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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 274 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8j5k:0 (2.93) BS01 ET4 N/A GO:0009765 ... N/A 38071196
    2 8j5k:0 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    3 8j5k:0 (2.93) BS03 CLA N/A GO:0009765 ... N/A 38071196
    4 8j5k:0 (2.93) BS04 CLA N/A GO:0009765 ... N/A 38071196
    5 8j5k:0 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    6 8j5k:0 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    7 8j5k:0 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    8 8j5k:0 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    9 8j5k:0 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    10 8j5k:0 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    11 8j5k:0 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    12 8j5k:1 (2.93) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    13 8j5k:1 (2.93) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    14 8j5k:1 (2.93) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    15 8j5k:1 (2.93) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    16 8j5k:1 (2.93) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    17 8j5k:1 (2.93) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    18 8j5k:1 (2.93) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    19 8j5k:1 (2.93) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    20 8j5k:1 (2.93) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    21 8j5k:1 (2.93) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    22 8j5k:1 (2.93) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    23 8j5k:1 (2.93) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    24 8j5k:1 (2.93) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    25 8j5k:1 (2.93) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    26 8j5k:1 (2.93) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    27 8j5k:1 (2.93) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    28 8j5k:1 (2.93) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    29 8j5k:2 (2.93) BS01 A86 N/A GO:0009765 ... N/A 38071196
    30 8j5k:2 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    31 8j5k:2 (2.93) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    32 8j5k:2 (2.93) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    33 8j5k:2 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    34 8j5k:2 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    35 8j5k:2 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    36 8j5k:2 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    37 8j5k:2 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    38 8j5k:2 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    39 8j5k:2 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    40 8j5k:2 (2.93) BS12 CLA N/A GO:0009765 ... N/A 38071196
    41 8j5k:2 (2.93) BS13 CLA N/A GO:0009765 ... N/A 38071196
    42 8j5k:2 (2.93) BS14 CLA N/A GO:0009765 ... N/A 38071196
    43 8j5k:2 (2.93) BS15 CLA N/A GO:0009765 ... N/A 38071196
    44 8j5k:2 (2.93) BS16 CLA N/A GO:0009765 ... N/A 38071196
    45 8j5k:2 (2.93) BS17 CLA N/A GO:0009765 ... N/A 38071196
    46 8j5k:2 (2.93) BS18 CLA N/A GO:0009765 ... N/A 38071196
    47 8j5k:3 (2.93) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    48 8j5k:3 (2.93) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    49 8j5k:3 (2.93) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    50 8j5k:3 (2.93) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    51 8j5k:3 (2.93) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    52 8j5k:3 (2.93) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    53 8j5k:3 (2.93) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    54 8j5k:3 (2.93) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    55 8j5k:3 (2.93) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    56 8j5k:3 (2.93) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    57 8j5k:3 (2.93) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    58 8j5k:4 (2.93) BS01 A86 N/A N/A N/A 38071196
    59 8j5k:4 (2.93) BS02 A86 N/A N/A N/A 38071196
    60 8j5k:4 (2.93) BS03 CLA N/A N/A N/A 38071196
    61 8j5k:4 (2.93) BS04 CLA N/A N/A N/A 38071196
    62 8j5k:4 (2.93) BS05 CLA N/A N/A N/A 38071196
    63 8j5k:4 (2.93) BS06 CLA N/A N/A N/A 38071196
    64 8j5k:4 (2.93) BS07 CLA N/A N/A N/A 38071196
    65 8j5k:4 (2.93) BS08 CLA N/A N/A N/A 38071196
    66 8j5k:4 (2.93) BS09 CLA N/A N/A N/A 38071196
    67 8j5k:5 (2.93) BS01 ET4 N/A GO:0009765 ... N/A 38071196
    68 8j5k:5 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    69 8j5k:5 (2.93) BS03 CLA N/A GO:0009765 ... N/A 38071196
