Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 8f4d:A (2.15) BS01 OEY 1.10.3.9 GO:0005506 ... P0A444 37138085
    2 8f4d:A (2.15) BS02 OEX 1.10.3.9 GO:0005506 ... P0A444 37138085
    3 8f4d:A (2.15) BS03 FE2 1.10.3.9 GO:0005506 ... P0A444 37138085
    4 8f4d:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    5 8f4d:A (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    6 8f4d:A (2.15) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    7 8f4d:A (2.15) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    8 8f4d:A (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    9 8f4d:A (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 37138085
    10 8f4d:A (2.15) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    11 8f4d:A (2.15) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    12 8f4d:B (2.15) BS01 CLA ? GO:0009521 ... Q8DIQ1 37138085
    13 8f4d:B (2.15) BS02 CLA ? GO:0009521 ... Q8DIQ1 37138085
    14 8f4d:B (2.15) BS03 CLA ? GO:0009521 ... Q8DIQ1 37138085
    15 8f4d:B (2.15) BS04 CLA ? GO:0009521 ... Q8DIQ1 37138085
    16 8f4d:B (2.15) BS05 CLA ? GO:0009521 ... Q8DIQ1 37138085
    17 8f4d:B (2.15) BS06 CLA ? GO:0009521 ... Q8DIQ1 37138085
    18 8f4d:B (2.15) BS07 CLA ? GO:0009521 ... Q8DIQ1 37138085
    19 8f4d:B (2.15) BS08 CLA ? GO:0009521 ... Q8DIQ1 37138085
    20 8f4d:B (2.15) BS09 CLA ? GO:0009521 ... Q8DIQ1 37138085
    21 8f4d:B (2.15) BS10 CLA ? GO:0009521 ... Q8DIQ1 37138085
    22 8f4d:B (2.15) BS11 CLA ? GO:0009521 ... Q8DIQ1 37138085
    23 8f4d:B (2.15) BS12 CLA ? GO:0009521 ... Q8DIQ1 37138085
    24 8f4d:B (2.15) BS13 CLA ? GO:0009521 ... Q8DIQ1 37138085
    25 8f4d:B (2.15) BS14 CLA ? GO:0009521 ... Q8DIQ1 37138085
    26 8f4d:B (2.15) BS15 CLA ? GO:0009521 ... Q8DIQ1 37138085
    27 8f4d:B (2.15) BS16 CLA ? GO:0009521 ... Q8DIQ1 37138085
    28 8f4d:C (2.15) BS01 OEY ? GO:0005737 ... Q8DIF8 37138085
    29 8f4d:C (2.15) BS02 OEX ? GO:0005737 ... Q8DIF8 37138085
    30 8f4d:C (2.15) BS03 CLA ? GO:0005737 ... Q8DIF8 37138085
    31 8f4d:C (2.15) BS04 CLA ? GO:0005737 ... Q8DIF8 37138085
    32 8f4d:C (2.15) BS05 CLA ? GO:0005737 ... Q8DIF8 37138085
    33 8f4d:C (2.15) BS06 CLA ? GO:0005737 ... Q8DIF8 37138085
    34 8f4d:C (2.15) BS07 CLA ? GO:0005737 ... Q8DIF8 37138085
    35 8f4d:C (2.15) BS08 CLA ? GO:0005737 ... Q8DIF8 37138085
    36 8f4d:C (2.15) BS09 CLA ? GO:0005737 ... Q8DIF8 37138085
    37 8f4d:C (2.15) BS10 CLA ? GO:0005737 ... Q8DIF8 37138085
    38 8f4d:C (2.15) BS11 CLA ? GO:0005737 ... Q8DIF8 37138085
    39 8f4d:C (2.15) BS12 CLA ? GO:0005737 ... Q8DIF8 37138085
    40 8f4d:C (2.15) BS13 CLA ? GO:0005737 ... Q8DIF8 37138085
    41 8f4d:C (2.15) BS14 CLA ? GO:0005737 ... Q8DIF8 37138085
    42 8f4d:C (2.15) BS15 CLA ? GO:0005737 ... Q8DIF8 37138085
    43 8f4d:D (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    44 8f4d:D (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    45 8f4d:D (2.15) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    46 8f4d:D (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    47 8f4d:D (2.15) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    48 8f4d:D (2.15) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    49 8f4d:D (2.15) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    50 8f4d:D (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    51 8f4d:D (2.15) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    52 8f4d:E (2.15) BS01 HEM ? GO:0005506 ... Q8DIP0 37138085
    53 8f4d:F (2.15) BS01 HEM ? GO:0005506 ... Q8DIN9 37138085
    54 8f4d:H (2.15) BS01 CLA ? GO:0009523 ... Q8DJ43 37138085
    55 8f4d:H (2.15) BS02 CLA ? GO:0009523 ... Q8DJ43 37138085
    56 8f4d:H (2.15) BS03 CLA ? GO:0009523 ... Q8DJ43 37138085
    57 8f4d:H (2.15) BS04 CLA ? GO:0009523 ... Q8DJ43 37138085
    58 8f4d:H (2.15) BS05 CLA ? GO:0009523 ... Q8DJ43 37138085
    59 8f4d:I (2.15) BS01 CLA ? GO:0005737 ... Q8DJZ6 37138085
    60 8f4d:K (2.15) BS01 peptide ? GO:0005737 ... Q9F1K9 37138085
    61 8f4d:K (2.15) BS02 CLA ? GO:0005737 ... Q9F1K9 37138085
    62 8f4d:K (2.15) BS03 CLA ? GO:0005737 ... Q9F1K9 37138085
