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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 599 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7pin:A (3.6) BS01 OEX 1.10.3.9 GO:0005506 ... D0FY08 36799903
    2 7pin:A (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    3 7pin:A (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    4 7pin:A (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    5 7pin:A (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    6 7pin:A (3.6) BS06 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    7 7pin:A (3.6) BS07 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    8 7pin:A (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    9 7pin:A (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    10 7pin:A (3.6) BS10 BCT 1.10.3.9 GO:0005506 ... D0FY08 36799903
    11 7pin:A1 (3.6) BS01 OEX 1.10.3.9 GO:0005506 ... D0FY08 36799903
    12 7pin:A1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    13 7pin:A1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    14 7pin:A1 (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    15 7pin:A1 (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    16 7pin:A1 (3.6) BS06 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    17 7pin:A1 (3.6) BS07 PHO 1.10.3.9 GO:0005506 ... D0FY08 36799903
    18 7pin:A1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    19 7pin:A1 (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    20 7pin:A1 (3.6) BS10 BCT 1.10.3.9 GO:0005506 ... D0FY08 36799903
    21 7pin:B (3.6) BS01 peptide ? GO:0009507 ... A0A1C8XRM6 36799903
    22 7pin:B (3.6) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    23 7pin:B (3.6) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    24 7pin:B (3.6) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    25 7pin:B (3.6) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    26 7pin:B (3.6) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    27 7pin:B (3.6) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    28 7pin:B (3.6) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    29 7pin:B (3.6) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30 7pin:B (3.6) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31 7pin:B (3.6) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    32 7pin:B (3.6) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    33 7pin:B (3.6) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    34 7pin:B (3.6) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    35 7pin:B (3.6) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    36 7pin:B (3.6) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    37 7pin:B (3.6) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    38 7pin:B (3.6) BS18 C7Z ? GO:0009507 ... A0A1C8XRM6 36799903
    39 7pin:B1 (3.6) BS01 peptide ? GO:0009507 ... A0A1C8XRM6 36799903
    40 7pin:B1 (3.6) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    41 7pin:B1 (3.6) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    42 7pin:B1 (3.6) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    43 7pin:B1 (3.6) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    44 7pin:B1 (3.6) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    45 7pin:B1 (3.6) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    46 7pin:B1 (3.6) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    47 7pin:B1 (3.6) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    48 7pin:B1 (3.6) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    49 7pin:B1 (3.6) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    50 7pin:B1 (3.6) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    51 7pin:B1 (3.6) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    52 7pin:B1 (3.6) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    53 7pin:B1 (3.6) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    54 7pin:B1 (3.6) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    55 7pin:B1 (3.6) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    56 7pin:B1 (3.6) BS18 C7Z ? GO:0009507 ... A0A1C8XRM6 36799903
    57 7pin:C (3.6) BS01 OEX ? GO:0005737 ... D0FXY3 36799903
    58 7pin:C (3.6) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    59 7pin:C (3.6) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    60 7pin:C (3.6) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    61 7pin:C (3.6) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    62 7pin:C (3.6) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    63 7pin:C (3.6) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    64 7pin:C (3.6) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    65 7pin:C (3.6) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    66 7pin:C (3.6) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    67 7pin:C (3.6) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    68 7pin:C (3.6) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    69 7pin:C (3.6) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    70 7pin:C (3.6) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    71 7pin:C (3.6) BS15 LMK ? GO:0005737 ... D0FXY3 36799903
    72 7pin:C1 (3.6) BS01 OEX ? GO:0005737 ... D0FXY3 36799903
    73 7pin:C1 (3.6) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    74 7pin:C1 (3.6) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    75 7pin:C1 (3.6) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    76 7pin:C1 (3.6) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    77 7pin:C1 (3.6) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    78 7pin:C1 (3.6) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    79 7pin:C1 (3.6) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    80 7pin:C1 (3.6) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    81 7pin:C1 (3.6) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    82 7pin:C1 (3.6) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    83 7pin:C1 (3.6) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    84 7pin:C1 (3.6) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    85 7pin:C1 (3.6) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    86 7pin:C1 (3.6) BS15 LMK ? GO:0005737 ... D0FXY3 36799903
    87 7pin:C1 (3.6) BS16 LPX ? GO:0005737 ... D0FXY3 36799903
    88 7pin:D (3.6) BS01 peptide 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    89 7pin:D (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    90 7pin:D (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    91 7pin:D (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    92 7pin:D (3.6) BS05 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    93 7pin:D (3.6) BS06 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    94 7pin:D (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    95 7pin:D (3.6) BS08 BCT 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    96 7pin:D (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    97 7pin:D (3.6) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    98 7pin:D1 (3.6) BS01 peptide 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    99 7pin:D1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    100 7pin:D1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    101 7pin:D1 (3.6) BS04 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    102 7pin:D1 (3.6) BS05 PHO 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    103 7pin:D1 (3.6) BS06 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    104 7pin:D1 (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    105 7pin:D1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    106 7pin:E (3.6) BS01 peptide ? GO:0005506 ... D0FY01 36799903
