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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27001 1kqc:B (1.8) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27002 1kqc:C (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27003 1kqc:C (1.8) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27004 1kqc:D (1.8) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27005 1kqc:D (1.8) BS02 ACT 1.-.-.- GO:0005829 ... Q01234 11805110
    27006 1kqc:D (1.8) BS03 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27007 1kqd:A (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27008 1kqd:A (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27009 1kqd:B (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27010 1kqd:B (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27011 1kqd:C (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27012 1kqd:C (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27013 1kqd:D (1.9) BS01 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27014 1kqd:D (1.9) BS02 FMN 1.-.-.- GO:0005829 ... Q01234 11805110
    27015 1kqf:A (1.6) BS01 SF4 1.17.5.3 GO:0008863 ... P24183 11884747
    27016 1kqf:A (1.6) BS02 MGD 1.17.5.3 GO:0008863 ... P24183 11884747
    27017 1kqf:A (1.6) BS03 MGD 1.17.5.3 GO:0008863 ... P24183 11884747
    27018 1kqf:B (1.6) BS01 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27019 1kqf:B (1.6) BS02 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27020 1kqf:B (1.6) BS03 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27021 1kqf:B (1.6) BS04 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27022 1kqf:B (1.6) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27023 1kqf:C (1.6) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27024 1kqf:C (1.6) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27025 1kqg:A (2.8) BS01 SF4 1.17.5.3 GO:0008863 ... P24183 11884747
    27026 1kqg:A (2.8) BS02 MGD 1.17.5.3 GO:0008863 ... P24183 11884747
    27027 1kqg:A (2.8) BS03 MGD 1.17.5.3 GO:0008863 ... P24183 11884747
    27028 1kqg:B (2.8) BS01 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27029 1kqg:B (2.8) BS02 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27030 1kqg:B (2.8) BS03 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27031 1kqg:B (2.8) BS04 SF4 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27032 1kqg:B (2.8) BS05 HEM 1.2.1.2 GO:0005886 ... P0AAJ3 11884747
    27033 1kqg:C (2.8) BS01 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27034 1kqg:C (2.8) BS02 HEM 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27035 1kqg:C (2.8) BS03 HQO 1.2.1.2 GO:0005515 ... P0AEK7 11884747
    27036 1kqj:A (1.7) BS01 SF4 3.2.2.31 GO:0003677 ... P17802 11900536
    27037 1kqk:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... O32220 11922674
    27038 1kqm:A (3.0) BS01 MG ? GO:0003774 ... P24733 12297624
    27039 1kqm:A (3.0) BS02 ANP ? GO:0003774 ... P24733 12297624
    27040 1kqm:B (3.0) BS01 MG ? GO:0005509 ... P13543 12297624
    27041 1kqm:C (3.0) BS01 CA ? GO:0005509 ... P07291 12297624
    27042 1kqn:A (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27043 1kqn:B (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27044 1kqn:C (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27045 1kqn:D (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27046 1kqn:E (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27047 1kqn:F (2.2) BS01 NAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27048 1kqo:A (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27049 1kqo:B (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27050 1kqo:C (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27051 1kqo:D (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27052 1kqo:E (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27053 1kqo:F (2.5) BS01 DND 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27054 1kqp:A (1.03) BS01 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    27055 1kqp:A (1.03) BS02 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27056 1kqp:A (1.03) BS03 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    27057 1kqp:A (1.03) BS04 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27058 1kqp:B (1.03) BS01 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27059 1kqp:B (1.03) BS02 MG 6.3.1.5 GO:0003952 ... P08164 12077433
    27060 1kqp:B (1.03) BS03 ADJ 6.3.1.5 GO:0003952 ... P08164 12077433
    27061 1kqp:B (1.03) BS04 POP 6.3.1.5 GO:0003952 ... P08164 12077433
    27062 1kqq:A (-1.00) BS01 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    27063 1kqq:A (-1.00) BS02 dna ? GO:0003677 ... Q24573 11867548 PDBbind: Kd=28nM
    27064 1kqr:A (1.4) BS01 MNA ? GO:0019028 ... P12473 11867517
