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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23201 1je8:E (2.12) BS02 dna ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    23202 1je8:F (2.12) BS01 dna ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    23203 1je8:F (2.12) BS02 dna ? GO:0003677 ... P0AF28 12352954 PDBbind: Kd=0.15nM
    23204 1jea:A (2.0) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    23205 1jea:A (2.0) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    23206 1jeb:A (2.1) BS01 HEM ? GO:0004601 ... P02008 11747442
    23207 1jeb:B (2.1) BS01 HEM ? GO:0005344 ... P02088 11747442
    23208 1jeb:C (2.1) BS01 HEM ? GO:0004601 ... P02008 11747442
    23209 1jeb:D (2.1) BS01 HEM ? GO:0005344 ... P02088 11747442
    23210 1jec:A (2.5) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    23211 1jec:A (2.5) BS02 SO4 2.7.7.4 GO:0000096 ... P08536 11700067
    23212 1jec:A (2.5) BS03 THJ 2.7.7.4 GO:0000096 ... P08536 11700067
    23213 1jed:A (2.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    23214 1jed:A (2.95) BS02 ADP 2.7.7.4 GO:0000096 ... P08536 11700067
    23215 1jed:B (2.95) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    23216 1jed:B (2.95) BS02 ADP 2.7.7.4 GO:0000096 ... P08536 11700067
    23217 1jee:A (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    23218 1jee:A (2.8) BS02 LCO 2.7.7.4 GO:0000096 ... P08536 11700067
    23219 1jee:A (2.8) BS03 POP 2.7.7.4 GO:0000096 ... P08536 11700067
    23220 1jee:A (2.8) BS04 ADX 2.7.7.4 GO:0000096 ... P08536 11700067
    23221 1jee:B (2.8) BS01 MG 2.7.7.4 GO:0000096 ... P08536 11700067
    23222 1jee:B (2.8) BS02 LCO 2.7.7.4 GO:0000096 ... P08536 11700067
    23223 1jee:B (2.8) BS03 ADX 2.7.7.4 GO:0000096 ... P08536 11700067
    23224 1jee:B (2.8) BS04 POP 2.7.7.4 GO:0000096 ... P08536 11700067
    23225 1jeg:A (-1.00) BS01 peptide 2.7.10.2 N/A P41241 11685249
    23226 1jeh:A (2.4) BS01 FAD 1.8.1.4 GO:0004148 ... P09624 9538259
    23227 1jeh:B (2.4) BS01 FAD 1.8.1.4 GO:0004148 ... P09624 9538259
    23228 1jep:A (2.1) BS01 DFL 5.5.1.6 GO:0009813 ... P28012 11698411
    23229 1jep:B (2.1) BS01 DFL 5.5.1.6 GO:0009813 ... P28012 11698411
    23230 1jer:A (1.6) BS01 CU ? GO:0009055 ... P29602 8931136
    23231 1jet:A (1.2) BS01 peptide ? GO:0015031 ... P06202 8946852
    23232 1jeu:A (1.25) BS01 peptide ? GO:0015031 ... P06202 8946852
    23233 1jev:A (1.3) BS01 peptide ? GO:0015031 ... P06202 8946852
    23234 1jex:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 N/A
    23235 1jey:A (2.5) BS01 dna 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 11493912 PDBbind: Kd=0.15nM
    23236 1jey:A (2.5) BS02 dna 3.6.4.-
    4.2.99.-    		 GO:0000723 ... P12956 11493912 PDBbind: Kd=0.15nM
    23237 1jey:B (2.5) BS01 dna 3.6.4.- GO:0000723 ... P13010 11493912 PDBbind: Kd=0.15nM
    23238 1jey:B (2.5) BS02 dna 3.6.4.- GO:0000723 ... P13010 11493912 PDBbind: Kd=0.15nM
    23239 1jf0:A (1.82) BS01 CZH ? GO:0005509 ... Q27709 N/A
    23240 1jf1:A (1.85) BS01 peptide ? N/A P04439 11544315
    23241 1jf2:A (1.72) BS01 CZH ? GO:0005509 ... Q27709 12755603
    23242 1jf3:A (1.4) BS01 HEM ? GO:0001666 ... P02216 12211015
    23243 1jf4:A (1.4) BS01 HEM ? GO:0001666 ... P15447 12211015
    23244 1jf5:A (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    23245 1jf5:B (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    23246 1jf6:A (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    23247 1jf6:B (3.2) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 11527532
    23248 1jf7:B (2.2) BS01 TBH 3.1.3.48 GO:0004725 ... P18031 11806712
    23249 1jf8:A (1.12) BS01 BCT 1.20.4.4 GO:0004725 ... P0A006 11573087
    23250 1jf9:A (2.0) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16    		 GO:0001887 ... P77444 11827487
    23251 1jfb:A (1.0) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11752781
    23252 1jfc:A (1.05) BS01 HEM 1.7.1.14 GO:0004497 ... P23295 11752781
    23253 1jfd:A (2.2) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9237692
    23254 1jfd:B (2.2) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9237692
    23255 1jff:A (3.5) BS01 GTP 3.6.5.- GO:0000226 ... P81947 11700061
    23256 1jff:B (3.5) BS01 GDP ? GO:0000226 ... Q6B856 11700061
    23257 1jff:B (3.5) BS02 TA1 ? GO:0000226 ... Q6B856 11700061
    23258 1jfg:B (2.5) BS01 MG 4.2.3.6 GO:0016106 ... P13513 11698643
    23259 1jfg:B (2.5) BS02 MG 4.2.3.6 GO:0016106 ... P13513 11698643
    23260 1jfg:B (2.5) BS03 POP 4.2.3.6 GO:0016106 ... P13513 11698643
    23261 1jfh:A (2.03) BS01 MA3 3.2.1.1 GO:0003824 ... P00690 9385631 PDBbind: -logKd/Ki=2.05, Ki=9mM
    23262 1jfh:A (2.03) BS02 MA2 3.2.1.1 GO:0003824 ... P00690 9385631 PDBbind: -logKd/Ki=2.05, Ki=9mM