    107 7pin:E (3.6) BS02 HEM ? GO:0005506 ... D0FY01 36799903
    108 7pin:E1 (3.6) BS01 peptide ? GO:0005506 ... D0FY01 36799903
    109 7pin:E1 (3.6) BS02 HEM ? GO:0005506 ... D0FY01 36799903
    110 7pin:E1 (3.6) BS03 4RF ? GO:0005506 ... D0FY01 36799903
    111 7pin:F (3.6) BS01 HEM ? GO:0009523 ... A0A1C8XRP4 36799903
    112 7pin:F1 (3.6) BS01 HEM ? GO:0009523 ... A0A1C8XRP4 36799903
    113 7pin:G (3.6) BS01 CHL ? GO:0009765 ... A1XKU7 36799903
    114 7pin:G (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    115 7pin:G (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    116 7pin:G (3.6) BS04 CHL ? GO:0009765 ... A1XKU7 36799903
    117 7pin:G (3.6) BS05 CHL ? GO:0009765 ... A1XKU7 36799903
    118 7pin:G (3.6) BS06 CHL ? GO:0009765 ... A1XKU7 36799903
    119 7pin:G (3.6) BS07 CHL ? GO:0009765 ... A1XKU7 36799903
    120 7pin:G (3.6) BS08 CHL ? GO:0009765 ... A1XKU7 36799903
    121 7pin:G (3.6) BS09 CLA ? GO:0009765 ... A1XKU7 36799903
    122 7pin:G (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    123 7pin:G (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    124 7pin:G (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    125 7pin:G (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    126 7pin:G1 (3.6) BS01 CHL ? GO:0009765 ... A1XKU7 36799903
    127 7pin:G1 (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    128 7pin:G1 (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    129 7pin:G1 (3.6) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    130 7pin:G1 (3.6) BS05 CHL ? GO:0009765 ... A1XKU7 36799903
    131 7pin:G1 (3.6) BS06 CHL ? GO:0009765 ... A1XKU7 36799903
    132 7pin:G1 (3.6) BS07 CHL ? GO:0009765 ... A1XKU7 36799903
    133 7pin:G1 (3.6) BS08 CHL ? GO:0009765 ... A1XKU7 36799903
    134 7pin:G1 (3.6) BS09 CHL ? GO:0009765 ... A1XKU7 36799903
    135 7pin:G1 (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    136 7pin:G1 (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    137 7pin:G1 (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    138 7pin:G1 (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    139 7pin:G1 (3.6) BS14 CHL ? GO:0009765 ... A1XKU7 36799903
    140 7pin:G1 (3.6) BS15 CHL ? GO:0009765 ... A1XKU7 36799903
    141 7pin:H (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    142 7pin:H (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    143 7pin:H (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    144 7pin:H (3.6) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    145 7pin:H (3.6) BS05 RRX ? GO:0009523 ... A0A1C8XRP3 36799903
    146 7pin:H1 (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    147 7pin:H1 (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    148 7pin:H1 (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    149 7pin:H1 (3.6) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    150 7pin:H1 (3.6) BS05 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    151 7pin:H1 (3.6) BS06 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    152 7pin:H1 (3.6) BS07 RRX ? GO:0009523 ... A0A1C8XRP3 36799903
    153 7pin:I (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    154 7pin:I (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    155 7pin:I (3.6) BS03 4RF ? GO:0005737 ... D0FXX5 36799903
    156 7pin:I1 (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    157 7pin:I1 (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    158 7pin:I1 (3.6) BS03 4RF ? GO:0005737 ... D0FXX5 36799903
    159 7pin:I1 (3.6) BS04 ERG ? GO:0005737 ... D0FXX5 36799903
    160 7pin:J (3.6) BS01 4RF N/A GO:0009523 ... N/A 36799903
    161 7pin:J1 (3.6) BS01 4RF N/A GO:0009523 ... N/A 36799903
    162 7pin:K (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    163 7pin:K (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    164 7pin:K1 (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    165 7pin:K1 (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    166 7pin:K1 (3.6) BS03 4RF ? GO:0009523 ... D0FXX2 36799903
    167 7pin:L1 (3.6) BS01 CLA ? GO:0005737 ... D0FY19 36799903
    168 7pin:M (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    169 7pin:M1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    170 7pin:M1 (3.6) BS02 CLA N/A GO:0009523 ... N/A 36799903
    171 7pin:N (3.6) BS01 CHL N/A GO:0009765 ... N/A 36799903
    172 7pin:N (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    173 7pin:N (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    174 7pin:N (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    175 7pin:N (3.6) BS05 CHL N/A GO:0009765 ... N/A 36799903
    176 7pin:N (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    177 7pin:N (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    178 7pin:N (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    179 7pin:N (3.6) BS09 CHL N/A GO:0009765 ... N/A 36799903
    180 7pin:N (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    181 7pin:N (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    182 7pin:N (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    183 7pin:N (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    184 7pin:N (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    185 7pin:N (3.6) BS15 CHL N/A GO:0009765 ... N/A 36799903
    186 7pin:N1 (3.6) BS01 CHL N/A GO:0009765 ... N/A 36799903
    187 7pin:N1 (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    188 7pin:N1 (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    189 7pin:N1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    190 7pin:N1 (3.6) BS05 CHL N/A GO:0009765 ... N/A 36799903
    191 7pin:N1 (3.6) BS06 CHL N/A GO:0009765 ... N/A 36799903
    192 7pin:N1 (3.6) BS07 CHL N/A GO:0009765 ... N/A 36799903
    193 7pin:N1 (3.6) BS08 CHL N/A GO:0009765 ... N/A 36799903
    194 7pin:N1 (3.6) BS09 CHL N/A GO:0009765 ... N/A 36799903
    195 7pin:N1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    196 7pin:N1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    197 7pin:N1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    198 7pin:N1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    199 7pin:N1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    200 7pin:N1 (3.6) BS15 CHL N/A GO:0009765 ... N/A 36799903

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218