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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 227 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yp7:A (3.8) BS01 OEX 1.10.3.9 GO:0005506 ... P06585 33207833
    2 6yp7:A (3.8) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 33207833
    3 6yp7:A (3.8) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    4 6yp7:A (3.8) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    5 6yp7:A (3.8) BS05 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    6 6yp7:A (3.8) BS06 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    7 6yp7:A (3.8) BS07 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    8 6yp7:A (3.8) BS08 BCT 1.10.3.9 GO:0005506 ... P06585 33207833
    9 6yp7:B (3.8) BS01 CLA ? GO:0009507 ... Q9XQR6 33207833
    10 6yp7:B (3.8) BS02 CLA ? GO:0009507 ... Q9XQR6 33207833
    11 6yp7:B (3.8) BS03 CLA ? GO:0009507 ... Q9XQR6 33207833
    12 6yp7:B (3.8) BS04 CLA ? GO:0009507 ... Q9XQR6 33207833
    13 6yp7:B (3.8) BS05 CLA ? GO:0009507 ... Q9XQR6 33207833
    14 6yp7:B (3.8) BS06 CLA ? GO:0009507 ... Q9XQR6 33207833
    15 6yp7:B (3.8) BS07 CLA ? GO:0009507 ... Q9XQR6 33207833
    16 6yp7:B (3.8) BS08 CLA ? GO:0009507 ... Q9XQR6 33207833
    17 6yp7:B (3.8) BS09 CLA ? GO:0009507 ... Q9XQR6 33207833
    18 6yp7:B (3.8) BS10 CLA ? GO:0009507 ... Q9XQR6 33207833
    19 6yp7:B (3.8) BS11 CLA ? GO:0009507 ... Q9XQR6 33207833
    20 6yp7:B (3.8) BS12 CLA ? GO:0009507 ... Q9XQR6 33207833
    21 6yp7:B (3.8) BS13 CLA ? GO:0009507 ... Q9XQR6 33207833
    22 6yp7:B (3.8) BS14 CLA ? GO:0009507 ... Q9XQR6 33207833
    23 6yp7:B (3.8) BS15 CLA ? GO:0009507 ... Q9XQR6 33207833
    24 6yp7:C (3.8) BS01 OEX ? GO:0005737 ... P06004 33207833
    25 6yp7:C (3.8) BS02 CLA ? GO:0005737 ... P06004 33207833
    26 6yp7:C (3.8) BS03 CLA ? GO:0005737 ... P06004 33207833
    27 6yp7:C (3.8) BS04 CLA ? GO:0005737 ... P06004 33207833
    28 6yp7:C (3.8) BS05 CLA ? GO:0005737 ... P06004 33207833
    29 6yp7:C (3.8) BS06 CLA ? GO:0005737 ... P06004 33207833
    30 6yp7:C (3.8) BS07 CLA ? GO:0005737 ... P06004 33207833
    31 6yp7:C (3.8) BS08 CLA ? GO:0005737 ... P06004 33207833
    32 6yp7:C (3.8) BS09 CLA ? GO:0005737 ... P06004 33207833
    33 6yp7:C (3.8) BS10 CLA ? GO:0005737 ... P06004 33207833
    34 6yp7:C (3.8) BS11 CLA ? GO:0005737 ... P06004 33207833
    35 6yp7:C (3.8) BS12 CLA ? GO:0005737 ... P06004 33207833
    36 6yp7:C (3.8) BS13 CLA ? GO:0005737 ... P06004 33207833
    37 6yp7:C (3.8) BS14 CLA ? GO:0005737 ... P06004 33207833
    38 6yp7:D (3.8) BS01 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    39 6yp7:D (3.8) BS02 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    40 6yp7:D (3.8) BS03 BCT 1.10.3.9 GO:0005506 ... P06006 33207833
    41 6yp7:D (3.8) BS04 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    42 6yp7:D (3.8) BS05 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    43 6yp7:E (3.8) BS01 HEM ? GO:0005506 ... P13554 33207833
    44 6yp7:F (3.8) BS01 HEM ? GO:0009523 ... P62096 33207833
    45 6yp7:G (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    46 6yp7:G (3.8) BS02 CLA ? GO:0009765 ... P27490 33207833
    47 6yp7:G (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    48 6yp7:G (3.8) BS04 CHL ? GO:0009765 ... P27490 33207833
