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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 424 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kaf:1 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    2 6kaf:1 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    3 6kaf:1 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    4 6kaf:1 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    5 6kaf:1 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    6 6kaf:1 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    7 6kaf:1 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    8 6kaf:1 (3.73) BS08 CHL ? GO:0009416 ... Q93WL4 31570614
    9 6kaf:1 (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    10 6kaf:1 (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    11 6kaf:1 (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    12 6kaf:1 (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    13 6kaf:1 (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    14 6kaf:1 (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    15 6kaf:2 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    16 6kaf:2 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    17 6kaf:2 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    18 6kaf:2 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    19 6kaf:2 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    20 6kaf:2 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    21 6kaf:2 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    22 6kaf:2 (3.73) BS08 CHL ? GO:0009416 ... Q93WL4 31570614
    23 6kaf:2 (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    24 6kaf:2 (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    25 6kaf:2 (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    26 6kaf:2 (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    27 6kaf:2 (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    28 6kaf:2 (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    29 6kaf:2 (3.73) BS15 CHL ? GO:0009416 ... Q93WL4 31570614
    30 6kaf:3 (3.73) BS01 CHL ? GO:0009416 ... Q93WL4 31570614
    31 6kaf:3 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    32 6kaf:3 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    33 6kaf:3 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    34 6kaf:3 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    35 6kaf:3 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    36 6kaf:3 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    37 6kaf:3 (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    38 6kaf:3 (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    39 6kaf:3 (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    40 6kaf:3 (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    41 6kaf:3 (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    42 6kaf:3 (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    43 6kaf:3 (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    44 6kaf:4 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    45 6kaf:4 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    46 6kaf:4 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    47 6kaf:4 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    48 6kaf:4 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    49 6kaf:4 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    50 6kaf:4 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    51 6kaf:4 (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    52 6kaf:4 (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    53 6kaf:4 (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    54 6kaf:4 (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    55 6kaf:4 (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    56 6kaf:4 (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    57 6kaf:4 (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    58 6kaf:4 (3.73) BS15 CHL ? GO:0009416 ... Q93WL4 31570614
    59 6kaf:5 (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    60 6kaf:5 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    61 6kaf:5 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    62 6kaf:5 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    63 6kaf:5 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    64 6kaf:5 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    65 6kaf:5 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    66 6kaf:5 (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    67 6kaf:5 (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    68 6kaf:5 (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    69 6kaf:5 (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    70 6kaf:5 (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    71 6kaf:5 (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    72 6kaf:5 (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    73 6kaf:5 (3.73) BS15 CHL ? GO:0009416 ... Q93WL4 31570614
