Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 138 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jll:A (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    2 6jll:A (2.15) BS02 BCT 1.10.3.9 GO:0005506 ... P51765 31624207
    3 6jll:A (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    4 6jll:A (2.15) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    5 6jll:A (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    6 6jll:A (2.15) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 31624207
    7 6jll:A (2.15) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 31624207
    8 6jll:A (2.15) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    9 6jll:A (2.15) BS09 OEX 1.10.3.9 GO:0005506 ... P51765 31624207
    10 6jll:A (2.15) BS10 OEY 1.10.3.9 GO:0005506 ... P51765 31624207
    11 6jll:A (2.15) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    12 6jll:B (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 31624207
    13 6jll:B (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 31624207
    14 6jll:B (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 31624207
    15 6jll:B (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 31624207
    16 6jll:B (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 31624207
    17 6jll:B (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 31624207
    18 6jll:B (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 31624207
    19 6jll:B (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 31624207
    20 6jll:B (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 31624207
    21 6jll:B (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 31624207
    22 6jll:B (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 31624207
    23 6jll:B (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 31624207
    24 6jll:B (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 31624207
    25 6jll:B (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 31624207
    26 6jll:B (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 31624207
    27 6jll:B (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 31624207
    28 6jll:C (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 31624207
    29 6jll:C (2.15) BS02 OEY ? GO:0005737 ... D0VWR7 31624207
    30 6jll:C (2.15) BS03 CLA ? GO:0005737 ... D0VWR7 31624207
    31 6jll:C (2.15) BS04 CLA ? GO:0005737 ... D0VWR7 31624207
    32 6jll:C (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 31624207
    33 6jll:C (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 31624207
    34 6jll:C (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 31624207
    35 6jll:C (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 31624207
    36 6jll:C (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 31624207
    37 6jll:C (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 31624207
    38 6jll:C (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 31624207
    39 6jll:C (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 31624207
    40 6jll:C (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 31624207
    41 6jll:C (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 31624207
    42 6jll:C (2.15) BS15 CLA ? GO:0005737 ... D0VWR7 31624207
    43 6jll:C (2.15) BS16 CA ? GO:0005737 ... D0VWR7 31624207
    44 6jll:D (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    45 6jll:D (2.15) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    46 6jll:D (2.15) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    47 6jll:D (2.15) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    48 6jll:D (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    49 6jll:D (2.15) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    50 6jll:D (2.15) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    51 6jll:D (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    52 6jll:D (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    53 6jll:E (2.15) BS01 HEM ? GO:0005506 ... P12238 31624207
    54 6jll:F (2.15) BS01 HEM ? GO:0005506 ... P12239 31624207
    55 6jll:H (2.15) BS01 CLA ? GO:0009523 ... P19052 31624207
    56 6jll:H (2.15) BS02 CLA ? GO:0009523 ... P19052 31624207
    57 6jll:H (2.15) BS03 CLA ? GO:0009523 ... P19052 31624207
    58 6jll:H (2.15) BS04 CLA ? GO:0009523 ... P19052 31624207
    59 6jll:I (2.15) BS01 CLA ? GO:0005737 ... P12240 31624207
    60 6jll:J (2.15) BS01 MG ? GO:0009523 ... Q7DGD4 31624207
    61 6jll:K (2.15) BS01 peptide ? GO:0005737 ... P19054 31624207
    62 6jll:K (2.15) BS02 CLA ? GO:0005737 ... P19054 31624207
    63 6jll:K (2.15) BS03 CLA ? GO:0005737 ... P19054 31624207
    64 6jll:O (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    65 6jll:V (2.15) BS01 HEM ? GO:0005506 ... P0A387 31624207
    66 6jll:Z (2.15) BS01 peptide ? GO:0009523 ... D0VWR5 31624207
