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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4801 1c9b:B (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    4802 1c9b:E (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4803 1c9b:E (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4804 1c9b:E (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4805 1c9b:E (2.65) BS04 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4806 1c9b:F (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    4807 1c9b:F (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    4808 1c9b:I (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4809 1c9b:I (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4810 1c9b:I (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4811 1c9b:J (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    4812 1c9b:J (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    4813 1c9b:M (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4814 1c9b:M (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4815 1c9b:M (2.65) BS03 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4816 1c9b:N (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    4817 1c9b:N (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    4818 1c9b:Q (2.65) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4819 1c9b:Q (2.65) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 10619841
    4820 1c9b:R (2.65) BS01 dna ? GO:0003677 ... P20226 10619841
    4821 1c9b:R (2.65) BS02 dna ? GO:0003677 ... P20226 10619841
    4822 1c9c:A (2.4) BS01 PP3 2.6.1.1 GO:0003824 ... P00509 10858450
    4823 1c9d:A (2.3) BS01 HF1 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=499nM
    PDBbind: -logKd/Ki=6.30, IC50=499nM
    4824 1c9d:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    4825 1c9e:A (2.3) BS01 MP1 4.99.1.9 GO:0004325 ... P32396 10704318
    4826 1c9h:A (2.0) BS01 RAP 5.2.1.8 GO:0002027 ... P68106 10713512 BindingDB: Kd=0.200000nM
    4827 1c9i:A (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    4828 1c9i:B (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    4829 1c9j:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    4830 1c9j:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    4831 1c9k:A (2.2) BS01 5GP 2.7.1.156
    2.7.7.62    		 GO:0000166 ... Q05599 10529169
    4832 1c9k:B (2.2) BS01 5GP 2.7.1.156
    2.7.7.62    		 GO:0000166 ... Q05599 10529169
    4833 1c9k:C (2.2) BS01 MG 2.7.1.156
    2.7.7.62    		 GO:0000166 ... Q05599 10529169
    4834 1c9k:C (2.2) BS02 POP 2.7.1.156
    2.7.7.62    		 GO:0000166 ... Q05599 10529169
    4835 1c9k:C (2.2) BS03 5GP 2.7.1.156
    2.7.7.62    		 GO:0000166 ... Q05599 10529169
    4836 1c9l:A (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    4837 1c9l:B (2.9) BS01 peptide ? GO:0005198 ... P11442 10655490
    4838 1c9m:A (1.67) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    4839 1c9m:A (1.67) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    4840 1c9n:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    4841 1c9n:A (1.5) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    4842 1c9o:A (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    4843 1c9o:B (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    4844 1c9p:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10512718
    4845 1c9s:A (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4846 1c9s:A (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4847 1c9s:A (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4848 1c9s:B (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4849 1c9s:B (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4850 1c9s:C (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4851 1c9s:C (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4852 1c9s:D (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4853 1c9s:D (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4854 1c9s:E (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4855 1c9s:E (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4856 1c9s:F (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4857 1c9s:F (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4858 1c9s:G (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4859 1c9s:G (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4860 1c9s:H (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4861 1c9s:H (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4862 1c9s:I (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4863 1c9s:I (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4864 1c9s:J (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4865 1c9s:J (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4866 1c9s:K (1.9) BS01 TRP ? GO:0003723 ... Q9X6J6 10499579
    4867 1c9s:K (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4868 1c9s:L (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4869 1c9s:L (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4870 1c9s:L (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4871 1c9s:M (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4872 1c9s:M (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4873 1c9s:M (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4874 1c9s:N (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4875 1c9s:N (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4876 1c9s:N (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4877 1c9s:O (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4878 1c9s:O (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4879 1c9s:O (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4880 1c9s:P (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4881 1c9s:P (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4882 1c9s:P (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4883 1c9s:Q (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4884 1c9s:Q (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4885 1c9s:Q (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4886 1c9s:R (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4887 1c9s:R (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4888 1c9s:R (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4889 1c9s:S (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4890 1c9s:S (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4891 1c9s:S (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4892 1c9s:T (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4893 1c9s:T (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4894 1c9s:T (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4895 1c9s:U (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4896 1c9s:U (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4897 1c9s:U (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4898 1c9s:V (1.9) BS01 rna ? GO:0003723 ... Q9X6J6 10499579
    4899 1c9s:V (1.9) BS02 TRP ? GO:0003723 ... Q9X6J6 10499579
    4900 1c9s:V (1.9) BS03 TRP ? GO:0003723 ... Q9X6J6 10499579
    4901 1c9u:A (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    4902 1c9u:A (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    4903 1c9u:A (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    4904 1c9u:A (2.2) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    4905 1c9u:B (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    4906 1c9u:B (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    4907 1c9u:B (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    4908 1c9u:B (2.2) BS04 PQQ 1.1.5.2 GO:0008876 ... P13650 10508152