    70 8j5k:5 (2.93) BS04 CLA N/A GO:0009765 ... N/A 38071196
    71 8j5k:5 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    72 8j5k:5 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    73 8j5k:5 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    74 8j5k:5 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    75 8j5k:5 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    76 8j5k:5 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    77 8j5k:5 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    78 8j5k:6 (2.93) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    79 8j5k:6 (2.93) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    80 8j5k:6 (2.93) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    81 8j5k:6 (2.93) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    82 8j5k:6 (2.93) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    83 8j5k:6 (2.93) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    84 8j5k:6 (2.93) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    85 8j5k:6 (2.93) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    86 8j5k:6 (2.93) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    87 8j5k:6 (2.93) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    88 8j5k:6 (2.93) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    89 8j5k:6 (2.93) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    90 8j5k:6 (2.93) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    91 8j5k:6 (2.93) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    92 8j5k:6 (2.93) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    93 8j5k:6 (2.93) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    94 8j5k:6 (2.93) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    95 8j5k:7 (2.93) BS01 A86 N/A GO:0009765 ... N/A 38071196
    96 8j5k:7 (2.93) BS02 A86 N/A GO:0009765 ... N/A 38071196
    97 8j5k:7 (2.93) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    98 8j5k:7 (2.93) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    99 8j5k:7 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    100 8j5k:7 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    101 8j5k:7 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    102 8j5k:7 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    103 8j5k:7 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    104 8j5k:7 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    105 8j5k:7 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    106 8j5k:7 (2.93) BS12 CLA N/A GO:0009765 ... N/A 38071196
    107 8j5k:7 (2.93) BS13 CLA N/A GO:0009765 ... N/A 38071196
    108 8j5k:7 (2.93) BS14 CLA N/A GO:0009765 ... N/A 38071196
    109 8j5k:7 (2.93) BS15 CLA N/A GO:0009765 ... N/A 38071196
    110 8j5k:7 (2.93) BS16 CLA N/A GO:0009765 ... N/A 38071196
    111 8j5k:7 (2.93) BS17 CLA N/A GO:0009765 ... N/A 38071196
    112 8j5k:7 (2.93) BS18 CLA N/A GO:0009765 ... N/A 38071196
    113 8j5k:8 (2.93) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    114 8j5k:8 (2.93) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    115 8j5k:8 (2.93) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    116 8j5k:8 (2.93) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    117 8j5k:8 (2.93) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    118 8j5k:8 (2.93) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    119 8j5k:8 (2.93) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    120 8j5k:8 (2.93) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    121 8j5k:8 (2.93) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    122 8j5k:8 (2.93) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    123 8j5k:8 (2.93) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    124 8j5k:9 (2.93) BS01 A86 N/A N/A N/A 38071196
    125 8j5k:9 (2.93) BS02 A86 N/A N/A N/A 38071196
    126 8j5k:9 (2.93) BS03 CLA N/A N/A N/A 38071196
    127 8j5k:9 (2.93) BS04 CLA N/A N/A N/A 38071196
    128 8j5k:9 (2.93) BS05 CLA N/A N/A N/A 38071196
    129 8j5k:9 (2.93) BS06 CLA N/A N/A N/A 38071196
    130 8j5k:9 (2.93) BS07 CLA N/A N/A N/A 38071196
    131 8j5k:9 (2.93) BS08 CLA N/A N/A N/A 38071196
    132 8j5k:9 (2.93) BS09 CLA N/A N/A N/A 38071196
    133 8j5k:A (2.93) BS01 peptide 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    134 8j5k:A (2.93) BS02 OEX 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    135 8j5k:A (2.93) BS03 FE2 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    136 8j5k:A (2.93) BS04 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    137 8j5k:A (2.93) BS05 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    138 8j5k:A (2.93) BS06 PHO 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    139 8j5k:A (2.93) BS07 PHO 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    140 8j5k:A (2.93) BS08 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    141 8j5k:A (2.93) BS09 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    142 8j5k:B (2.93) BS01 CLA ? GO:0009507 ... A0A679C6E3 38071196
