Zhanglab forum

Hi Zhang Lab Team, I notice that the result of SPRING has a SPRING score, which evaluates models constructed from monomer-to-oligomer mappings. In the article of SPRING (PMCID: PMC4076494), SPRING score is represented as SPRING-score = min(ZA, ZB) + w1 TM + w2 contact And the results of off-line ...

It seems that FASPR is not used to deal with C-alpha traces, as it is mentioned in FASPR page: (1) there should be no missing N, CA, C and O atoms in the main chain But I have found the script to reconstruct full atom model in the download page of SPRING. The url: https://zhanglab.dcmb.med.umich.edu ...

Hello Zhang Lab Team,

I'm using SPRING to predict my PPIs, but I find that the outcome pdb file of SPRING only contains C-alpha.
Is that the result of SPRING by default? Is there any approach to get the structure with all the atoms of each residue?

Thanks for any information