    49 6yp7:G (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    50 6yp7:G (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    51 6yp7:G (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    52 6yp7:G (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    53 6yp7:G (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    54 6yp7:G (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    55 6yp7:G (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    56 6yp7:G (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    57 6yp7:G (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    58 6yp7:G (3.8) BS14 CHL ? GO:0009765 ... P27490 33207833
    59 6yp7:H (3.8) BS01 CLA ? GO:0009523 ... Q9XQR3 33207833
    60 6yp7:H (3.8) BS02 CLA ? GO:0009523 ... Q9XQR3 33207833
    61 6yp7:N (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    62 6yp7:N (3.8) BS02 CLA ? GO:0009765 ... P27490 33207833
    63 6yp7:N (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    64 6yp7:N (3.8) BS04 CHL ? GO:0009765 ... P27490 33207833
    65 6yp7:N (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    66 6yp7:N (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    67 6yp7:N (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    68 6yp7:N (3.8) BS08 CLA ? GO:0009765 ... P27490 33207833
    69 6yp7:N (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    70 6yp7:N (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    71 6yp7:N (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    72 6yp7:N (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    73 6yp7:N (3.8) BS13 CHL ? GO:0009765 ... P27490 33207833
    74 6yp7:R (3.8) BS01 CHL N/A GO:0009765 ... N/A 33207833
    75 6yp7:R (3.8) BS02 CLA N/A GO:0009765 ... N/A 33207833
    76 6yp7:R (3.8) BS03 CLA N/A GO:0009765 ... N/A 33207833
    77 6yp7:R (3.8) BS04 CLA N/A GO:0009765 ... N/A 33207833
    78 6yp7:R (3.8) BS05 CHL N/A GO:0009765 ... N/A 33207833
    79 6yp7:R (3.8) BS06 CHL N/A GO:0009765 ... N/A 33207833
    80 6yp7:R (3.8) BS07 CHL N/A GO:0009765 ... N/A 33207833
    81 6yp7:R (3.8) BS08 CLA N/A GO:0009765 ... N/A 33207833
    82 6yp7:R (3.8) BS09 CLA N/A GO:0009765 ... N/A 33207833
    83 6yp7:R (3.8) BS10 CLA N/A GO:0009765 ... N/A 33207833
    84 6yp7:R (3.8) BS11 CLA N/A GO:0009765 ... N/A 33207833
    85 6yp7:S (3.8) BS01 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    86 6yp7:S (3.8) BS02 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    87 6yp7:S (3.8) BS03 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    88 6yp7:S (3.8) BS04 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    89 6yp7:S (3.8) BS05 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    90 6yp7:S (3.8) BS06 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    91 6yp7:S (3.8) BS07 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    92 6yp7:S (3.8) BS08 CHL ? GO:0009765 ... A0A2D0TCJ1 33207833
    93 6yp7:S (3.8) BS09 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    94 6yp7:S (3.8) BS10 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    95 6yp7:S (3.8) BS11 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    96 6yp7:S (3.8) BS12 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    97 6yp7:S (3.8) BS13 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    98 6yp7:S (3.8) BS14 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    99 6yp7:W (3.8) BS01 CLA ? GO:0009507 ... A0A2D0TCJ2 33207833
