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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    808801 8r2g:D (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    808802 8r2g:E (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    808803 8r2g:G (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    808804 8r2g:H (3.45) BS01 peptide ? GO:0000150 ... Q14565 N/A
    808805 8r2h:A (2.42) BS01 MG 2.2.1.7 N/A Q8IDW0 39103329
    808806 8r2h:A (2.42) BS02 TPP 2.2.1.7 N/A Q8IDW0 39103329
    808807 8r2h:B (2.42) BS01 MG 2.2.1.7 N/A Q8IDW0 39103329
    808808 8r2h:B (2.42) BS02 TPP 2.2.1.7 N/A Q8IDW0 39103329
    808809 8r2i:A (2.9) BS01 peptide 1.10.3.9 GO:0005506 ... P07753 38322422
    808810 8r2i:A (2.9) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 38322422
    808811 8r2i:A (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    808812 8r2i:A (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    808813 8r2i:A (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P07753 38322422
    808814 8r2i:A (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    808815 8r2i:A (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    808816 8r2i:A (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    808817 8r2i:A (2.9) BS09 PHO 1.10.3.9 GO:0005506 ... P07753 38322422
    808818 8r2i:A (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    808819 8r2i:B (2.9) BS01 CLA ? GO:0009507 ... P37255 38322422
    808820 8r2i:B (2.9) BS02 CLA ? GO:0009507 ... P37255 38322422
    808821 8r2i:B (2.9) BS03 CLA ? GO:0009507 ... P37255 38322422
    808822 8r2i:B (2.9) BS04 CLA ? GO:0009507 ... P37255 38322422
    808823 8r2i:B (2.9) BS05 CLA ? GO:0009507 ... P37255 38322422
    808824 8r2i:B (2.9) BS06 CLA ? GO:0009507 ... P37255 38322422
    808825 8r2i:B (2.9) BS07 CLA ? GO:0009507 ... P37255 38322422
    808826 8r2i:B (2.9) BS08 CLA ? GO:0009507 ... P37255 38322422
    808827 8r2i:B (2.9) BS09 CLA ? GO:0009507 ... P37255 38322422
    808828 8r2i:B (2.9) BS10 CLA ? GO:0009507 ... P37255 38322422
    808829 8r2i:B (2.9) BS11 CLA ? GO:0009507 ... P37255 38322422
    808830 8r2i:B (2.9) BS12 CLA ? GO:0009507 ... P37255 38322422
    808831 8r2i:B (2.9) BS13 CLA ? GO:0009507 ... P37255 38322422
    808832 8r2i:B (2.9) BS14 CLA ? GO:0009507 ... P37255 38322422
    808833 8r2i:B (2.9) BS15 CLA ? GO:0009507 ... P37255 38322422
    808834 8r2i:B (2.9) BS16 CLA ? GO:0009507 ... P37255 38322422
    808835 8r2i:C (2.9) BS01 peptide ? GO:0005737 ... P10898 38322422
    808836 8r2i:C (2.9) BS02 CLA ? GO:0005737 ... P10898 38322422
    808837 8r2i:C (2.9) BS03 CLA ? GO:0005737 ... P10898 38322422
    808838 8r2i:C (2.9) BS04 CLA ? GO:0005737 ... P10898 38322422
    808839 8r2i:C (2.9) BS05 CLA ? GO:0005737 ... P10898 38322422
    808840 8r2i:C (2.9) BS06 CLA ? GO:0005737 ... P10898 38322422
    808841 8r2i:C (2.9) BS07 CLA ? GO:0005737 ... P10898 38322422
    808842 8r2i:C (2.9) BS08 CLA ? GO:0005737 ... P10898 38322422
    808843 8r2i:C (2.9) BS09 CLA ? GO:0005737 ... P10898 38322422
    808844 8r2i:C (2.9) BS10 CLA ? GO:0005737 ... P10898 38322422
    808845 8r2i:C (2.9) BS11 CLA ? GO:0005737 ... P10898 38322422
    808846 8r2i:C (2.9) BS12 CLA ? GO:0005737 ... P10898 38322422
    808847 8r2i:C (2.9) BS13 CLA ? GO:0005737 ... P10898 38322422
    808848 8r2i:C (2.9) BS14 CLA ? GO:0005737 ... P10898 38322422
    808849 8r2i:D (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 38322422
    808850 8r2i:D (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    808851 8r2i:D (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    808852 8r2i:D (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... P06007 38322422
    808853 8r2i:D (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    808854 8r2i:D (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    808855 8r2i:D (2.9) BS07 PHO 1.10.3.9 GO:0005506 ... P06007 38322422
    808856 8r2i:D (2.9) BS08 BCT 1.10.3.9 GO:0005506 ... P06007 38322422
    808857 8r2i:D (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    808858 8r2i:D (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    808859 8r2i:E (2.9) BS01 HEM ? GO:0005506 ... P48268 38322422
    808860 8r2i:F (2.9) BS01 HEM ? GO:0009523 ... Q08363 38322422
    808861 8r2i:H (2.9) BS01 CLA ? GO:0009523 ... P22666 38322422
    808862 8r2i:H (2.9) BS02 CLA ? GO:0009523 ... P22666 38322422
    808863 8r2i:H (2.9) BS03 CLA ? GO:0009523 ... P22666 38322422
    808864 8r2i:H (2.9) BS04 CLA ? GO:0009523 ... P22666 38322422
    808865 8r2i:H (2.9) BS05 CLA ? GO:0009523 ... P22666 38322422
    808866 8r2i:K (2.9) BS01 CLA ? GO:0009523 ... P18263 38322422
    808867 8r34:A (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    808868 8r34:B (2.62) BS01 PO4 ? GO:0005315 ... P39535 38688287