    63 8f4d:V (2.15) BS01 HEC ? GO:0005506 ... P0A386 37138085
    64 8f4d:X (2.15) BS01 CLA ? GO:0009523 ... Q9F1R6 37138085
    65 8f4d:Z (2.15) BS01 peptide ? GO:0009523 ... Q8DHJ2 37138085
    66 8f4d:a (2.15) BS01 OEY 1.10.3.9 GO:0005506 ... P0A444 37138085
    67 8f4d:a (2.15) BS02 OEX 1.10.3.9 GO:0005506 ... P0A444 37138085
    68 8f4d:a (2.15) BS03 FE2 1.10.3.9 GO:0005506 ... P0A444 37138085
    69 8f4d:a (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    70 8f4d:a (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    71 8f4d:a (2.15) BS06 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    72 8f4d:a (2.15) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    73 8f4d:a (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 37138085
    74 8f4d:a (2.15) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 37138085
    75 8f4d:a (2.15) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 37138085
    76 8f4d:b (2.15) BS01 CLA ? GO:0009521 ... Q8DIQ1 37138085
    77 8f4d:b (2.15) BS02 CLA ? GO:0009521 ... Q8DIQ1 37138085
    78 8f4d:b (2.15) BS03 CLA ? GO:0009521 ... Q8DIQ1 37138085
    79 8f4d:b (2.15) BS04 CLA ? GO:0009521 ... Q8DIQ1 37138085
    80 8f4d:b (2.15) BS05 CLA ? GO:0009521 ... Q8DIQ1 37138085
    81 8f4d:b (2.15) BS06 CLA ? GO:0009521 ... Q8DIQ1 37138085
    82 8f4d:b (2.15) BS07 CLA ? GO:0009521 ... Q8DIQ1 37138085
    83 8f4d:b (2.15) BS08 CLA ? GO:0009521 ... Q8DIQ1 37138085
    84 8f4d:b (2.15) BS09 CLA ? GO:0009521 ... Q8DIQ1 37138085
    85 8f4d:b (2.15) BS10 CLA ? GO:0009521 ... Q8DIQ1 37138085
    86 8f4d:b (2.15) BS11 CLA ? GO:0009521 ... Q8DIQ1 37138085
    87 8f4d:b (2.15) BS12 CLA ? GO:0009521 ... Q8DIQ1 37138085
    88 8f4d:b (2.15) BS13 CLA ? GO:0009521 ... Q8DIQ1 37138085
    89 8f4d:b (2.15) BS14 CLA ? GO:0009521 ... Q8DIQ1 37138085
    90 8f4d:b (2.15) BS15 CLA ? GO:0009521 ... Q8DIQ1 37138085
    91 8f4d:b (2.15) BS16 CLA ? GO:0009521 ... Q8DIQ1 37138085
    92 8f4d:c (2.15) BS01 OEY ? GO:0005737 ... Q8DIF8 37138085
    93 8f4d:c (2.15) BS02 OEX ? GO:0005737 ... Q8DIF8 37138085
    94 8f4d:c (2.15) BS03 CLA ? GO:0005737 ... Q8DIF8 37138085
    95 8f4d:c (2.15) BS04 CLA ? GO:0005737 ... Q8DIF8 37138085
    96 8f4d:c (2.15) BS05 CLA ? GO:0005737 ... Q8DIF8 37138085
    97 8f4d:c (2.15) BS06 CLA ? GO:0005737 ... Q8DIF8 37138085
    98 8f4d:c (2.15) BS07 CLA ? GO:0005737 ... Q8DIF8 37138085
    99 8f4d:c (2.15) BS08 CLA ? GO:0005737 ... Q8DIF8 37138085
    100 8f4d:c (2.15) BS09 CLA ? GO:0005737 ... Q8DIF8 37138085
    101 8f4d:c (2.15) BS10 CLA ? GO:0005737 ... Q8DIF8 37138085
    102 8f4d:c (2.15) BS11 CLA ? GO:0005737 ... Q8DIF8 37138085
    103 8f4d:c (2.15) BS12 CLA ? GO:0005737 ... Q8DIF8 37138085
    104 8f4d:c (2.15) BS13 CLA ? GO:0005737 ... Q8DIF8 37138085
    105 8f4d:c (2.15) BS14 CLA ? GO:0005737 ... Q8DIF8 37138085
    106 8f4d:c (2.15) BS15 CLA ? GO:0005737 ... Q8DIF8 37138085
    107 8f4d:d (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    108 8f4d:d (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    109 8f4d:d (2.15) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    110 8f4d:d (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    111 8f4d:d (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    112 8f4d:d (2.15) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    113 8f4d:d (2.15) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    114 8f4d:d (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    115 8f4d:d (2.15) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 37138085
    116 8f4d:e (2.15) BS01 HEM ? GO:0005506 ... Q8DIP0 37138085
    117 8f4d:f (2.15) BS01 HEM ? GO:0005506 ... Q8DIN9 37138085
    118 8f4d:h (2.15) BS01 CLA ? GO:0009523 ... Q8DJ43 37138085
    119 8f4d:h (2.15) BS02 CLA ? GO:0009523 ... Q8DJ43 37138085
    120 8f4d:i (2.15) BS01 CLA ? GO:0005737 ... Q8DJZ6 37138085
    121 8f4d:k (2.15) BS01 CLA ? GO:0005737 ... Q9F1K9 37138085
    122 8f4d:v (2.15) BS01 HEC ? GO:0005506 ... P0A386 37138085
    123 8f4d:x (2.15) BS01 CLA ? GO:0009523 ... Q9F1R6 37138085
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218