    100 6yp7:Y (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    101 6yp7:Y (3.8) BS02 CHL ? GO:0009765 ... P27490 33207833
    102 6yp7:Y (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    103 6yp7:Y (3.8) BS04 CLA ? GO:0009765 ... P27490 33207833
    104 6yp7:Y (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    105 6yp7:Y (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    106 6yp7:Y (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    107 6yp7:Y (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    108 6yp7:Y (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    109 6yp7:Y (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    110 6yp7:Y (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    111 6yp7:Y (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    112 6yp7:Y (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    113 6yp7:Y (3.8) BS14 CHL ? GO:0009765 ... P27490 33207833
    114 6yp7:a (3.8) BS01 OEX 1.10.3.9 GO:0005506 ... P06585 33207833
    115 6yp7:a (3.8) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 33207833
    116 6yp7:a (3.8) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    117 6yp7:a (3.8) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    118 6yp7:a (3.8) BS05 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    119 6yp7:a (3.8) BS06 CLA 1.10.3.9 GO:0005506 ... P06585 33207833
    120 6yp7:a (3.8) BS07 BCT 1.10.3.9 GO:0005506 ... P06585 33207833
    121 6yp7:a (3.8) BS08 PHO 1.10.3.9 GO:0005506 ... P06585 33207833
    122 6yp7:b (3.8) BS01 CLA ? GO:0009507 ... Q9XQR6 33207833
    123 6yp7:b (3.8) BS02 CLA ? GO:0009507 ... Q9XQR6 33207833
    124 6yp7:b (3.8) BS03 CLA ? GO:0009507 ... Q9XQR6 33207833
    125 6yp7:b (3.8) BS04 CLA ? GO:0009507 ... Q9XQR6 33207833
    126 6yp7:b (3.8) BS05 CLA ? GO:0009507 ... Q9XQR6 33207833
    127 6yp7:b (3.8) BS06 CLA ? GO:0009507 ... Q9XQR6 33207833
    128 6yp7:b (3.8) BS07 CLA ? GO:0009507 ... Q9XQR6 33207833
    129 6yp7:b (3.8) BS08 CLA ? GO:0009507 ... Q9XQR6 33207833
    130 6yp7:b (3.8) BS09 CLA ? GO:0009507 ... Q9XQR6 33207833
    131 6yp7:b (3.8) BS10 CLA ? GO:0009507 ... Q9XQR6 33207833
    132 6yp7:b (3.8) BS11 CLA ? GO:0009507 ... Q9XQR6 33207833
    133 6yp7:b (3.8) BS12 CLA ? GO:0009507 ... Q9XQR6 33207833
    134 6yp7:b (3.8) BS13 CLA ? GO:0009507 ... Q9XQR6 33207833
    135 6yp7:b (3.8) BS14 CLA ? GO:0009507 ... Q9XQR6 33207833
    136 6yp7:b (3.8) BS15 CLA ? GO:0009507 ... Q9XQR6 33207833
    137 6yp7:c (3.8) BS01 OEX ? GO:0005737 ... P06004 33207833
    138 6yp7:c (3.8) BS02 CLA ? GO:0005737 ... P06004 33207833
    139 6yp7:c (3.8) BS03 CLA ? GO:0005737 ... P06004 33207833
    140 6yp7:c (3.8) BS04 CLA ? GO:0005737 ... P06004 33207833
    141 6yp7:c (3.8) BS05 CLA ? GO:0005737 ... P06004 33207833
    142 6yp7:c (3.8) BS06 CLA ? GO:0005737 ... P06004 33207833
    143 6yp7:c (3.8) BS07 CLA ? GO:0005737 ... P06004 33207833
    144 6yp7:c (3.8) BS08 CLA ? GO:0005737 ... P06004 33207833
    145 6yp7:c (3.8) BS09 CLA ? GO:0005737 ... P06004 33207833
    146 6yp7:c (3.8) BS10 CLA ? GO:0005737 ... P06004 33207833
    147 6yp7:c (3.8) BS11 CLA ? GO:0005737 ... P06004 33207833
    148 6yp7:c (3.8) BS12 CLA ? GO:0005737 ... P06004 33207833
    149 6yp7:c (3.8) BS13 CLA ? GO:0005737 ... P06004 33207833
    150 6yp7:c (3.8) BS14 CLA ? GO:0005737 ... P06004 33207833