    808869 8r37:A (1.48) BS01 FCN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    808870 8r37:A (1.48) BS02 MN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    808871 8r37:B (1.48) BS01 FCN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    808872 8r37:B (1.48) BS02 MN 2.5.1.18 GO:0004364 ... A0A086IRG1 38203259
    808873 8r3b:A (1.66) BS01 EVB ? N/A A0A140UHM9 38227741
    808874 8r3c:A (1.58) BS01 EVB ? N/A A0A140UHM9 38227741
    808875 8r3c:B (1.58) BS01 EVB ? N/A A0A140UHM9 38227741
    808876 8r3c:E (1.58) BS01 EVB ? N/A A0A140UHM9 38227741
    808877 8r3f:A (1.55) BS01 XS8 ? GO:0003700 ... Q13469 38396281
    808878 8r3f:B (1.55) BS01 XS8 ? GO:0003700 ... Q13469 38396281
    808879 8r3k:A (3.43) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    808880 8r3k:A (3.43) BS02 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    808881 8r3k:B (3.43) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808882 8r3k:B (3.43) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808883 8r3k:B (3.43) BS03 POP 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808884 8r3k:B (3.43) BS04 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808885 8r3k:B (3.43) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808886 8r3k:C (3.43) BS01 rna ? GO:0001172 ... X5F427 38316757
    808887 8r3k:C (3.43) BS02 rna ? GO:0001172 ... X5F427 38316757
    808888 8r3l:A (3.25) BS01 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    808889 8r3l:A (3.25) BS02 rna 3.1.-.- GO:0003723 ... M9TI86 38316757
    808890 8r3l:A (3.25) BS03 peptide 3.1.-.- GO:0003723 ... M9TI86 38316757
    808891 8r3l:B (3.25) BS01 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808892 8r3l:B (3.25) BS02 rna 2.7.7.48 GO:0000166 ... M9TLW3 38316757
    808893 8r3l:C (3.25) BS01 rna ? GO:0001172 ... X5F427 38316757
    808894 8r3o:A (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808895 8r3o:A (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    808896 8r3o:A (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808897 8r3o:B (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808898 8r3o:B (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808899 8r3o:B (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    808900 8r3o:C (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808901 8r3o:C (2.1) BS02 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    808902 8r3o:C (2.1) BS03 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808903 8r3o:D (2.1) BS01 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808904 8r3o:D (2.1) BS02 TPP 2.2.1.1 GO:0004802 ... P43757 N/A
    808905 8r3o:D (2.1) BS03 MG 2.2.1.1 GO:0004802 ... P43757 N/A
    808906 8r3p:A (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808907 8r3p:A (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808908 8r3p:A (2.9) BS03 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808909 8r3p:B (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808910 8r3p:B (2.9) BS02 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808911 8r3p:B (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808912 8r3p:C (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808913 8r3p:C (2.9) BS02 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808914 8r3p:C (2.9) BS03 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808915 8r3p:D (2.9) BS01 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808916 8r3p:D (2.9) BS02 TPP 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808917 8r3p:D (2.9) BS03 MG 2.2.1.1 GO:0004802 ... A0A133CKH8 N/A
    808918 8r3q:A (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808919 8r3q:A (1.88) BS02 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808920 8r3q:A (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808921 8r3q:B (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808922 8r3q:B (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808923 8r3q:B (1.88) BS03 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808924 8r3q:C (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808925 8r3q:C (1.88) BS02 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808926 8r3q:C (1.88) BS03 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808927 8r3q:D (1.88) BS01 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808928 8r3q:D (1.88) BS02 TPP 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808929 8r3q:D (1.88) BS03 MG 2.2.1.1 GO:0004802 ... C6KSV3 N/A
