1.6.1 GO:0004065 ... P51691 11435113
    11600 1hdh:B (1.3) BS03 SO4 3.1.6.1 GO:0004065 ... P51691 11435113

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218