    4909 1c9w:A (2.4) BS01 NAP 1.1.1.21 GO:0004032 ... O08782 10651037
    4910 1c9y:A (1.9) BS01 NVA 2.1.3.3 GO:0000050 ... P00480 10813810
    4911 1c9y:A (1.9) BS02 CP 2.1.3.3 GO:0000050 ... P00480 10813810
    4912 1ca0:B (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    4913 1ca0:C (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    4914 1ca0:G (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    4915 1ca0:H (2.1) BS01 peptide 3.4.21.1 GO:0004252 ... P00766 9300481
    4916 1ca1:A (1.9) BS01 ZN 3.1.4.3 GO:0004629 ... P0C216 9699639
    4917 1ca2:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 3151019
    4918 1ca3:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    4919 1ca5:A (2.2) BS01 dna ? GO:0003677 ... P13123 11031116
    4920 1ca5:A (2.2) BS02 dna ? GO:0003677 ... P13123 11031116
    4921 1ca6:A (2.2) BS01 dna ? GO:0003677 ... P13123 11031116
    4922 1ca6:A (2.2) BS02 dna ? GO:0003677 ... P13123 11031116
    4923 1ca7:A (2.5) BS01 ENO 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 10353846
    4924 1ca7:A (2.5) BS02 ENO 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 10353846
    4925 1ca7:B (2.5) BS01 ENO 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 10353846
    4926 1ca7:B (2.5) BS02 ENO 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 10353846
    4927 1ca7:C (2.5) BS01 ENO 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 10353846
    4928 1ca7:C (2.5) BS02 ENO 5.3.2.1
    5.3.3.12    		 GO:0001516 ... P14174 10353846
    4929 1ca8:B (2.1) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    4930 1ca8:B (2.1) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9724521
    4931 1ca8:B (2.1) BS03 0KV 3.4.21.5 GO:0004252 ... P00734 9724521 PDBbind: -logKd/Ki=9.49, Ki=0.32nM
    BindingDB: IC50=0.67nM
    4932 1ca9:A (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    4933 1ca9:B (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    4934 1ca9:E (2.3) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10206649
    4935 1caa:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    4936 1cad:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    4937 1cah:A (1.88) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1474587
    4938 1cah:A (1.88) BS02 BCT 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1474587 BindingDB: Ki=85000000nM
    4939 1cai:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4940 1cai:A (1.8) BS02 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4941 1caj:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4942 1caj:A (1.9) BS02 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4943 1cak:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4944 1cak:A (1.9) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4945 1cak:A (1.9) BS03 SO4 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4946 1cal:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4947 1cam:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850
    4948 1cam:A (1.7) BS02 BCT 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 7901850 BindingDB: Ki=85000000nM
    4949 1can:A (1.9) BS01 NO3 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1336460 BindingDB: Ki=35000000nM
    4950 1cao:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1336460
    4951 1caq:A (1.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    4952 1caq:A (1.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    4953 1caq:A (1.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4954 1caq:A (1.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4955 1caq:A (1.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    4956 1caq:A (1.8) BS06 DPS 3.4.24.17 GO:0004222 ... P08254 10422833 MOAD: Ki=19nM
    PDBbind: -logKd/Ki=7.72, Ki=19nM
    4957 1cay:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15299482
    4958 1caz:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 15299482
    4959 1cb0:A (1.7) BS01 ADE 2.4.2.28 GO:0003824 ... Q13126 10404592
    4960 1cb2:A (2.0) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4961 1cb2:A (2.0) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4962 1cb2:A (2.0) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4963 1cb2:A (2.0) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4964 1cb2:A (2.0) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4965 1cb2:A (2.0) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4966 1cb2:B (2.0) BS01 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4967 1cb2:B (2.0) BS02 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4968 1cb2:B (2.0) BS03 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4969 1cb2:B (2.0) BS04 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4970 1cb2:B (2.0) BS05 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4971 1cb2:B (2.0) BS06 MAN 3.2.1.91 GO:0004553 ... P07987 8875646
    4972 1cb4:A (2.3) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    4973 1cb4:A (2.3) BS02 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    4974 1cb4:B (2.3) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    4975 1cb4:B (2.3) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 10092461
    4976 1cb6:A (2.0) BS01 CL 3.4.21.- GO:0001503 ... P02788 10089508
    4977 1cb6:A (2.0) BS02 CL 3.4.21.- GO:0001503 ... P02788 10089508
    4978 1cb7:A (2.0) BS01 COB 5.4.99.1 GO:0005515 ... P80078 10467146
    4979 1cb7:B (2.0) BS01 COB 5.4.99.1 GO:0003824 ... P80077 10467146
    4980 1cb7:C (2.0) BS01 COB 5.4.99.1 GO:0005515 ... P80078 10467146
    4981 1cb7:D (2.0) BS01 COB 5.4.99.1 GO:0003824 ... P80077 10467146
    4982 1cb8:A (1.9) BS01 MAN 4.2.2.5 GO:0003824 ... Q59288 10329169
    4983 1cb8:A (1.9) BS02 GCU 4.2.2.5 GO:0003824 ... Q59288 10329169
    4984 1cb8:A (1.9) BS03 CA 4.2.2.5 GO:0003824 ... Q59288 10329169
    4985 1cbf:A (2.4) BS01 SAH 2.1.1.271 GO:0008168 ... O87696 9665173
    4986 1cbj:A (1.65) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    4987 1cbj:A (1.65) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 10092461
    4988 1cbj:B (1.65) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    4989 1cbj:B (1.65) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 10092461
    4990 1cbk:A (2.02) BS01 SO4 2.7.6.3 GO:0003848 ... P43777 10080886
    4991 1cbk:A (2.02) BS02 ROI 2.7.6.3 GO:0003848 ... P43777 10080886
    4992 1cbk:B (2.02) BS01 SO4 2.7.6.3 GO:0003848 ... P43777 10080886
    4993 1cbk:B (2.02) BS02 ROI 2.7.6.3 GO:0003848 ... P43777 10080886
    4994 1cbl:A (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    4995 1cbl:B (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    4996 1cbl:C (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    4997 1cbl:D (1.8) BS01 HEM ? GO:0004601 ... P68871 8114097
    4998 1cbm:A (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    4999 1cbm:B (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    5000 1cbm:C (1.74) BS01 HEM ? GO:0004601 ... P68871 8114096
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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