    808930 8r3r:A (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808931 8r3r:A (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    808932 8r3r:A (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808933 8r3r:B (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808934 8r3r:B (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808935 8r3r:B (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    808936 8r3r:C (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808937 8r3r:C (2.35) BS02 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    808938 8r3r:C (2.35) BS03 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808939 8r3r:D (2.35) BS01 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808940 8r3r:D (2.35) BS02 TPP 2.2.1.1 GO:0004802 ... P22976 N/A
    808941 8r3r:D (2.35) BS03 MG 2.2.1.1 GO:0004802 ... P22976 N/A
    808942 8r3s:A (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808943 8r3s:A (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808944 8r3s:A (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808945 8r3s:B (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808946 8r3s:B (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808947 8r3s:B (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808948 8r3s:C (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808949 8r3s:C (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808950 8r3s:C (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808951 8r3s:D (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808952 8r3s:D (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808953 8r3s:D (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808954 8r3s:E (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808955 8r3s:E (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808956 8r3s:E (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808957 8r3s:F (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808958 8r3s:F (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808959 8r3s:F (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808960 8r3s:G (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808961 8r3s:G (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808962 8r3s:G (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808963 8r3s:H (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808964 8r3s:H (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808965 8r3s:H (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808966 8r3s:I (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808967 8r3s:I (2.8) BS02 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808968 8r3s:I (2.8) BS03 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808969 8r3s:J (2.8) BS01 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808970 8r3s:J (2.8) BS02 TPP 2.2.1.1 GO:0004802 ... P99161 N/A
    808971 8r3s:J (2.8) BS03 MG 2.2.1.1 GO:0004802 ... P99161 N/A
    808972 8r3v:12 (3.28) BS01 rna ? GO:0000027 ... P0A7M2 38409277
    808973 8r3v:32 (3.28) BS01 rna ? GO:0000027 ... P0AG51 38409277
    808974 8r3v:32 (3.28) BS02 rna ? GO:0000027 ... P0AG51 38409277
    808975 8r3v:4 (3.28) BS01 rna ? GO:0002181 ... P0A7M9 38409277
    808976 8r3v:4 (3.28) BS02 rna ? GO:0002181 ... P0A7M9 38409277
    808977 8r3v:4 (3.28) BS03 ZN ? GO:0002181 ... P0A7M9 38409277
    808978 8r3v:62 (3.28) BS01 rna ? GO:0002181 ... P0A7Q1 38409277
    808979 8r3v:B (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    808980 8r3v:B (3.28) BS02 peptide ? GO:0000028 ... P0A7V0 38409277
    808981 8r3v:B2 (3.28) BS01 rna ? GO:0000028 ... P0A7V0 38409277
    808982 8r3v:C1 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    808983 8r3v:C1 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    808984 8r3v:C2 (3.28) BS01 rna ? GO:0000028 ... P0A7V3 38409277
    808985 8r3v:C2 (3.28) BS02 rna ? GO:0000028 ... P0A7V3 38409277
    808986 8r3v:D1 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    808987 8r3v:D2 (3.28) BS01 rna ? GO:0000028 ... P0A7V8 38409277
    808988 8r3v:E1 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    808989 8r3v:E1 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    808990 8r3v:E2 (3.28) BS01 rna ? GO:0000028 ... P0A7W1 38409277
    808991 8r3v:E2 (3.28) BS02 rna ? GO:0000028 ... P0A7W1 38409277
    808992 8r3v:F1 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    808993 8r3v:F2 (3.28) BS01 rna ? GO:0002181 ... P02358 38409277
    808994 8r3v:G1 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    808995 8r3v:G2 (3.28) BS01 rna ? GO:0000028 ... P02359 38409277
    808996 8r3v:G2 (3.28) BS02 rna ? GO:0000028 ... P02359 38409277
    808997 8r3v:G2 (3.28) BS03 rna ? GO:0000028 ... P02359 38409277
    808998 8r3v:H1 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    808999 8r3v:H2 (3.28) BS01 rna ? GO:0000028 ... P0A7W7 38409277
    809000 8r3v:I1 (3.28) BS01 rna ? GO:0000049 ... P0A7X3 38409277
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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