    74 6kaf:6 (3.73) BS01 CHL ? GO:0009416 ... Q93WL4 31570614
    75 6kaf:6 (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    76 6kaf:6 (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    77 6kaf:6 (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    78 6kaf:6 (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    79 6kaf:6 (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    80 6kaf:6 (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    81 6kaf:6 (3.73) BS08 CHL ? GO:0009416 ... Q93WL4 31570614
    82 6kaf:6 (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    83 6kaf:6 (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    84 6kaf:6 (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    85 6kaf:6 (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    86 6kaf:6 (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    87 6kaf:A (3.73) BS01 FE2 1.10.3.9 GO:0005506 ... P07753 31570614
    88 6kaf:A (3.73) BS02 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    89 6kaf:A (3.73) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    90 6kaf:A (3.73) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    91 6kaf:A (3.73) BS05 PHO 1.10.3.9 GO:0005506 ... P07753 31570614
    92 6kaf:A (3.73) BS06 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    93 6kaf:A (3.73) BS07 CLA 1.10.3.9 GO:0005506 ... P07753 31570614
    94 6kaf:A (3.73) BS08 PHO 1.10.3.9 GO:0005506 ... P07753 31570614
    95 6kaf:A (3.73) BS09 BCT 1.10.3.9 GO:0005506 ... P07753 31570614
    96 6kaf:B (3.73) BS01 CLA ? GO:0009507 ... P37255 31570614
    97 6kaf:B (3.73) BS02 CLA ? GO:0009507 ... P37255 31570614
    98 6kaf:B (3.73) BS03 CLA ? GO:0009507 ... P37255 31570614
    99 6kaf:B (3.73) BS04 CLA ? GO:0009507 ... P37255 31570614
    100 6kaf:B (3.73) BS05 CLA ? GO:0009507 ... P37255 31570614
    101 6kaf:B (3.73) BS06 CLA ? GO:0009507 ... P37255 31570614
    102 6kaf:B (3.73) BS07 CLA ? GO:0009507 ... P37255 31570614
    103 6kaf:B (3.73) BS08 CLA ? GO:0009507 ... P37255 31570614
    104 6kaf:B (3.73) BS09 CLA ? GO:0009507 ... P37255 31570614
    105 6kaf:B (3.73) BS10 CLA ? GO:0009507 ... P37255 31570614
    106 6kaf:B (3.73) BS11 CLA ? GO:0009507 ... P37255 31570614
    107 6kaf:B (3.73) BS12 CLA ? GO:0009507 ... P37255 31570614
    108 6kaf:B (3.73) BS13 CLA ? GO:0009507 ... P37255 31570614
    109 6kaf:B (3.73) BS14 CLA ? GO:0009507 ... P37255 31570614
    110 6kaf:B (3.73) BS15 CLA ? GO:0009507 ... P37255 31570614
    111 6kaf:B (3.73) BS16 CLA ? GO:0009507 ... P37255 31570614
    112 6kaf:C (3.73) BS01 CLA ? GO:0005737 ... P10898 31570614
    113 6kaf:C (3.73) BS02 CLA ? GO:0005737 ... P10898 31570614
    114 6kaf:C (3.73) BS03 CLA ? GO:0005737 ... P10898 31570614
    115 6kaf:C (3.73) BS04 CLA ? GO:0005737 ... P10898 31570614
    116 6kaf:C (3.73) BS05 CLA ? GO:0005737 ... P10898 31570614
    117 6kaf:C (3.73) BS06 CLA ? GO:0005737 ... P10898 31570614
    118 6kaf:C (3.73) BS07 CLA ? GO:0005737 ... P10898 31570614
    119 6kaf:C (3.73) BS08 CLA ? GO:0005737 ... P10898 31570614
    120 6kaf:C (3.73) BS09 CLA ? GO:0005737 ... P10898 31570614
    121 6kaf:C (3.73) BS10 CLA ? GO:0005737 ... P10898 31570614
    122 6kaf:C (3.73) BS11 CLA ? GO:0005737 ... P10898 31570614
    123 6kaf:C (3.73) BS12 CLA ? GO:0005737 ... P10898 31570614
    124 6kaf:C (3.73) BS13 CLA ? GO:0005737 ... P10898 31570614
    125 6kaf:D (3.73) BS01 CLA 1.10.3.9 GO:0005506 ... P06007 31570614
    126 6kaf:D (3.73) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 31570614
    127 6kaf:D (3.73) BS03 PHO 1.10.3.9 GO:0005506 ... P06007 31570614
    128 6kaf:D (3.73) BS04 CLA 1.10.3.9 GO:0005506 ... P06007 31570614
    129 6kaf:D (3.73) BS05 PHO 1.10.3.9 GO:0005506 ... P06007 31570614
    130 6kaf:D (3.73) BS06 BCT 1.10.3.9 GO:0005506 ... P06007 31570614
    131 6kaf:D (3.73) BS07 CLA 1.10.3.9 GO:0005506 ... P06007 31570614
    132 6kaf:D (3.73) BS08 CLA 1.10.3.9 GO:0005506 ... P06007 31570614
    133 6kaf:E (3.73) BS01 HEM ? GO:0005506 ... P48268 31570614
