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BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7n8o:A (1.93) BS01 OEX 1.10.3.9 GO:0005506 ... P16033 34937700
    2 7n8o:A (1.93) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 34937700
    3 7n8o:A (1.93) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    4 7n8o:A (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    5 7n8o:A (1.93) BS05 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    6 7n8o:A (1.93) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    7 7n8o:A (1.93) BS07 BCT 1.10.3.9 GO:0005506 ... P16033 34937700
    8 7n8o:A (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    9 7n8o:A (1.93) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    10 7n8o:A (1.93) BS10 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    11 7n8o:B (1.93) BS01 CLA ? GO:0009521 ... P05429 34937700
    12 7n8o:B (1.93) BS02 CLA ? GO:0009521 ... P05429 34937700
    13 7n8o:B (1.93) BS03 CLA ? GO:0009521 ... P05429 34937700
    14 7n8o:B (1.93) BS04 CLA ? GO:0009521 ... P05429 34937700
    15 7n8o:B (1.93) BS05 CLA ? GO:0009521 ... P05429 34937700
    16 7n8o:B (1.93) BS06 CLA ? GO:0009521 ... P05429 34937700
    17 7n8o:B (1.93) BS07 CLA ? GO:0009521 ... P05429 34937700
    18 7n8o:B (1.93) BS08 CLA ? GO:0009521 ... P05429 34937700
    19 7n8o:B (1.93) BS09 CLA ? GO:0009521 ... P05429 34937700
    20 7n8o:B (1.93) BS10 CLA ? GO:0009521 ... P05429 34937700
    21 7n8o:B (1.93) BS11 CLA ? GO:0009521 ... P05429 34937700
    22 7n8o:B (1.93) BS12 CLA ? GO:0009521 ... P05429 34937700
    23 7n8o:B (1.93) BS13 CLA ? GO:0009521 ... P05429 34937700
    24 7n8o:B (1.93) BS14 CLA ? GO:0009521 ... P05429 34937700
    25 7n8o:B (1.93) BS15 CLA ? GO:0009521 ... P05429 34937700
    26 7n8o:B (1.93) BS16 CLA ? GO:0009521 ... P05429 34937700
    27 7n8o:C (1.93) BS01 OEX ? GO:0005737 ... P09193 34937700
    28 7n8o:C (1.93) BS02 CLA ? GO:0005737 ... P09193 34937700
    29 7n8o:C (1.93) BS03 CLA ? GO:0005737 ... P09193 34937700
    30 7n8o:C (1.93) BS04 CLA ? GO:0005737 ... P09193 34937700
    31 7n8o:C (1.93) BS05 CLA ? GO:0005737 ... P09193 34937700
    32 7n8o:C (1.93) BS06 CLA ? GO:0005737 ... P09193 34937700
    33 7n8o:C (1.93) BS07 CLA ? GO:0005737 ... P09193 34937700
    34 7n8o:C (1.93) BS08 CLA ? GO:0005737 ... P09193 34937700
    35 7n8o:C (1.93) BS09 CLA ? GO:0005737 ... P09193 34937700
    36 7n8o:C (1.93) BS10 CLA ? GO:0005737 ... P09193 34937700
    37 7n8o:C (1.93) BS11 CLA ? GO:0005737 ... P09193 34937700
    38 7n8o:C (1.93) BS12 CLA ? GO:0005737 ... P09193 34937700
    39 7n8o:C (1.93) BS13 CLA ? GO:0005737 ... P09193 34937700
    40 7n8o:C (1.93) BS14 CLA ? GO:0005737 ... P09193 34937700
    41 7n8o:D (1.93) BS01 FE2 1.10.3.9 GO:0005506 ... P09192 34937700
    42 7n8o:D (1.93) BS02 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    43 7n8o:D (1.93) BS03 BCT 1.10.3.9 GO:0005506 ... P09192 34937700
    44 7n8o:D (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    45 7n8o:D (1.93) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    46 7n8o:D (1.93) BS06 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    47 7n8o:D (1.93) BS07 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    48 7n8o:D (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    49 7n8o:E (1.93) BS01 HEM ? GO:0005506 ... P09190 34937700
    50 7n8o:F (1.93) BS01 HEM ? GO:0005506 ... P09191 34937700
    51 7n8o:H (1.93) BS01 CLA ? GO:0009523 ... P14835 34937700
    52 7n8o:H (1.93) BS02 CLA ? GO:0009523 ... P14835 34937700
    53 7n8o:H (1.93) BS03 CLA ? GO:0009523 ... P14835 34937700
    54 7n8o:H (1.93) BS04 RRX ? GO:0009523 ... P14835 34937700
    55 7n8o:I (1.93) BS01 CLA ? GO:0005737 ... Q54697 34937700
    56 7n8o:K (1.93) BS01 CLA ? GO:0005737 ... P15819 34937700
    57 7n8o:K (1.93) BS02 CLA ? GO:0005737 ... P15819 34937700
    58 7n8o:K (1.93) BS03 CA ? GO:0005737 ... P15819 34937700
    59 7n8o:U (1.93) BS01 CA ? GO:0009523 ... Q55332 34937700
    60 7n8o:V (1.93) BS01 HEM ? GO:0005506 ... Q55013 34937700
    61 7n8o:V (1.93) BS02 CA ? GO:0005506 ... Q55013 34937700
    62 7n8o:X (1.93) BS01 CLA ? GO:0009523 ... P72575 34937700
    63 7n8o:Z (1.93) BS01 CLA ? GO:0009523 ... P73528 34937700
