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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tfd:A (2.25) BS01 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    2 6tfd:A (2.25) BS02 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    3 6tfd:A (2.25) BS03 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    4 6tfd:A (2.25) BS04 NO2 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    5 6tfd:A (2.25) BS05 NO2 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    6 6tfd:B (2.25) BS01 NO2 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    7 6tfd:B (2.25) BS02 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    8 6tfd:B (2.25) BS03 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    9 6tfd:B (2.25) BS04 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    10 6tfd:B (2.25) BS05 NO 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    11 6tfd:C (2.25) BS01 NO2 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    12 6tfd:C (2.25) BS02 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    13 6tfd:C (2.25) BS03 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    14 6tfd:C (2.25) BS04 CU 1.7.2.1 GO:0005507 ... N0B9M5 32431838
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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