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BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 1b80:B (1.73) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2602 1b80:B (1.73) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2603 1b82:A (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2604 1b82:A (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2605 1b82:A (1.8) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2606 1b82:B (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2607 1b82:B (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2608 1b82:B (1.8) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2609 1b85:A (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2610 1b85:A (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2611 1b85:A (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2612 1b85:B (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2613 1b85:B (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    2614 1b85:B (1.85) BS03 HEM 1.11.1.14 GO:0000302 ... P06181 11162097
    2615 1b86:A (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    2616 1b86:B (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    2617 1b86:B (2.5) BS02 DG2 ? GO:0004601 ... P68871 8377203
    2618 1b86:C (2.5) BS01 HEM ? GO:0004601 ... P69905 8377203
    2619 1b86:D (2.5) BS01 HEM ? GO:0004601 ... P68871 8377203
    2620 1b87:A (2.7) BS01 ACO ? GO:0016747 ... Q47764 10378269
    2621 1b8a:A (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    2622 1b8a:A (1.9) BS02 ATP 6.1.1.12 GO:0000166 ... Q52428 9724658
    2623 1b8a:B (1.9) BS01 MN 6.1.1.12 GO:0000166 ... Q52428 9724658
    2624 1b8a:B (1.9) BS02 ATP 6.1.1.12 GO:0000166 ... Q52428 9724658
    2625 1b8c:A (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    2626 1b8c:B (2.0) BS01 MG ? GO:0005509 ... P02618 10545326
    2627 1b8g:A (2.37) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 10610793
    2628 1b8g:B (2.37) BS01 PLP 1.4.-.-
    4.4.1.14
    GO:0003824 ... P37821 10610793
    2629 1b8h:B (3.0) BS01 peptide ? GO:0006260 ... O80164 10535734
    2630 1b8i:A (2.4) BS01 dna ? GO:0000981 ... P83949 10067897
    2631 1b8i:A (2.4) BS02 dna ? GO:0000981 ... P83949 10067897
    2632 1b8i:B (2.4) BS01 dna ? GO:0000981 ... P40427 10067897
    2633 1b8i:B (2.4) BS02 dna ? GO:0000981 ... P40427 10067897
    2634 1b8j:A (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2635 1b8j:A (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2636 1b8j:A (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    2637 1b8j:B (1.9) BS01 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2638 1b8j:B (1.9) BS02 ZN 3.1.3.1 GO:0000287 ... P00634 10085061
    2639 1b8j:B (1.9) BS03 MG 3.1.3.1 GO:0000287 ... P00634 10085061
    2640 1b8l:A (1.7) BS01 CA ? GO:0005509 ... P02618 10545326
    2641 1b8n:A (2.0) BS01 IMG 2.4.2.1 GO:0003824 ... P55859 12463747 MOAD: Ki=30pM
    PDBbind: -logKd/Ki=10.52, Ki=30pM
    BindingDB: Ki=0.030000nM
    2642 1b8o:A (1.5) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11170405
    2643 1b8o:A (1.5) BS02 IMH 2.4.2.1 GO:0003824 ... P55859 11170405 MOAD: Ki=23pM
    PDBbind: -logKd/Ki=10.64, Ki=23pM
    2644 1b8r:A (1.9) BS01 CA ? GO:0005509 ... P02618 10545326
    2645 1b8r:A (1.9) BS02 CA ? GO:0005509 ... P02618 10545326
    2646 1b8s:A (1.65) BS01 FAD 1.1.3.6
    5.3.3.1
    GO:0004769 ... P12676 10194345
    2647 1b8t:A (-1.00) BS01 ZN ? GO:0001725 ... P67966 10231520
    2648 1b8t:A (-1.00) BS02 ZN ? GO:0001725 ... P67966 10231520
    2649 1b8t:A (-1.00) BS03 ZN ? GO:0001725 ... P67966 10231520
    2650 1b8t:A (-1.00) BS04 ZN ? GO:0001725 ... P67966 10231520
    2651 1b8u:A (2.5) BS01 OAA 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    2652 1b8u:A (2.5) BS02 NAD 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    2653 1b8v:A (2.1) BS01 NAD 1.1.1.37 GO:0003824 ... Q9ZF99 10206992
    2654 1b8y:A (2.0) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    2655 1b8y:A (2.0) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    2656 1b8y:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    2657 1b8y:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    2658 1b8y:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    2659 1b8y:A (2.0) BS06 IN7 3.4.24.17 GO:0004222 ... P08254 10422833 MOAD: Ki=14nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    2660 1b90:A (2.5) BS01 ACT 3.2.1.2 GO:0000272 ... P36924 10353816
    2661 1b90:A (2.5) BS02 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    2662 1b93:B (1.9) BS01 PO4 4.2.3.3 GO:0005737 ... P0A731 10368300
