Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 125 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8irb:A (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    2 8irb:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    3 8irb:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    4 8irb:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    5 8irb:A (2.3) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    6 8irb:A (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    7 8irb:A (2.3) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    8 8irb:A (2.3) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    9 8irb:A (2.3) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    10 8irb:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    11 8irb:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    12 8irb:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    13 8irb:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    14 8irb:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    15 8irb:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    16 8irb:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    17 8irb:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    18 8irb:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    19 8irb:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    20 8irb:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    21 8irb:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    22 8irb:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    23 8irb:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    24 8irb:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    25 8irb:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    26 8irb:C (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    27 8irb:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    28 8irb:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    29 8irb:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    30 8irb:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    31 8irb:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    32 8irb:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    33 8irb:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    34 8irb:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    35 8irb:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    36 8irb:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    37 8irb:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    38 8irb:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    39 8irb:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    40 8irb:C (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    41 8irb:D (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    42 8irb:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43 8irb:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    44 8irb:D (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    45 8irb:D (2.3) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    46 8irb:D (2.3) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    47 8irb:D (2.3) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    48 8irb:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    49 8irb:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    50 8irb:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    51 8irb:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    52 8irb:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    53 8irb:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    54 8irb:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    55 8irb:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    56 8irb:J (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    57 8irb:K (2.3) BS01 peptide ? GO:0005737 ... P19054 38297122
    58 8irb:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    59 8irb:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    60 8irb:O (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    61 8irb:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    62 8irb:Z (2.3) BS01 peptide ? GO:0009523 ... D0VWR5 38297122
    63 8irb:a (2.3) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 38297122
    64 8irb:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    65 8irb:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    66 8irb:a (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    67 8irb:a (2.3) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    68 8irb:a (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    69 8irb:a (2.3) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    70 8irb:a (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    71 8irb:a (2.3) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    72 8irb:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    73 8irb:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    74 8irb:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    75 8irb:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    76 8irb:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    77 8irb:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    78 8irb:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    79 8irb:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    80 8irb:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    81 8irb:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    82 8irb:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    83 8irb:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    84 8irb:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    85 8irb:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    86 8irb:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    87 8irb:c (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    88 8irb:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    89 8irb:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    90 8irb:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    91 8irb:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    92 8irb:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    93 8irb:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    94 8irb:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    95 8irb:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    96 8irb:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    97 8irb:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    98 8irb:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    99 8irb:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    100 8irb:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    101 8irb:c (2.3) BS15 CA ? GO:0005737 ... D0VWR7 38297122
    102 8irb:c (2.3) BS16 CA ? GO:0005737 ... D0VWR7 38297122
    103 8irb:d (2.3) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    104 8irb:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    105 8irb:d (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    106 8irb:d (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    107 8irb:d (2.3) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    108 8irb:d (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    109 8irb:d (2.3) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    110 8irb:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    111 8irb:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    112 8irb:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    113 8irb:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    114 8irb:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    115 8irb:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    116 8irb:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    117 8irb:h (2.3) BS04 CLA ? GO:0009523 ... P19052 38297122
    118 8irb:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    119 8irb:j (2.3) BS01 MG ? GO:0009523 ... Q7DGD4 38297122
    120 8irb:k (2.3) BS01 peptide ? GO:0005737 ... P19054 38297122
    121 8irb:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    122 8irb:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    123 8irb:o (2.3) BS01 CA ? GO:0009523 ... D0VWR2 38297122
    124 8irb:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    125 8irb:z (2.3) BS01 peptide ? GO:0009523 ... D0VWR5 38297122

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218