    134 6kaf:F (3.73) BS01 HEM ? GO:0005506 ... Q08363 31570614
    135 6kaf:G (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    136 6kaf:G (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    137 6kaf:G (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    138 6kaf:G (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    139 6kaf:G (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    140 6kaf:G (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    141 6kaf:G (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    142 6kaf:G (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    143 6kaf:G (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    144 6kaf:G (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    145 6kaf:G (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    146 6kaf:G (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    147 6kaf:G (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    148 6kaf:H (3.73) BS01 CLA ? GO:0009507 ... P22666 31570614
    149 6kaf:H (3.73) BS02 CLA ? GO:0009507 ... P22666 31570614
    150 6kaf:H (3.73) BS03 CLA ? GO:0009507 ... P22666 31570614
    151 6kaf:H (3.73) BS04 CLA ? GO:0009507 ... P22666 31570614
    152 6kaf:I (3.73) BS01 CLA ? GO:0005737 ... P59763 31570614
    153 6kaf:K (3.73) BS01 CLA ? GO:0005737 ... P18263 31570614
    154 6kaf:N (3.73) BS01 CHL ? GO:0009416 ... Q93WL4 31570614
    155 6kaf:N (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    156 6kaf:N (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    157 6kaf:N (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    158 6kaf:N (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    159 6kaf:N (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    160 6kaf:N (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    161 6kaf:N (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    162 6kaf:N (3.73) BS09 CLA ? GO:0009416 ... Q93WL4 31570614
    163 6kaf:N (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    164 6kaf:N (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    165 6kaf:N (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    166 6kaf:N (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    167 6kaf:N (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    168 6kaf:N (3.73) BS15 CHL ? GO:0009416 ... Q93WL4 31570614
    169 6kaf:P (3.73) BS01 CLA ? GO:0009416 ... Q93WL4 31570614
    170 6kaf:P (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    171 6kaf:P (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    172 6kaf:P (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    173 6kaf:P (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    174 6kaf:P (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    175 6kaf:P (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    176 6kaf:P (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    177 6kaf:P (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    178 6kaf:P (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    179 6kaf:P (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    180 6kaf:P (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    181 6kaf:P (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    182 6kaf:P (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    183 6kaf:P (3.73) BS15 CHL ? GO:0009416 ... Q93WL4 31570614
    184 6kaf:Q (3.73) BS01 CHL ? GO:0009416 ... Q93WL4 31570614
    185 6kaf:Q (3.73) BS02 CLA ? GO:0009416 ... Q93WL4 31570614
    186 6kaf:Q (3.73) BS03 CLA ? GO:0009416 ... Q93WL4 31570614
    187 6kaf:Q (3.73) BS04 CLA ? GO:0009416 ... Q93WL4 31570614
    188 6kaf:Q (3.73) BS05 CLA ? GO:0009416 ... Q93WL4 31570614
    189 6kaf:Q (3.73) BS06 CLA ? GO:0009416 ... Q93WL4 31570614
    190 6kaf:Q (3.73) BS07 CLA ? GO:0009416 ... Q93WL4 31570614
    191 6kaf:Q (3.73) BS08 CLA ? GO:0009416 ... Q93WL4 31570614
    192 6kaf:Q (3.73) BS09 CHL ? GO:0009416 ... Q93WL4 31570614
    193 6kaf:Q (3.73) BS10 CHL ? GO:0009416 ... Q93WL4 31570614
    194 6kaf:Q (3.73) BS11 CHL ? GO:0009416 ... Q93WL4 31570614
    195 6kaf:Q (3.73) BS12 CHL ? GO:0009416 ... Q93WL4 31570614
    196 6kaf:Q (3.73) BS13 CHL ? GO:0009416 ... Q93WL4 31570614
    197 6kaf:Q (3.73) BS14 CHL ? GO:0009416 ... Q93WL4 31570614
    198 6kaf:R (3.73) BS01 CHL ? GO:0009503 ... Q93WD2 31570614
    199 6kaf:R (3.73) BS02 CLA ? GO:0009503 ... Q93WD2 31570614
    200 6kaf:R (3.73) BS03 CLA ? GO:0009503 ... Q93WD2 31570614
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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