    2663 1b94:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2664 1b94:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2665 1b94:A (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    2666 1b94:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2667 1b94:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2668 1b94:B (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    2669 1b95:A (2.05) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2670 1b95:A (2.05) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2671 1b95:B (2.05) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2672 1b95:B (2.05) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2673 1b96:A (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2674 1b96:A (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2675 1b96:B (2.3) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2676 1b96:B (2.3) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2677 1b97:A (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2678 1b97:A (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2679 1b97:B (1.9) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2680 1b97:B (1.9) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10446231
    2681 1b99:A (2.7) BS01 FUP 2.7.4.6 GO:0004550 ... P22887 10353838
    2682 1b99:C (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    2683 1b99:D (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    2684 1b99:E (2.7) BS01 POP 2.7.4.6 GO:0004550 ... P22887 10353838
    2685 1b9a:A (2.0) BS01 CA ? GO:0005509 ... P02618 10545326
    2686 1b9a:A (2.0) BS02 CA ? GO:0005509 ... P02618 10545326
    2687 1b9e:B (2.5) BS01 peptide ? GO:0005179 ... P01308 10489447
    2688 1b9e:D (2.5) BS01 peptide ? GO:0005179 ... P01308 10489447
    2689 1b9h:A (2.0) BS01 PLP 2.6.1.-
    4.2.1.144
    GO:0000271 ... O52552 10433690
    2690 1b9i:A (2.0) BS01 PXG 2.6.1.-
    4.2.1.144
    GO:0000271 ... O52552 10433690
    2691 1b9j:A (1.8) BS01 peptide ? GO:0015031 ... P06202 10438628
    2692 1b9o:A (1.15) BS01 CA ? GO:0000139 ... P00709 10080897
    2693 1b9r:A (-1.00) BS01 FES ? GO:0005829 ... P33007 10220356
    2694 1b9s:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    2695 1b9s:A (2.5) BS02 FDI 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50>667uM
    PDBbind: -logKd/Ki=3.18, IC50>667uM
    BindingDB: IC50=670000nM
    2696 1b9t:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    2697 1b9t:A (2.4) BS02 RAI 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50=8uM
    PDBbind: -logKd/Ki=5.10, IC50=8uM
    BindingDB: IC50=8000nM
    2698 1b9v:A (2.35) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    2699 1b9v:A (2.35) BS02 RA2 3.2.1.18 GO:0004308 ... P03474 10547289 MOAD: ic50=224uM
    PDBbind: -logKd/Ki=3.65, IC50=224uM
    BindingDB: IC50=271000nM
    2700 1b9z:A (2.1) BS01 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2701 1b9z:A (2.1) BS02 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2702 1b9z:A (2.1) BS03 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2703 1b9z:A (2.1) BS04 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2704 1b9z:A (2.1) BS05 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2705 1b9z:A (2.1) BS06 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2706 1b9z:A (2.1) BS07 GLC 3.2.1.2 GO:0000272 ... P36924 10353816
    2707 1b9z:A (2.1) BS08 ACT 3.2.1.2 GO:0000272 ... P36924 10353816
    2708 1b9z:A (2.1) BS09 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    2709 1ba0:A (1.9) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 9585559
    2710 1ba1:A (1.7) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 9585559
    2711 1ba3:A (2.2) BS01 MBR 1.13.12.7 GO:0001676 ... P08659 9788915
    2712 1ba3:A (2.2) BS02 MBR 1.13.12.7 GO:0001676 ... P08659 9788915
    2713 1ba8:B (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    2714 1ba8:B (1.8) BS02 0IT 3.4.21.5 GO:0004252 ... P00734 9724521 PDBbind: -logKd/Ki=9.00, Ki=1.0nM
    2715 1ba9:A (-1.00) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 9718300
    2716 1ba9:A (-1.00) BS02 CU1 1.15.1.1 GO:0000302 ... P00441 9718300
    2717 1bab:A (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    2718 1bab:B (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    2719 1bab:C (1.5) BS01 HEM ? GO:0004601 ... P69905 1618774
    2720 1bab:D (1.5) BS01 HEM ? GO:0004601 ... P68871 1618774
    2721 1bag:A (2.5) BS01 BGC 3.2.1.1 GO:0003824 ... P00691 9514750
    2722 1bag:A (2.5) BS02 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2723 1bag:A (2.5) BS03 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2724 1bag:A (2.5) BS04 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2725 1bag:A (2.5) BS05 GLC 3.2.1.1 GO:0003824 ... P00691 9514750
    2726 1bag:A (2.5) BS06 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    2727 1bag:A (2.5) BS07 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    2728 1bag:A (2.5) BS08 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    2729 1bai:A (2.4) BS01 0Q4 3.4.23.- GO:0004190 ... P03322 9521772 MOAD: Ki=20nM
    PDBbind: -logKd/Ki=7.70, Ki=20nM
    2730 1bai:B (2.4) BS01 0Q4 3.4.23.- GO:0004190 ... P03322 9521772 PDBbind: -logKd/Ki=7.70, Ki=20nM
