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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7eda:A (2.78) BS01 peptide 1.10.3.9 GO:0005506 ... P51765 34216574
    2 7eda:A (2.78) BS02 OEX 1.10.3.9 GO:0005506 ... P51765 34216574
    3 7eda:A (2.78) BS03 FE2 1.10.3.9 GO:0005506 ... P51765 34216574
    4 7eda:A (2.78) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    5 7eda:A (2.78) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    6 7eda:A (2.78) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    7 7eda:A (2.78) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 34216574
    8 7eda:A (2.78) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 34216574
    9 7eda:A (2.78) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    10 7eda:A (2.78) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    11 7eda:A (2.78) BS11 BCT 1.10.3.9 GO:0005506 ... P51765 34216574
    12 7eda:A (2.78) BS12 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    13 7eda:B (2.78) BS01 CLA ? GO:0009521 ... D0VWR1 34216574
    14 7eda:B (2.78) BS02 CLA ? GO:0009521 ... D0VWR1 34216574
    15 7eda:B (2.78) BS03 CLA ? GO:0009521 ... D0VWR1 34216574
    16 7eda:B (2.78) BS04 CLA ? GO:0009521 ... D0VWR1 34216574
    17 7eda:B (2.78) BS05 CLA ? GO:0009521 ... D0VWR1 34216574
    18 7eda:B (2.78) BS06 CLA ? GO:0009521 ... D0VWR1 34216574
    19 7eda:B (2.78) BS07 CLA ? GO:0009521 ... D0VWR1 34216574
    20 7eda:B (2.78) BS08 CLA ? GO:0009521 ... D0VWR1 34216574
    21 7eda:B (2.78) BS09 CLA ? GO:0009521 ... D0VWR1 34216574
    22 7eda:B (2.78) BS10 CLA ? GO:0009521 ... D0VWR1 34216574
    23 7eda:B (2.78) BS11 CLA ? GO:0009521 ... D0VWR1 34216574
    24 7eda:B (2.78) BS12 CLA ? GO:0009521 ... D0VWR1 34216574
    25 7eda:B (2.78) BS13 CLA ? GO:0009521 ... D0VWR1 34216574
    26 7eda:B (2.78) BS14 CLA ? GO:0009521 ... D0VWR1 34216574
    27 7eda:B (2.78) BS15 CLA ? GO:0009521 ... D0VWR1 34216574
    28 7eda:B (2.78) BS16 CLA ? GO:0009521 ... D0VWR1 34216574
    29 7eda:C (2.78) BS01 OEX ? GO:0005737 ... D0VWR7 34216574
    30 7eda:C (2.78) BS02 CLA ? GO:0005737 ... D0VWR7 34216574
    31 7eda:C (2.78) BS03 CLA ? GO:0005737 ... D0VWR7 34216574
    32 7eda:C (2.78) BS04 CLA ? GO:0005737 ... D0VWR7 34216574
    33 7eda:C (2.78) BS05 CLA ? GO:0005737 ... D0VWR7 34216574
    34 7eda:C (2.78) BS06 CLA ? GO:0005737 ... D0VWR7 34216574
    35 7eda:C (2.78) BS07 CLA ? GO:0005737 ... D0VWR7 34216574
    36 7eda:C (2.78) BS08 CLA ? GO:0005737 ... D0VWR7 34216574
    37 7eda:C (2.78) BS09 CLA ? GO:0005737 ... D0VWR7 34216574
    38 7eda:C (2.78) BS10 CLA ? GO:0005737 ... D0VWR7 34216574
    39 7eda:C (2.78) BS11 CLA ? GO:0005737 ... D0VWR7 34216574
    40 7eda:C (2.78) BS12 CLA ? GO:0005737 ... D0VWR7 34216574
    41 7eda:C (2.78) BS13 CLA ? GO:0005737 ... D0VWR7 34216574
    42 7eda:C (2.78) BS14 CLA ? GO:0005737 ... D0VWR7 34216574
    43 7eda:D (2.78) BS01 peptide 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    44 7eda:D (2.78) BS02 FE2 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    45 7eda:D (2.78) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    46 7eda:D (2.78) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    47 7eda:D (2.78) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    48 7eda:D (2.78) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    49 7eda:D (2.78) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    50 7eda:D (2.78) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    51 7eda:D (2.78) BS09 BCT 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    52 7eda:D (2.78) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    53 7eda:D (2.78) BS11 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    54 7eda:E (2.78) BS01 HEM ? GO:0005506 ... P12238 34216574
    55 7eda:F (2.78) BS01 HEM ? GO:0005506 ... P12239 34216574
    56 7eda:H (2.78) BS01 CLA ? GO:0009523 ... P19052 34216574
    57 7eda:H (2.78) BS02 CLA ? GO:0009523 ... P19052 34216574
    58 7eda:H (2.78) BS03 CLA ? GO:0009523 ... P19052 34216574
    59 7eda:H (2.78) BS04 CLA ? GO:0009523 ... P19052 34216574
    60 7eda:H (2.78) BS05 RRX ? GO:0009523 ... P19052 34216574
    61 7eda:I (2.78) BS01 CLA ? GO:0005737 ... P12240 34216574
    62 7eda:I (2.78) BS02 CLA ? GO:0005737 ... P12240 34216574
    63 7eda:J (2.78) BS01 peptide ? GO:0009523 ... Q7DGD4 34216574
    64 7eda:K (2.78) BS01 peptide ? GO:0005737 ... P19054 34216574
    65 7eda:K (2.78) BS02 CLA ? GO:0005737 ... P19054 34216574
    66 7eda:K (2.78) BS03 CLA ? GO:0005737 ... P19054 34216574
    67 7eda:L (2.78) BS01 peptide ? GO:0005737 ... P12241 34216574
    68 7eda:V (2.78) BS01 HEC ? GO:0005506 ... P0A387 34216574
    69 7eda:X (2.78) BS01 RRX ? GO:0009523 ... D0VWR4 34216574
    70 7eda:Z (2.78) BS01 peptide ? GO:0009523 ... D0VWR5 34216574
    71 7eda:Z (2.78) BS02 CLA ? GO:0009523 ... D0VWR5 34216574
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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