    27065 1kqs:1 (3.1) BS01 rna ? GO:0003735 ... P22452 11828326
    27066 1kqs:2 (3.1) BS01 rna ? GO:0000049 ... P32411 11828326
    27067 1kqs:2 (3.1) BS02 MG ? GO:0000049 ... P32411 11828326
    27068 1kqs:A (3.1) BS01 rna ? GO:0002181 ... P20276 11828326
    27069 1kqs:B (3.1) BS01 rna ? GO:0003723 ... P20279 11828326
    27070 1kqs:C (3.1) BS01 rna ? GO:0003723 ... P12735 11828326
    27071 1kqs:D (3.1) BS01 rna ? GO:0000049 ... P14124 11828326
    27072 1kqs:D (3.1) BS02 rna ? GO:0000049 ... P14124 11828326
    27073 1kqs:E (3.1) BS01 rna ? GO:0002181 ... P14135 11828326
    27074 1kqs:F (3.1) BS01 rna ? GO:0001682 ... P12743 11828326
    27075 1kqs:H (3.1) BS01 rna ? GO:0000027 ... P60617 11828326
    27076 1kqs:I (3.1) BS01 rna ? GO:0003729 ... P29198 11828326
    27077 1kqs:J (3.1) BS01 rna ? GO:0003735 ... P22450 11828326
    27078 1kqs:K (3.1) BS01 rna ? GO:0003735 ... P12737 11828326
    27079 1kqs:L (3.1) BS01 rna ? GO:0002181 ... P60618 11828326
    27080 1kqs:M (3.1) BS01 rna ? GO:0000027 ... P14123 11828326
    27081 1kqs:M (3.1) BS02 rna ? GO:0000027 ... P14123 11828326
    27082 1kqs:N (3.1) BS01 rna ? GO:0003723 ... P12733 11828326
    27083 1kqs:O (3.1) BS01 rna ? GO:0003723 ... P14119 11828326
    27084 1kqs:P (3.1) BS01 rna ? GO:0003735 ... P12734 11828326
    27085 1kqs:P (3.1) BS02 rna ? GO:0003735 ... P12734 11828326
    27086 1kqs:Q (3.1) BS01 rna ? GO:0002181 ... P10970 11828326
    27087 1kqs:R (3.1) BS01 rna ? GO:0000027 ... P12732 11828326
    27088 1kqs:S (3.1) BS01 rna ? GO:0002181 ... P10972 11828326
    27089 1kqs:S (3.1) BS02 MG ? GO:0002181 ... P10972 11828326
    27090 1kqs:T (3.1) BS01 rna ? GO:0003735 ... P14116 11828326
    27091 1kqs:U (3.1) BS01 rna ? GO:0003735 ... P10971 11828326
    27092 1kqs:V (3.1) BS01 rna ? GO:0000463 ... P14121 11828326
    27093 1kqs:V (3.1) BS02 rna ? GO:0000463 ... P14121 11828326
    27094 1kqs:W (3.1) BS01 rna ? GO:0002181 ... P18138 11828326
    27095 1kqs:X (3.1) BS01 rna ? GO:0000166 ... P12736 11828326
    27096 1kqs:X (3.1) BS02 MG ? GO:0000166 ... P12736 11828326
    27097 1kqs:Y (3.1) BS01 rna ? GO:0003735 ... P60619 11828326
    27098 1kqs:Z (3.1) BS01 rna ? GO:0003723 ... P32410 11828326
    27099 1kqu:A (2.1) BS01 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    27100 1kqu:A (2.1) BS02 CA 3.1.1.4 GO:0004623 ... P14555 12616631
    27101 1kqu:A (2.1) BS03 BR4 3.1.1.4 GO:0004623 ... P14555 12616631
    27102 1kqw:A (1.38) BS01 RTL ? GO:0005504 ... Q8UVG6 12162964
    27103 1kr2:A (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27104 1kr2:B (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27105 1kr2:C (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27106 1kr2:D (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27107 1kr2:E (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27108 1kr2:F (2.3) BS01 TAD 2.7.7.1
    2.7.7.18    		 GO:0000309 ... Q9HAN9 11788603
    27109 1kr3:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27110 1kr3:A (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27111 1kr3:A (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    27112 1kr3:B (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27113 1kr3:B (2.5) BS02 ZN 3.5.2.6 GO:0008270 ... P25910 12019104
    27114 1kr3:B (2.5) BS03 113 3.5.2.6 GO:0008270 ... P25910 12019104 MOAD: Ki=10uM
    27115 1kr5:A (2.1) BS01 SAH 2.1.1.77 GO:0004719 ... P22061 11792715
    27116 1kr6:A (1.8) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27117 1kr6:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27118 1kr6:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27119 1kr6:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27120 1kr6:A (1.8) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    27121 1kr6:A (1.8) BS06 DGL 3.4.24.27 GO:0004222 ... P00800 N/A
    27122 1kr7:A (1.5) BS01 HEM ? GO:0005344 ... O76242 12015154
    27123 1kr7:A (1.5) BS02 OXY ? GO:0005344 ... O76242 12015154
    27124 1krb:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27125 1krb:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27126 1krc:C (2.5) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27127 1krc:C (2.5) BS02 NI 3.5.1.5 GO:0005515 ... P18314 8718850
    27128 1kre:A (2.2) BS01 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    27129 1kre:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    27130 1kre:B (2.2) BS02 DMJ 3.2.1.113 GO:0004571 ... P31723 11714724
    27131 1krf:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    27132 1krf:A (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    27133 1krf:B (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    27134 1krf:B (2.2) BS02 KIF 3.2.1.113 GO:0004571 ... P31723 11714724
