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BioLiP
Download all results in tab-seperated text for 135 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dhe:A (2.05) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 30405241
    2 6dhe:A (2.05) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    3 6dhe:A (2.05) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    4 6dhe:A (2.05) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    5 6dhe:A (2.05) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    6 6dhe:A (2.05) BS06 8CT 1.10.3.9 GO:0005506 ... P0A444 30405241
    7 6dhe:A (2.05) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    8 6dhe:A (2.05) BS08 OEX 1.10.3.9 GO:0005506 ... P0A444 30405241
    9 6dhe:A (2.05) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 30405241
    10 6dhe:A (2.05) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    11 6dhe:B (2.05) BS01 CLA ? GO:0009521 ... Q8DIQ1 30405241
    12 6dhe:B (2.05) BS02 CLA ? GO:0009521 ... Q8DIQ1 30405241
    13 6dhe:B (2.05) BS03 CLA ? GO:0009521 ... Q8DIQ1 30405241
    14 6dhe:B (2.05) BS04 CLA ? GO:0009521 ... Q8DIQ1 30405241
    15 6dhe:B (2.05) BS05 CLA ? GO:0009521 ... Q8DIQ1 30405241
    16 6dhe:B (2.05) BS06 CLA ? GO:0009521 ... Q8DIQ1 30405241
    17 6dhe:B (2.05) BS07 CLA ? GO:0009521 ... Q8DIQ1 30405241
    18 6dhe:B (2.05) BS08 CLA ? GO:0009521 ... Q8DIQ1 30405241
    19 6dhe:B (2.05) BS09 CLA ? GO:0009521 ... Q8DIQ1 30405241
    20 6dhe:B (2.05) BS10 CLA ? GO:0009521 ... Q8DIQ1 30405241
    21 6dhe:B (2.05) BS11 CLA ? GO:0009521 ... Q8DIQ1 30405241
    22 6dhe:B (2.05) BS12 CLA ? GO:0009521 ... Q8DIQ1 30405241
    23 6dhe:B (2.05) BS13 CLA ? GO:0009521 ... Q8DIQ1 30405241
    24 6dhe:B (2.05) BS14 CLA ? GO:0009521 ... Q8DIQ1 30405241
    25 6dhe:B (2.05) BS15 CLA ? GO:0009521 ... Q8DIQ1 30405241
    26 6dhe:B (2.05) BS16 CLA ? GO:0009521 ... Q8DIQ1 30405241
    27 6dhe:B (2.05) BS17 8CT ? GO:0009521 ... Q8DIQ1 30405241
    28 6dhe:C (2.05) BS01 OEX ? GO:0005737 ... Q8DIF8 30405241
    29 6dhe:C (2.05) BS02 CLA ? GO:0005737 ... Q8DIF8 30405241
    30 6dhe:C (2.05) BS03 CLA ? GO:0005737 ... Q8DIF8 30405241
    31 6dhe:C (2.05) BS04 CLA ? GO:0005737 ... Q8DIF8 30405241
    32 6dhe:C (2.05) BS05 CLA ? GO:0005737 ... Q8DIF8 30405241
    33 6dhe:C (2.05) BS06 CLA ? GO:0005737 ... Q8DIF8 30405241
    34 6dhe:C (2.05) BS07 CLA ? GO:0005737 ... Q8DIF8 30405241
    35 6dhe:C (2.05) BS08 CLA ? GO:0005737 ... Q8DIF8 30405241
    36 6dhe:C (2.05) BS09 CLA ? GO:0005737 ... Q8DIF8 30405241
    37 6dhe:C (2.05) BS10 CLA ? GO:0005737 ... Q8DIF8 30405241
    38 6dhe:C (2.05) BS11 CLA ? GO:0005737 ... Q8DIF8 30405241
    39 6dhe:C (2.05) BS12 CLA ? GO:0005737 ... Q8DIF8 30405241
    40 6dhe:C (2.05) BS13 CLA ? GO:0005737 ... Q8DIF8 30405241
    41 6dhe:C (2.05) BS14 CLA ? GO:0005737 ... Q8DIF8 30405241
    42 6dhe:C (2.05) BS15 8CT ? GO:0005737 ... Q8DIF8 30405241
    43 6dhe:C (2.05) BS16 8CT ? GO:0005737 ... Q8DIF8 30405241
    44 6dhe:C (2.05) BS17 8CT ? GO:0005737 ... Q8DIF8 30405241