    67 6jll:a (2.15) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 31624207
    68 6jll:a (2.15) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    69 6jll:a (2.15) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    70 6jll:a (2.15) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 31624207
    71 6jll:a (2.15) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    72 6jll:a (2.15) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 31624207
    73 6jll:a (2.15) BS07 OEY 1.10.3.9 GO:0005506 ... P51765 31624207
    74 6jll:a (2.15) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 31624207
    75 6jll:a (2.15) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 31624207
    76 6jll:a (2.15) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    77 6jll:a (2.15) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 31624207
    78 6jll:b (2.15) BS01 CLA ? GO:0009521 ... D0VWR1 31624207
    79 6jll:b (2.15) BS02 CLA ? GO:0009521 ... D0VWR1 31624207
    80 6jll:b (2.15) BS03 CLA ? GO:0009521 ... D0VWR1 31624207
    81 6jll:b (2.15) BS04 CLA ? GO:0009521 ... D0VWR1 31624207
    82 6jll:b (2.15) BS05 CLA ? GO:0009521 ... D0VWR1 31624207
    83 6jll:b (2.15) BS06 CLA ? GO:0009521 ... D0VWR1 31624207
    84 6jll:b (2.15) BS07 CLA ? GO:0009521 ... D0VWR1 31624207
    85 6jll:b (2.15) BS08 CLA ? GO:0009521 ... D0VWR1 31624207
    86 6jll:b (2.15) BS09 CLA ? GO:0009521 ... D0VWR1 31624207
    87 6jll:b (2.15) BS10 CLA ? GO:0009521 ... D0VWR1 31624207
    88 6jll:b (2.15) BS11 CLA ? GO:0009521 ... D0VWR1 31624207
    89 6jll:b (2.15) BS12 CLA ? GO:0009521 ... D0VWR1 31624207
    90 6jll:b (2.15) BS13 CLA ? GO:0009521 ... D0VWR1 31624207
    91 6jll:b (2.15) BS14 CLA ? GO:0009521 ... D0VWR1 31624207
    92 6jll:b (2.15) BS15 CLA ? GO:0009521 ... D0VWR1 31624207
    93 6jll:b (2.15) BS16 CLA ? GO:0009521 ... D0VWR1 31624207
    94 6jll:c (2.15) BS01 OEX ? GO:0005737 ... D0VWR7 31624207
    95 6jll:c (2.15) BS02 OEY ? GO:0005737 ... D0VWR7 31624207
    96 6jll:c (2.15) BS03 CA ? GO:0005737 ... D0VWR7 31624207
    97 6jll:c (2.15) BS04 CA ? GO:0005737 ... D0VWR7 31624207
    98 6jll:c (2.15) BS05 CLA ? GO:0005737 ... D0VWR7 31624207
    99 6jll:c (2.15) BS06 CLA ? GO:0005737 ... D0VWR7 31624207
    100 6jll:c (2.15) BS07 CLA ? GO:0005737 ... D0VWR7 31624207
    101 6jll:c (2.15) BS08 CLA ? GO:0005737 ... D0VWR7 31624207
    102 6jll:c (2.15) BS09 CLA ? GO:0005737 ... D0VWR7 31624207
    103 6jll:c (2.15) BS10 CLA ? GO:0005737 ... D0VWR7 31624207
    104 6jll:c (2.15) BS11 CLA ? GO:0005737 ... D0VWR7 31624207
    105 6jll:c (2.15) BS12 CLA ? GO:0005737 ... D0VWR7 31624207
    106 6jll:c (2.15) BS13 CLA ? GO:0005737 ... D0VWR7 31624207
    107 6jll:c (2.15) BS14 CLA ? GO:0005737 ... D0VWR7 31624207
    108 6jll:c (2.15) BS15 CLA ? GO:0005737 ... D0VWR7 31624207
    109 6jll:c (2.15) BS16 CLA ? GO:0005737 ... D0VWR7 31624207
    110 6jll:c (2.15) BS17 CLA ? GO:0005737 ... D0VWR7 31624207
    111 6jll:d (2.15) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    112 6jll:d (2.15) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    113 6jll:d (2.15) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    114 6jll:d (2.15) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    115 6jll:d (2.15) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    116 6jll:d (2.15) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    117 6jll:d (2.15) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    118 6jll:d (2.15) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    119 6jll:d (2.15) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 31624207
    120 6jll:e (2.15) BS01 HEM ? GO:0005506 ... P12238 31624207
    121 6jll:f (2.15) BS01 HEM ? GO:0005506 ... P12239 31624207
    122 6jll:h (2.15) BS01 CLA ? GO:0009523 ... P19052 31624207
    123 6jll:h (2.15) BS02 CLA ? GO:0009523 ... P19052 31624207
    124 6jll:h (2.15) BS03 CLA ? GO:0009523 ... P19052 31624207
    125 6jll:h (2.15) BS04 CLA ? GO:0009523 ... P19052 31624207
    126 6jll:h (2.15) BS05 CLA ? GO:0009523 ... P19052 31624207
    127 6jll:i (2.15) BS01 CLA ? GO:0005737 ... P12240 31624207
    128 6jll:i (2.15) BS02 CLA ? GO:0005737 ... P12240 31624207
    129 6jll:j (2.15) BS01 peptide ? GO:0009523 ... Q7DGD4 31624207
    130 6jll:j (2.15) BS02 MG ? GO:0009523 ... Q7DGD4 31624207
    131 6jll:k (2.15) BS01 peptide ? GO:0005737 ... P19054 31624207
    132 6jll:k (2.15) BS02 CLA ? GO:0005737 ... P19054 31624207
    133 6jll:k (2.15) BS03 CLA ? GO:0005737 ... P19054 31624207
    134 6jll:o (2.15) BS01 CA ? GO:0009523 ... D0VWR2 31624207
    135 6jll:v (2.15) BS01 HEM ? GO:0005506 ... P0A387 31624207
    136 6jll:x (2.15) BS01 CLA ? GO:0009523 ... D0VWR4 31624207
    137 6jll:z (2.15) BS01 peptide ? GO:0009523 ... D0VWR5 31624207
    138 6jll:z (2.15) BS02 CLA ? GO:0009523 ... D0VWR5 31624207
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218