    143 8j5k:B (2.93) BS02 CLA ? GO:0009507 ... A0A679C6E3 38071196
    144 8j5k:B (2.93) BS03 CLA ? GO:0009507 ... A0A679C6E3 38071196
    145 8j5k:B (2.93) BS04 CLA ? GO:0009507 ... A0A679C6E3 38071196
    146 8j5k:B (2.93) BS05 CLA ? GO:0009507 ... A0A679C6E3 38071196
    147 8j5k:B (2.93) BS06 CLA ? GO:0009507 ... A0A679C6E3 38071196
    148 8j5k:B (2.93) BS07 CLA ? GO:0009507 ... A0A679C6E3 38071196
    149 8j5k:B (2.93) BS08 CLA ? GO:0009507 ... A0A679C6E3 38071196
    150 8j5k:B (2.93) BS09 CLA ? GO:0009507 ... A0A679C6E3 38071196
    151 8j5k:B (2.93) BS10 CLA ? GO:0009507 ... A0A679C6E3 38071196
    152 8j5k:B (2.93) BS11 CLA ? GO:0009507 ... A0A679C6E3 38071196
    153 8j5k:B (2.93) BS12 CLA ? GO:0009507 ... A0A679C6E3 38071196
    154 8j5k:B (2.93) BS13 CLA ? GO:0009507 ... A0A679C6E3 38071196
    155 8j5k:B (2.93) BS14 CLA ? GO:0009507 ... A0A679C6E3 38071196
    156 8j5k:B (2.93) BS15 CLA ? GO:0009507 ... A0A679C6E3 38071196
    157 8j5k:B (2.93) BS16 CLA ? GO:0009507 ... A0A679C6E3 38071196
    158 8j5k:C (2.93) BS01 OEX ? GO:0005737 ... A0A8F5GHI6 38071196
    159 8j5k:C (2.93) BS02 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    160 8j5k:C (2.93) BS03 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    161 8j5k:C (2.93) BS04 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    162 8j5k:C (2.93) BS05 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    163 8j5k:C (2.93) BS06 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    164 8j5k:C (2.93) BS07 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    165 8j5k:C (2.93) BS08 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    166 8j5k:C (2.93) BS09 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    167 8j5k:C (2.93) BS10 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    168 8j5k:C (2.93) BS11 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    169 8j5k:C (2.93) BS12 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    170 8j5k:C (2.93) BS13 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    171 8j5k:C (2.93) BS14 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    172 8j5k:D (2.93) BS01 FE2 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    173 8j5k:D (2.93) BS02 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    174 8j5k:D (2.93) BS03 PHO 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    175 8j5k:D (2.93) BS04 PHO 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    176 8j5k:D (2.93) BS05 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    177 8j5k:D (2.93) BS06 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    178 8j5k:D (2.93) BS07 BCT 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    179 8j5k:D (2.93) BS08 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    180 8j5k:D (2.93) BS09 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    181 8j5k:E (2.93) BS01 HEM ? GO:0009523 ... A0A679C209 38071196
    182 8j5k:F (2.93) BS01 HEM ? GO:0009523 ... A0T0U1 38071196
    183 8j5k:H (2.93) BS01 CLA ? GO:0009507 ... B7XBY7 38071196
    184 8j5k:H (2.93) BS02 CLA ? GO:0009507 ... B7XBY7 38071196
    185 8j5k:H (2.93) BS03 CLA ? GO:0009507 ... B7XBY7 38071196
    186 8j5k:H (2.93) BS04 CLA ? GO:0009507 ... B7XBY7 38071196
    187 8j5k:I (2.93) BS01 CLA ? GO:0009523 ... A0A679BVT8 38071196
    188 8j5k:K (2.93) BS01 CLA ? GO:0009523 ... A0A2H5N031 38071196
    189 8j5k:L (2.93) BS01 peptide ? GO:0005737 ... A0A151DYG7 38071196
    190 8j5k:M (2.93) BS01 peptide ? GO:0009523 ... A0A679C2A0 38071196
    191 8j5k:P (2.93) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    192 8j5k:P (2.93) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    193 8j5k:P (2.93) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    194 8j5k:P (2.93) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    195 8j5k:P (2.93) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    196 8j5k:P (2.93) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    197 8j5k:P (2.93) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    198 8j5k:P (2.93) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    199 8j5k:P (2.93) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    200 8j5k:P (2.93) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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