    45 6dhe:D (2.05) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    46 6dhe:D (2.05) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    47 6dhe:D (2.05) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    48 6dhe:D (2.05) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    49 6dhe:D (2.05) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    50 6dhe:D (2.05) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    51 6dhe:D (2.05) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    52 6dhe:D (2.05) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    53 6dhe:D (2.05) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    54 6dhe:D (2.05) BS10 8CT 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    55 6dhe:E (2.05) BS01 HEM ? GO:0005506 ... Q8DIP0 30405241
    56 6dhe:F (2.05) BS01 8CT ? GO:0009523 ... Q8DIN9 30405241
    57 6dhe:F (2.05) BS02 HEM ? GO:0009523 ... Q8DIN9 30405241
    58 6dhe:H (2.05) BS01 CLA ? GO:0009523 ... Q8DJ43 30405241
    59 6dhe:H (2.05) BS02 CLA ? GO:0009523 ... Q8DJ43 30405241
    60 6dhe:H (2.05) BS03 CLA ? GO:0009523 ... Q8DJ43 30405241
    61 6dhe:H (2.05) BS04 CLA ? GO:0009523 ... Q8DJ43 30405241
    62 6dhe:I (2.05) BS01 CLA ? GO:0005737 ... Q8DJZ6 30405241
    63 6dhe:I (2.05) BS02 8CT ? GO:0005737 ... Q8DJZ6 30405241
    64 6dhe:K (2.05) BS01 peptide ? GO:0009523 ... Q9F1K9 30405241
    65 6dhe:K (2.05) BS02 CLA ? GO:0009523 ... Q9F1K9 30405241
    66 6dhe:K (2.05) BS03 CLA ? GO:0009523 ... Q9F1K9 30405241
    67 6dhe:K (2.05) BS04 8CT ? GO:0009523 ... Q9F1K9 30405241
    68 6dhe:V (2.05) BS01 HEC ? GO:0005506 ... P0A386 30405241
    69 6dhe:X (2.05) BS01 CLA ? GO:0009523 ... Q9F1R6 30405241
    70 6dhe:Z (2.05) BS01 peptide ? GO:0009523 ... Q8DHJ2 30405241
    71 6dhe:Z (2.05) BS02 8CT ? GO:0009523 ... Q8DHJ2 30405241
    72 6dhe:a (2.05) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 30405241
    73 6dhe:a (2.05) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 30405241
    74 6dhe:a (2.05) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    75 6dhe:a (2.05) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    76 6dhe:a (2.05) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    77 6dhe:a (2.05) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    78 6dhe:a (2.05) BS07 OEX 1.10.3.9 GO:0005506 ... P0A444 30405241
    79 6dhe:a (2.05) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 30405241
    80 6dhe:a (2.05) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 30405241
    81 6dhe:b (2.05) BS01 CLA ? GO:0009521 ... Q8DIQ1 30405241
    82 6dhe:b (2.05) BS02 CLA ? GO:0009521 ... Q8DIQ1 30405241
    83 6dhe:b (2.05) BS03 CLA ? GO:0009521 ... Q8DIQ1 30405241
    84 6dhe:b (2.05) BS04 CLA ? GO:0009521 ... Q8DIQ1 30405241
    85 6dhe:b (2.05) BS05 CLA ? GO:0009521 ... Q8DIQ1 30405241
    86 6dhe:b (2.05) BS06 CLA ? GO:0009521 ... Q8DIQ1 30405241
    87 6dhe:b (2.05) BS07 CLA ? GO:0009521 ... Q8DIQ1 30405241
    88 6dhe:b (2.05) BS08 CLA ? GO:0009521 ... Q8DIQ1 30405241
    89 6dhe:b (2.05) BS09 CLA ? GO:0009521 ... Q8DIQ1 30405241
    90 6dhe:b (2.05) BS10 CLA ? GO:0009521 ... Q8DIQ1 30405241