    23263 1jfh:A (2.03) BS03 MA1 3.2.1.1 GO:0003824 ... P00690 9385631
    23264 1jfh:A (2.03) BS04 MA1 3.2.1.1 GO:0003824 ... P00690 9385631
    23265 1jfh:A (2.03) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 9385631
    23266 1jfh:A (2.03) BS06 CA 3.2.1.1 GO:0003824 ... P00690 9385631
    23267 1jfi:B (2.62) BS01 dna ? GO:0000122 ... Q01658 11461703
    23268 1jfi:B (2.62) BS02 dna ? GO:0000122 ... Q01658 11461703
    23269 1jfi:C (2.62) BS01 dna ? GO:0003677 ... P20226 11461703
    23270 1jfi:C (2.62) BS02 dna ? GO:0003677 ... P20226 11461703
    23271 1jfk:A (-1.00) BS01 CA ? GO:0001891 ... P38505 11724551
    23272 1jfk:A (-1.00) BS02 CA ? GO:0001891 ... P38505 11724551
    23273 1jfk:A (-1.00) BS03 CA ? GO:0001891 ... P38505 11724551
    23274 1jfk:A (-1.00) BS04 CA ? GO:0001891 ... P38505 11724551
    23275 1jfp:A (-1.00) BS01 RET ? GO:0000139 ... P02699 11570894
    23276 1jfs:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2.2nM
    23277 1jfs:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    23278 1jft:A (2.5) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=0.7nM
    23279 1jft:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    23280 1jfz:A (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23281 1jfz:B (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23282 1jfz:C (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23283 1jfz:D (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    23284 1jg0:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    23285 1jg0:A (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    23286 1jg0:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    23287 1jg0:B (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    23288 1jg1:A (1.2) BS01 SAH 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23289 1jg2:A (1.5) BS01 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23290 1jg3:A (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23291 1jg3:A (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23292 1jg3:B (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23293 1jg3:B (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23294 1jg4:A (1.5) BS01 SAM 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    23295 1jg6:A (1.9) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23296 1jg7:A (1.65) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    23297 1jg8:A (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23298 1jg8:B (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23299 1jg8:B (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23300 1jg8:C (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23301 1jg8:D (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23302 1jg8:D (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    23303 1jg9:A (1.66) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23304 1jg9:A (1.66) BS02 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23305 1jgc:A (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    23306 1jgc:B (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    23307 1jgc:C (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    23308 1jgd:A (1.9) BS01 peptide ? N/A P01889 14555655
    23309 1jge:A (2.1) BS01 peptide ? N/A P01889 12244049
    23310 1jgg:A (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    23311 1jgg:A (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    23312 1jgg:B (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    23313 1jgg:B (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    23314 1jgi:A (2.0) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23315 1jgi:A (2.0) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    23316 1jgj:A (2.4) BS01 RET ? GO:0005216 ... P42196 11452084
    23317 1jgl:L (2.15) BS01 EST ? N/A Q7TS98 11451948 MOAD: Kd=2nM
    PDBbind: -logKd/Ki=8.70, Kd=2nM
    23318 1jgm:A (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23319 1jgm:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23320 1jgm:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    23321 1jgm:B (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23322 1jgm:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    23323 1jgm:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    23324 1jgn:A (-1.00) BS01 peptide ? GO:0003723 ... P11940 14685257
    23325 1jgo:J (5.6) BS01 rna ? GO:0000028 ... P17291 11511350
    23326 1jgp:J (7.0) BS01 rna ? GO:0000028 ... P17291 11511350
    23327 1jgq:J (5.0) BS01 rna ? GO:0000028 ... P17291 11511350