    27135 1krh:A (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    27136 1krh:A (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    27137 1krh:B (1.5) BS01 FES 1.18.1.3 GO:0008860 ... P07771 12051836
    27138 1krh:B (1.5) BS02 FAD 1.18.1.3 GO:0008860 ... P07771 12051836
    27139 1krj:A (2.0) BS01 K 1.11.1.5 GO:0004601 ... P00431 10608846
    27140 1krj:A (2.0) BS02 HEM 1.11.1.5 GO:0004601 ... P00431 10608846
    27141 1krm:A (2.5) BS01 ZN 3.5.4.4 GO:0004000 ... P56658 12554940
    27142 1krm:A (2.5) BS02 PRH 3.5.4.4 GO:0004000 ... P56658 12554940
    27143 1kro:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27144 1kro:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27145 1kro:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27146 1kro:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27147 1kro:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    27148 1kro:A (1.7) BS06 DTH 3.4.24.27 GO:0004222 ... P00800 N/A
    27149 1krp:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9514742
    27150 1krp:A (2.2) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27151 1krp:A (2.2) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9514742
    27152 1krr:A (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27153 1krr:A (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27154 1krr:B (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27155 1krr:B (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27156 1krr:C (2.5) BS01 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27157 1krr:C (2.5) BS02 ACO 2.3.1.18 GO:0005737 ... P07464 11937062
    27158 1kru:A (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27159 1kru:A (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27160 1kru:A (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27161 1kru:A (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27162 1kru:A (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27163 1kru:A (2.8) BS06 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27164 1kru:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27165 1kru:B (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27166 1kru:B (2.8) BS03 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27167 1kru:B (2.8) BS04 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27168 1kru:B (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27169 1kru:C (2.8) BS01 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27170 1kru:C (2.8) BS02 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27171 1kru:C (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27172 1kru:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27173 1kru:C (2.8) BS05 IPT 2.3.1.18 GO:0005737 ... P07464 11937062
    27174 1krv:A (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27175 1krv:A (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27176 1krv:A (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27177 1krv:A (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27178 1krv:B (2.8) BS01 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27179 1krv:B (2.8) BS02 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27180 1krv:B (2.8) BS03 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27181 1krv:B (2.8) BS04 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27182 1krv:C (2.8) BS01 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27183 1krv:C (2.8) BS02 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27184 1krv:C (2.8) BS03 147 2.3.1.18 GO:0005737 ... P07464 11937062
    27185 1krv:C (2.8) BS04 COA 2.3.1.18 GO:0005737 ... P07464 11937062
    27186 1krx:A (-1.00) BS01 BEF ? GO:0000160 ... P41789 12885241
    27187 1ks4:A (2.5) BS01 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    27188 1ks4:A (2.5) BS02 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    27189 1ks4:A (2.5) BS03 PD 3.2.1.4 GO:0000272 ... O74705 11914491
    27190 1ks7:A (1.7) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27191 1ks7:A (1.7) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27192 1ks7:A (1.7) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27193 1ks7:A (1.7) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    27194 1ks7:A (1.7) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    27195 1ks7:A (1.7) BS06 DAS 3.4.24.27 GO:0004222 ... P00800 N/A
    27196 1ksc:A (1.55) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    27197 1ksd:A (1.6) BS01 CA 3.2.1.4 GO:0004553 ... O77044 11914490
    27198 1ksf:X (2.6) BS01 MG ? GO:0004176 ... P0ABH9 12205096
    27199 1ksf:X (2.6) BS02 ADP ? GO:0004176 ... P0ABH9 12205096
    27200 1ksf:X (2.6) BS03 ADP ? GO:0004176 ... P0ABH9 12205096
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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