    151 6yp7:d (3.8) BS01 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    152 6yp7:d (3.8) BS02 BCT 1.10.3.9 GO:0005506 ... P06006 33207833
    153 6yp7:d (3.8) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    154 6yp7:d (3.8) BS04 PHO 1.10.3.9 GO:0005506 ... P06006 33207833
    155 6yp7:d (3.8) BS05 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    156 6yp7:d (3.8) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 33207833
    157 6yp7:e (3.8) BS01 HEM ? GO:0005506 ... P13554 33207833
    158 6yp7:f (3.8) BS01 HEM ? GO:0009523 ... P62096 33207833
    159 6yp7:g (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    160 6yp7:g (3.8) BS02 CLA ? GO:0009765 ... P27490 33207833
    161 6yp7:g (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    162 6yp7:g (3.8) BS04 CHL ? GO:0009765 ... P27490 33207833
    163 6yp7:g (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    164 6yp7:g (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    165 6yp7:g (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    166 6yp7:g (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    167 6yp7:g (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    168 6yp7:g (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    169 6yp7:g (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    170 6yp7:g (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    171 6yp7:g (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    172 6yp7:h (3.8) BS01 CLA ? GO:0009523 ... Q9XQR3 33207833
    173 6yp7:h (3.8) BS02 CLA ? GO:0009523 ... Q9XQR3 33207833
    174 6yp7:i (3.8) BS01 CLA ? GO:0005737 ... D5MAJ9 33207833
    175 6yp7:n (3.8) BS01 CHL ? GO:0009765 ... P27490 33207833
    176 6yp7:n (3.8) BS02 CHL ? GO:0009765 ... P27490 33207833
    177 6yp7:n (3.8) BS03 CLA ? GO:0009765 ... P27490 33207833
    178 6yp7:n (3.8) BS04 CLA ? GO:0009765 ... P27490 33207833
    179 6yp7:n (3.8) BS05 CHL ? GO:0009765 ... P27490 33207833
    180 6yp7:n (3.8) BS06 CHL ? GO:0009765 ... P27490 33207833
    181 6yp7:n (3.8) BS07 CHL ? GO:0009765 ... P27490 33207833
    182 6yp7:n (3.8) BS08 CHL ? GO:0009765 ... P27490 33207833
    183 6yp7:n (3.8) BS09 CLA ? GO:0009765 ... P27490 33207833
    184 6yp7:n (3.8) BS10 CLA ? GO:0009765 ... P27490 33207833
    185 6yp7:n (3.8) BS11 CLA ? GO:0009765 ... P27490 33207833
    186 6yp7:n (3.8) BS12 CLA ? GO:0009765 ... P27490 33207833
    187 6yp7:n (3.8) BS13 CLA ? GO:0009765 ... P27490 33207833
    188 6yp7:n (3.8) BS14 CHL ? GO:0009765 ... P27490 33207833
    189 6yp7:r (3.8) BS01 CHL N/A GO:0009765 ... N/A 33207833
    190 6yp7:r (3.8) BS02 CLA N/A GO:0009765 ... N/A 33207833
    191 6yp7:r (3.8) BS03 CLA N/A GO:0009765 ... N/A 33207833
    192 6yp7:r (3.8) BS04 CLA N/A GO:0009765 ... N/A 33207833
    193 6yp7:r (3.8) BS05 CHL N/A GO:0009765 ... N/A 33207833
    194 6yp7:r (3.8) BS06 CHL N/A GO:0009765 ... N/A 33207833
    195 6yp7:r (3.8) BS07 CHL N/A GO:0009765 ... N/A 33207833
    196 6yp7:r (3.8) BS08 CLA N/A GO:0009765 ... N/A 33207833
    197 6yp7:r (3.8) BS09 CLA N/A GO:0009765 ... N/A 33207833
    198 6yp7:r (3.8) BS10 CLA N/A GO:0009765 ... N/A 33207833
    199 6yp7:r (3.8) BS11 CLA N/A GO:0009765 ... N/A 33207833
    200 6yp7:s (3.8) BS01 CLA ? GO:0009765 ... A0A2D0TCJ1 33207833
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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