    2731 1bap:A (1.75) BS01 ARA ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    2732 1bap:A (1.75) BS02 ARB ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    2733 1bav:A (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2734 1bav:A (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2735 1bav:B (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2736 1bav:B (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2737 1bav:C (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2738 1bav:C (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2739 1bav:D (1.6) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 N/A
    2740 1bav:D (1.6) BS02 BIP 3.4.17.1 GO:0004181 ... P00730 N/A
    2741 1baw:A (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    2742 1baw:A (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    2743 1baw:B (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    2744 1baw:B (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    2745 1baw:C (2.8) BS01 CU ? GO:0005507 ... Q51883 10089349
    2746 1baw:C (2.8) BS02 ZN ? GO:0005507 ... Q51883 10089349
    2747 1bb0:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    2748 1bb0:B (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    2749 1bb0:B (2.1) BS03 0IV 3.4.21.5 GO:0004252 ... P00734 9724521 PDBbind: -logKd/Ki=8.36, Ki=4.4nM
    BindingDB: IC50=28.8nM
    2750 1bb6:A (2.0) BS01 UMG 3.2.1.17 GO:0003796 ... P11941 10089395 MOAD: Ka=500000M^-1
    2751 1bb7:A (2.0) BS01 GUM 3.2.1.17 GO:0003796 ... P11941 10089395 MOAD: Ka=15000M^-1
    2752 1bbb:A (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    2753 1bbb:B (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    2754 1bbb:C (1.7) BS01 HEM ? GO:0004601 ... P69905 1512262
    2755 1bbb:D (1.7) BS01 HEM ? GO:0004601 ... P68871 1512262
    2756 1bbh:A (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    2757 1bbh:B (1.8) BS01 HEC ? GO:0005506 ... P00154 8230224
    2758 1bbp:A (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2759 1bbp:B (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2760 1bbp:C (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2761 1bbp:D (2.0) BS01 BLV ? GO:0000302 ... P09464 3430616
    2762 1bbr:E (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2763 1bbr:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2764 1bbr:K (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2765 1bbr:N (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00735 1560020
    2766 1bbu:A (2.7) BS01 LYS 6.1.1.6 GO:0000049 ... P0A8N3 11041850
    2767 1bbx:C (-1.00) BS01 dna ? GO:0003677 ... P39476 9665172
    2768 1bbx:C (-1.00) BS02 dna ? GO:0003677 ... P39476 9665172
    2769 1bbx:D (-1.00) BS01 dna ? GO:0003677 ... P39476 9665172
    2770 1bbx:D (-1.00) BS02 dna ? GO:0003677 ... P39476 9665172
    2771 1bc0:A (2.0) BS01 CA ? GO:0001786 ... P14668 9609693
    2772 1bc0:A (2.0) BS02 CA ? GO:0001786 ... P14668 9609693
    2773 1bc0:A (2.0) BS03 CA ? GO:0001786 ... P14668 9609693
    2774 1bc0:A (2.0) BS04 CA ? GO:0001786 ... P14668 9609693
    2775 1bc0:A (2.0) BS05 CA ? GO:0001786 ... P14668 9609693
    2776 1bc1:A (2.05) BS01 CA ? GO:0001786 ... P14668 9609693
    2777 1bc1:A (2.05) BS02 CA ? GO:0001786 ... P14668 9609693
    2778 1bc1:A (2.05) BS03 CA ? GO:0001786 ... P14668 9609693
    2779 1bc1:A (2.05) BS04 CA ? GO:0001786 ... P14668 9609693
    2780 1bc1:A (2.05) BS05 CA ? GO:0001786 ... P14668 9609693
    2781 1bc2:A (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    2782 1bc2:A (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    2783 1bc2:B (1.9) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    2784 1bc2:B (1.9) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 9730812
    2785 1bc3:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693
    2786 1bc3:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    2787 1bc3:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    2788 1bc3:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    2789 1bc3:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693
    2790 1bc5:A (2.2) BS01 peptide 2.1.1.80 GO:0006935 ... P07801 9628482
    2791 1bc5:A (2.2) BS02 SAH 2.1.1.80 GO:0006935 ... P07801 9628482
    2792 1bc6:A (-1.00) BS01 F3S ? GO:0009055 ... Q45560 9657695
    2793 1bc6:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9657695
    2794 1bc7:C (2.01) BS01 dna ? GO:0003700 ... P28324 9734357
    2795 1bc7:C (2.01) BS02 dna ? GO:0003700 ... P28324 9734357
    2796 1bc8:C (1.93) BS01 dna ? GO:0003700 ... P28324 9734357
    2797 1bc8:C (1.93) BS02 dna ? GO:0003700 ... P28324 9734357
    2798 1bcc:C (3.16) BS01 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    2799 1bcc:C (3.16) BS02 HEM 1.10.2.2 GO:0005737 ... P18946 9565029
    2800 1bcc:C (3.16) BS03 U10 1.10.2.2 GO:0005737 ... P18946 9565029

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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