    91 6dhe:b (2.05) BS11 CLA ? GO:0009521 ... Q8DIQ1 30405241
    92 6dhe:b (2.05) BS12 CLA ? GO:0009521 ... Q8DIQ1 30405241
    93 6dhe:b (2.05) BS13 CLA ? GO:0009521 ... Q8DIQ1 30405241
    94 6dhe:b (2.05) BS14 CLA ? GO:0009521 ... Q8DIQ1 30405241
    95 6dhe:b (2.05) BS15 CLA ? GO:0009521 ... Q8DIQ1 30405241
    96 6dhe:b (2.05) BS16 CLA ? GO:0009521 ... Q8DIQ1 30405241
    97 6dhe:c (2.05) BS01 OEX ? GO:0005737 ... Q8DIF8 30405241
    98 6dhe:c (2.05) BS02 CLA ? GO:0005737 ... Q8DIF8 30405241
    99 6dhe:c (2.05) BS03 CLA ? GO:0005737 ... Q8DIF8 30405241
    100 6dhe:c (2.05) BS04 CLA ? GO:0005737 ... Q8DIF8 30405241
    101 6dhe:c (2.05) BS05 CLA ? GO:0005737 ... Q8DIF8 30405241
    102 6dhe:c (2.05) BS06 CLA ? GO:0005737 ... Q8DIF8 30405241
    103 6dhe:c (2.05) BS07 CLA ? GO:0005737 ... Q8DIF8 30405241
    104 6dhe:c (2.05) BS08 CLA ? GO:0005737 ... Q8DIF8 30405241
    105 6dhe:c (2.05) BS09 CLA ? GO:0005737 ... Q8DIF8 30405241
    106 6dhe:c (2.05) BS10 CLA ? GO:0005737 ... Q8DIF8 30405241
    107 6dhe:c (2.05) BS11 CLA ? GO:0005737 ... Q8DIF8 30405241
    108 6dhe:c (2.05) BS12 CLA ? GO:0005737 ... Q8DIF8 30405241
    109 6dhe:c (2.05) BS13 CLA ? GO:0005737 ... Q8DIF8 30405241
    110 6dhe:c (2.05) BS14 CLA ? GO:0005737 ... Q8DIF8 30405241
    111 6dhe:c (2.05) BS15 8CT ? GO:0005737 ... Q8DIF8 30405241
    112 6dhe:d (2.05) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    113 6dhe:d (2.05) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    114 6dhe:d (2.05) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    115 6dhe:d (2.05) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    116 6dhe:d (2.05) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    117 6dhe:d (2.05) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    118 6dhe:d (2.05) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    119 6dhe:d (2.05) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    120 6dhe:d (2.05) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    121 6dhe:d (2.05) BS10 8CT 1.10.3.9 GO:0005506 ... Q8CM25 30405241
    122 6dhe:e (2.05) BS01 HEM ? GO:0005506 ... Q8DIP0 30405241
    123 6dhe:f (2.05) BS01 8CT ? GO:0009523 ... Q8DIN9 30405241
    124 6dhe:f (2.05) BS02 HEM ? GO:0009523 ... Q8DIN9 30405241
    125 6dhe:h (2.05) BS01 CLA ? GO:0009523 ... Q8DJ43 30405241
    126 6dhe:h (2.05) BS02 CLA ? GO:0009523 ... Q8DJ43 30405241
    127 6dhe:h (2.05) BS03 CLA ? GO:0009523 ... Q8DJ43 30405241
    128 6dhe:i (2.05) BS01 CLA ? GO:0005737 ... Q8DJZ6 30405241
    129 6dhe:k (2.05) BS01 CLA ? GO:0009523 ... Q9F1K9 30405241
    130 6dhe:k (2.05) BS02 8CT ? GO:0009523 ... Q9F1K9 30405241
    131 6dhe:t (2.05) BS01 8CT ? GO:0009523 ... Q8DIQ0 30405241
    132 6dhe:v (2.05) BS01 HEC ? GO:0005506 ... P0A386 30405241
    133 6dhe:y (2.05) BS01 8CT ? GO:0009523 ... Q8DJI1 30405241
    134 6dhe:z (2.05) BS01 8CT ? GO:0009523 ... Q8DHJ2 30405241
    135 6dhe:z (2.05) BS02 8CT ? GO:0009523 ... Q8DHJ2 30405241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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