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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    831801 9b4h:B (3.1) BS29 A1AIO ? N/A A8J9H7 38552624
    831802 9b4h:B (3.1) BS30 GLA ? N/A A8J9H7 38552624
    831803 9b4h:B (3.1) BS31 GLA ? N/A A8J9H7 38552624
    831804 9b4h:B (3.1) BS32 GLA ? N/A A8J9H7 38552624
    831805 9b4h:B (3.1) BS33 GLA ? N/A A8J9H7 38552624
    831806 9b4h:B (3.1) BS34 GLA ? N/A A8J9H7 38552624
    831807 9b4h:B (3.1) BS35 GLA ? N/A A8J9H7 38552624
    831808 9b4h:B (3.1) BS36 GLA ? N/A A8J9H7 38552624
    831809 9b4h:B (3.1) BS37 GLA ? N/A A8J9H7 38552624
    831810 9b4h:B (3.1) BS38 GLA ? N/A A8J9H7 38552624
    831811 9b4h:B (3.1) BS39 GLA ? N/A A8J9H7 38552624
    831812 9b55:B (3.23) BS01 A1AIV ? N/A P0CH07 39143218
    831813 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831814 9b56:B (3.35) BS01 A1AIV ? N/A P0CH07 39143218
    831815 9b57:B (3.37) BS01 A1AIV ? N/A P0CH07 39143218
    831816 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831817 9b59:C (3.49) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    831818 9b5a:C (3.65) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    831819 9b5b:C (3.31) BS01 A1AIV 2.3.2.26 N/A Q9UTG2 39143218
    831820 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831821 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831822 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831823 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831824 9b5d:A (2.8) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831825 9b5d:C (2.8) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831826 9b5e:A (2.81) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831827 9b5e:A (2.81) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831828 9b5e:C (2.81) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831829 9b5f:A (2.78) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831830 9b5f:A (2.78) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831831 9b5f:C (2.78) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831832 9b5g:A (2.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831833 9b5g:A (2.67) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831834 9b5g:C (2.67) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831835 9b5h:A (2.69) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    831836 9b5h:A (2.69) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    831837 9b5h:A (2.69) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831838 9b5h:C (2.69) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831839 9b5i:A (2.7) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    831840 9b5i:A (2.7) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    831841 9b5i:A (2.7) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831842 9b5j:A (2.86) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    831843 9b5j:A (2.86) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831844 9b5k:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831845 9b5k:C (3.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831846 9b5l:A (3.3) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    831847 9b5l:A (3.3) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831848 9b5l:C (3.3) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831849 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831850 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831851 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831852 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831853 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831854 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831855 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831856 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831857 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831858 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831859 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831860 9b5p:C (3.08) BS01 peptide 2.3.2.23 GO:0000151 ... P46595 39143218
    831861 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831862 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831863 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831864 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831865 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831866 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831867 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831868 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831869 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831870 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831871 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831872 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831873 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    831874 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831875 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831876 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831877 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831878 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831879 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    831880 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    831881 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    831882 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000151 ... P46595 39143218
    831883 9b8w:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831884 9b8w:A (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831885 9b8w:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831886 9b8w:B (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831887 9b8w:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831888 9b8w:C (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831889 9b8w:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831890 9b8w:D (3.1) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831891 9b8x:A (3.0) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831892 9b8x:A (3.0) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831893 9b8y:A (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831894 9b8y:A (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831895 9b8y:A (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    831896 9b8y:B (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831897 9b8y:B (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831898 9b8y:B (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    831899 9b8y:C (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831900 9b8y:C (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831901 9b8y:C (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    831902 9b8y:D (3.2) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831903 9b8y:D (3.2) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831904 9b8y:D (3.2) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    831905 9b8z:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831906 9b8z:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831907 9b8z:A (3.4) BS03 DVT ? GO:0002250 ... Q8TD43 38750366
    831908 9b90:A (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831909 9b90:A (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831910 9b90:A (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    831911 9b90:B (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831912 9b90:B (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831913 9b90:B (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    831914 9b90:C (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831915 9b90:C (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831916 9b90:C (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    831917 9b90:D (3.4) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831918 9b90:D (3.4) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831919 9b90:D (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    831920 9b91:A (3.3) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831921 9b91:A (3.3) BS02 CA ? GO:0002250 ... Q8TD43 38750366
    831922 9b91:A (3.3) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    831923 9b92:A (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831924 9b92:B (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831925 9b92:C (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831926 9b92:D (3.5) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831927 9b94:A (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831928 9b94:B (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831929 9b94:C (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831930 9b94:D (3.1) BS01 CA ? GO:0002250 ... Q8TD43 38750366
    831931 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    831932 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    831933 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    831934 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    831935 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    831936 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    831937 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    831938 9bd3:A (2.58) BS01 peptide ? N/A P43358 38907034
    831939 9bd3:C (2.58) BS01 peptide ? N/A P43358 38907034
    831940 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    831941 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    831942 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    831943 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    831944 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    831945 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    831946 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    831947 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    831948 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    831949 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    831950 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    831951 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    831952 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    831953 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    831954 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    831955 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    831956 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    831957 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    831958 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    831959 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    831960 9bfy:A (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    831961 9bfy:A (1.26) BS02 A1AOL 3.6.5.2 N/A P01116 N/A
    831962 9bfy:B (1.26) BS01 GNP 3.6.5.2 N/A P01116 N/A
    831963 9bfy:B (1.26) BS02 MG 3.6.5.2 N/A P01116 N/A
    831964 9bfy:B (1.26) BS03 A1AOL 3.6.5.2 N/A P01116 N/A
    831965 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    831966 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    831967 9bg1:A (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    831968 9bg1:A (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    831969 9bg1:A (1.51) BS03 A1AOH 3.6.5.2 N/A P01116 N/A
    831970 9bg1:B (1.51) BS01 GNP 3.6.5.2 N/A P01116 N/A
    831971 9bg1:B (1.51) BS02 MG 3.6.5.2 N/A P01116 N/A
    831972 9bg1:B (1.51) BS03 A1AOH 3.6.5.2 N/A P01116 N/A
    831973 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    831974 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    831975 9bh8:A (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831976 9bh8:B (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831977 9bh9:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831978 9bh9:A (3.5) BS02 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831979 9bh9:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831980 9bha:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831981 9bha:B (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    831982 9bhr:A (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    831983 9bhr:B (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    831984 9bhs:A (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    831985 9bhs:B (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    831986 9bju:C (2.47) BS01 peptide ? N/A P40337 N/A
    831987 9bju:F (2.47) BS01 peptide ? N/A P40337 N/A
    831988 9bju:I (2.47) BS01 peptide ? N/A P40337 N/A
    831989 9bju:K (2.47) BS01 TFA ? N/A Q15369 N/A
    831990 9bju:L (2.47) BS01 peptide ? N/A P40337 N/A
    831991 9bkj:R (2.59) BS01 peptide ? GO:0001764 ... P32238 39083706
    831992 9bkk:R (2.51) BS01 peptide ? GO:0001764 ... P32238 39083706
    831993 9bkl:A (1.7) BS01 CO ? GO:0009055 ... P24297 N/A
    831994 9bkp:A (1.8) BS01 FE ? GO:0009055 ... P24297 N/A
    831995 9bkt:A (1.8) BS01 FE2 ? GO:0009055 ... P24297 N/A
    831996 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    831997 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    831998 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    831999 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    832000 9blg:A (2.06) BS01 A1AQ1 3.1.3.48 N/A Q06124 37269335
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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