    64 7n8o:a (1.93) BS01 OEX 1.10.3.9 GO:0005506 ... P16033 34937700
    65 7n8o:a (1.93) BS02 FE2 1.10.3.9 GO:0005506 ... P16033 34937700
    66 7n8o:a (1.93) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    67 7n8o:a (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    68 7n8o:a (1.93) BS05 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    69 7n8o:a (1.93) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    70 7n8o:a (1.93) BS07 BCT 1.10.3.9 GO:0005506 ... P16033 34937700
    71 7n8o:a (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    72 7n8o:a (1.93) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    73 7n8o:a (1.93) BS10 PHO 1.10.3.9 GO:0005506 ... P16033 34937700
    74 7n8o:b (1.93) BS01 CLA ? GO:0009521 ... P05429 34937700
    75 7n8o:b (1.93) BS02 CLA ? GO:0009521 ... P05429 34937700
    76 7n8o:b (1.93) BS03 CLA ? GO:0009521 ... P05429 34937700
    77 7n8o:b (1.93) BS04 CLA ? GO:0009521 ... P05429 34937700
    78 7n8o:b (1.93) BS05 CLA ? GO:0009521 ... P05429 34937700
    79 7n8o:b (1.93) BS06 CLA ? GO:0009521 ... P05429 34937700
    80 7n8o:b (1.93) BS07 CLA ? GO:0009521 ... P05429 34937700
    81 7n8o:b (1.93) BS08 CLA ? GO:0009521 ... P05429 34937700
    82 7n8o:b (1.93) BS09 CLA ? GO:0009521 ... P05429 34937700
    83 7n8o:b (1.93) BS10 CLA ? GO:0009521 ... P05429 34937700
    84 7n8o:b (1.93) BS11 CLA ? GO:0009521 ... P05429 34937700
    85 7n8o:b (1.93) BS12 CLA ? GO:0009521 ... P05429 34937700
    86 7n8o:b (1.93) BS13 CLA ? GO:0009521 ... P05429 34937700
    87 7n8o:b (1.93) BS14 CLA ? GO:0009521 ... P05429 34937700
    88 7n8o:b (1.93) BS15 CLA ? GO:0009521 ... P05429 34937700
    89 7n8o:b (1.93) BS16 CLA ? GO:0009521 ... P05429 34937700
    90 7n8o:c (1.93) BS01 OEX ? GO:0005737 ... P09193 34937700
    91 7n8o:c (1.93) BS02 CLA ? GO:0005737 ... P09193 34937700
    92 7n8o:c (1.93) BS03 CLA ? GO:0005737 ... P09193 34937700
    93 7n8o:c (1.93) BS04 CLA ? GO:0005737 ... P09193 34937700
    94 7n8o:c (1.93) BS05 CLA ? GO:0005737 ... P09193 34937700
    95 7n8o:c (1.93) BS06 CLA ? GO:0005737 ... P09193 34937700
    96 7n8o:c (1.93) BS07 CLA ? GO:0005737 ... P09193 34937700
    97 7n8o:c (1.93) BS08 CLA ? GO:0005737 ... P09193 34937700
    98 7n8o:c (1.93) BS09 CLA ? GO:0005737 ... P09193 34937700
    99 7n8o:c (1.93) BS10 CLA ? GO:0005737 ... P09193 34937700
    100 7n8o:c (1.93) BS11 CLA ? GO:0005737 ... P09193 34937700
    101 7n8o:c (1.93) BS12 CLA ? GO:0005737 ... P09193 34937700
    102 7n8o:c (1.93) BS13 CLA ? GO:0005737 ... P09193 34937700
    103 7n8o:c (1.93) BS14 CLA ? GO:0005737 ... P09193 34937700
    104 7n8o:d (1.93) BS01 FE2 1.10.3.9 GO:0005506 ... P09192 34937700
    105 7n8o:d (1.93) BS02 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    106 7n8o:d (1.93) BS03 BCT 1.10.3.9 GO:0005506 ... P09192 34937700
    107 7n8o:d (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    108 7n8o:d (1.93) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    109 7n8o:d (1.93) BS06 PHO 1.10.3.9 GO:0005506 ... P09192 34937700
    110 7n8o:d (1.93) BS07 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    111 7n8o:d (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    112 7n8o:e (1.93) BS01 HEM ? GO:0005506 ... P09190 34937700
    113 7n8o:f (1.93) BS01 HEM ? GO:0005506 ... P09191 34937700
    114 7n8o:h (1.93) BS01 CLA ? GO:0009523 ... P14835 34937700
    115 7n8o:h (1.93) BS02 CLA ? GO:0009523 ... P14835 34937700
    116 7n8o:h (1.93) BS03 CLA ? GO:0009523 ... P14835 34937700
    117 7n8o:h (1.93) BS04 RRX ? GO:0009523 ... P14835 34937700
    118 7n8o:i (1.93) BS01 CLA ? GO:0005737 ... Q54697 34937700
    119 7n8o:k (1.93) BS01 CLA ? GO:0005737 ... P15819 34937700
    120 7n8o:k (1.93) BS02 CLA ? GO:0005737 ... P15819 34937700
    121 7n8o:k (1.93) BS03 CA ? GO:0005737 ... P15819 34937700
    122 7n8o:u (1.93) BS01 CA ? GO:0009523 ... Q55332 34937700
    123 7n8o:v (1.93) BS01 HEM ? GO:0005506 ... Q55013 34937700
    124 7n8o:v (1.93) BS02 CA ? GO:0005506 ... Q55013 34937700
    125 7n8o:x (1.93) BS01 CLA ? GO:0009523 ... P72575 34937700
    126 7n8o:z (1.93) BS01 CLA ? GO:0009523 ... P73528 34937700
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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