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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o3k:A (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    2 5o3k:A (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    3 5o3k:A (2.1) BS03 O 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    4 5o3k:A (2.1) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    5 5o3k:B (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    6 5o3k:B (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    7 5o3k:B (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    8 5o3k:C (2.1) BS01 O 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    9 5o3k:C (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    10 5o3k:C (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    11 5o3k:C (2.1) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    12 5o3k:D (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    13 5o3k:D (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    14 5o3k:D (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    15 5o3k:D (2.1) BS04 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    16 5o3k:E (2.1) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    17 5o3k:E (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    18 5o3k:E (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    19 5o3k:E (2.1) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    20 5o3k:F (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    21 5o3k:F (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    22 5o3k:F (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    23 5o3k:G (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    24 5o3k:G (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    25 5o3k:G (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    26 5o3k:H (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    27 5o3k:H (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    28 5o3k:H (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    29 5o3k:I (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    30 5o3k:I (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    31 5o3k:I (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    32 5o3k:J (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    33 5o3k:J (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    34 5o3k:J (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    35 5o3k:K (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    36 5o3k:K (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    37 5o3k:K (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    38 5o3k:L (2.1) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    39 5o3k:L (2.1) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    40 5o3k:L (2.1) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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