    23328 1jgt:A (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23329 1jgt:A (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23330 1jgt:A (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23331 1jgt:B (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23332 1jgt:B (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23333 1jgt:B (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    23334 1jgu:H (1.8) BS01 HBC ? N/A Q91Z05 11724535
    23335 1jgu:L (1.8) BS01 HBC ? N/A Q52L64 11724535
    23336 1jgw:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23337 1jgw:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23338 1jgw:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23339 1jgw:L (2.8) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23340 1jgw:L (2.8) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23341 1jgw:L (2.8) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23342 1jgw:L (2.8) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    23343 1jgw:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23344 1jgw:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23345 1jgw:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23346 1jgw:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23347 1jgw:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23348 1jgw:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23349 1jgw:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23350 1jgw:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23351 1jgx:L (3.01) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23352 1jgx:L (3.01) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23353 1jgx:L (3.01) BS03 BCL ? GO:0009772 ... P0C0Y8 11526320
    23354 1jgx:L (3.01) BS04 BPH ? GO:0009772 ... P0C0Y8 11526320
    23355 1jgx:L (3.01) BS05 FE ? GO:0009772 ... P0C0Y8 11526320
    23356 1jgx:L (3.01) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23357 1jgx:M (3.01) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23358 1jgx:M (3.01) BS02 BCL ? GO:0009772 ... P0C0Y9 11526320
    23359 1jgx:M (3.01) BS03 BPH ? GO:0009772 ... P0C0Y9 11526320
    23360 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    23361 1jgx:M (3.01) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23362 1jgx:M (3.01) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23363 1jgx:M (3.01) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23364 1jgx:M (3.01) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23365 1jgy:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23366 1jgy:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23367 1jgy:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23368 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23369 1jgy:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23370 1jgy:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23371 1jgy:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    23372 1jgy:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23373 1jgy:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23374 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23375 1jgy:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23376 1jgy:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23377 1jgy:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23378 1jgy:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23379 1jgy:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23380 1jgz:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23381 1jgz:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23382 1jgz:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23383 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23384 1jgz:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23385 1jgz:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    23386 1jgz:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    23387 1jgz:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    23388 1jgz:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    23389 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    23390 1jgz:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    23391 1jgz:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    23392 1jgz:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    23393 1jgz:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    23394 1jgz:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    23395 1jh0:L (3.5) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    23396 1jh0:L (3.5) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    23397 1jh0:L (3.5) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    23398 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    23399 1jh0:L (3.5) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    23400 1jh0:L (3.5) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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