Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 123 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5mx2:A (2.197) BS01 peptide 1.10.3.9 GO:0005506 ... P0A444 28718766
    2 5mx2:A (2.197) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    3 5mx2:A (2.197) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    4 5mx2:A (2.197) BS04 PHO 1.10.3.9 GO:0005506 ... P0A444 28718766
    5 5mx2:A (2.197) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    6 5mx2:A (2.197) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    7 5mx2:A (2.197) BS07 FE 1.10.3.9 GO:0005506 ... P0A444 28718766
    8 5mx2:A (2.197) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 28718766
    9 5mx2:A (2.197) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    10 5mx2:A (2.197) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 28718766
    11 5mx2:B (2.197) BS01 peptide ? GO:0009521 ... Q8DIQ1 28718766
    12 5mx2:B (2.197) BS02 CLA ? GO:0009521 ... Q8DIQ1 28718766
    13 5mx2:B (2.197) BS03 CLA ? GO:0009521 ... Q8DIQ1 28718766
    14 5mx2:B (2.197) BS04 CLA ? GO:0009521 ... Q8DIQ1 28718766
    15 5mx2:B (2.197) BS05 CLA ? GO:0009521 ... Q8DIQ1 28718766
    16 5mx2:B (2.197) BS06 CLA ? GO:0009521 ... Q8DIQ1 28718766
    17 5mx2:B (2.197) BS07 CLA ? GO:0009521 ... Q8DIQ1 28718766
    18 5mx2:B (2.197) BS08 CLA ? GO:0009521 ... Q8DIQ1 28718766
    19 5mx2:B (2.197) BS09 CLA ? GO:0009521 ... Q8DIQ1 28718766
    20 5mx2:B (2.197) BS10 CLA ? GO:0009521 ... Q8DIQ1 28718766
    21 5mx2:B (2.197) BS11 CLA ? GO:0009521 ... Q8DIQ1 28718766
    22 5mx2:B (2.197) BS12 CLA ? GO:0009521 ... Q8DIQ1 28718766
    23 5mx2:B (2.197) BS13 CLA ? GO:0009521 ... Q8DIQ1 28718766
    24 5mx2:B (2.197) BS14 CLA ? GO:0009521 ... Q8DIQ1 28718766
    25 5mx2:B (2.197) BS15 CLA ? GO:0009521 ... Q8DIQ1 28718766
    26 5mx2:B (2.197) BS16 CLA ? GO:0009521 ... Q8DIQ1 28718766
    27 5mx2:C (2.197) BS01 CLA ? GO:0005737 ... Q8DIF8 28718766
    28 5mx2:C (2.197) BS02 CLA ? GO:0005737 ... Q8DIF8 28718766
    29 5mx2:C (2.197) BS03 CLA ? GO:0005737 ... Q8DIF8 28718766
    30 5mx2:C (2.197) BS04 CLA ? GO:0005737 ... Q8DIF8 28718766
    31 5mx2:C (2.197) BS05 CLA ? GO:0005737 ... Q8DIF8 28718766
    32 5mx2:C (2.197) BS06 CLA ? GO:0005737 ... Q8DIF8 28718766
    33 5mx2:C (2.197) BS07 CLA ? GO:0005737 ... Q8DIF8 28718766
    34 5mx2:C (2.197) BS08 CLA ? GO:0005737 ... Q8DIF8 28718766
    35 5mx2:C (2.197) BS09 CLA ? GO:0005737 ... Q8DIF8 28718766
    36 5mx2:C (2.197) BS10 CLA ? GO:0005737 ... Q8DIF8 28718766
    37 5mx2:C (2.197) BS11 CLA ? GO:0005737 ... Q8DIF8 28718766
    38 5mx2:C (2.197) BS12 CLA ? GO:0005737 ... Q8DIF8 28718766
    39 5mx2:C (2.197) BS13 CLA ? GO:0005737 ... Q8DIF8 28718766
    40 5mx2:D (2.197) BS01 peptide 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    41 5mx2:D (2.197) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    42 5mx2:D (2.197) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    43 5mx2:D (2.197) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    44 5mx2:D (2.197) BS05 FE 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    45 5mx2:D (2.197) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    46 5mx2:D (2.197) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    47 5mx2:D (2.197) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    48 5mx2:D (2.197) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    49 5mx2:D (2.197) BS10 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    50 5mx2:E (2.197) BS01 HEM ? GO:0005506 ... Q8DIP0 28718766
    51 5mx2:F (2.197) BS01 HEM ? GO:0005506 ... Q8DIN9 28718766
    52 5mx2:H (2.197) BS01 CLA ? GO:0009523 ... Q8DJ43 28718766
    53 5mx2:H (2.197) BS02 CLA ? GO:0009523 ... Q8DJ43 28718766
    54 5mx2:H (2.197) BS03 CLA ? GO:0009523 ... Q8DJ43 28718766
    55 5mx2:I (2.197) BS01 CLA ? GO:0005737 ... Q8DJZ6 28718766
    56 5mx2:K (2.197) BS01 peptide ? GO:0005737 ... Q9F1K9 28718766
    57 5mx2:K (2.197) BS02 CLA ? GO:0005737 ... Q9F1K9 28718766
    58 5mx2:L (2.197) BS01 peptide ? GO:0005737 ... Q8DIN8 28718766
    59 5mx2:V (2.197) BS01 HEM ? GO:0005506 ... P0A386 28718766
    60 5mx2:Z (2.197) BS01 peptide ? GO:0009523 ... Q8DHJ2 28718766
    61 5mx2:a (2.197) BS01 peptide 1.10.3.9 GO:0005506 ... P0A444 28718766
    62 5mx2:a (2.197) BS02 FE 1.10.3.9 GO:0005506 ... P0A444 28718766
    63 5mx2:a (2.197) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    64 5mx2:a (2.197) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    65 5mx2:a (2.197) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 28718766
    66 5mx2:a (2.197) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    67 5mx2:a (2.197) BS07 BCT 1.10.3.9 GO:0005506 ... P0A444 28718766
    68 5mx2:a (2.197) BS08 PHO 1.10.3.9 GO:0005506 ... P0A444 28718766
    69 5mx2:a (2.197) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    70 5mx2:a (2.197) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 28718766
    71 5mx2:b (2.197) BS01 CLA ? GO:0009521 ... Q8DIQ1 28718766
    72 5mx2:b (2.197) BS02 CLA ? GO:0009521 ... Q8DIQ1 28718766
    73 5mx2:b (2.197) BS03 CLA ? GO:0009521 ... Q8DIQ1 28718766
    74 5mx2:b (2.197) BS04 CLA ? GO:0009521 ... Q8DIQ1 28718766
    75 5mx2:b (2.197) BS05 CLA ? GO:0009521 ... Q8DIQ1 28718766
    76 5mx2:b (2.197) BS06 CLA ? GO:0009521 ... Q8DIQ1 28718766
    77 5mx2:b (2.197) BS07 CLA ? GO:0009521 ... Q8DIQ1 28718766
    78 5mx2:b (2.197) BS08 CLA ? GO:0009521 ... Q8DIQ1 28718766
    79 5mx2:b (2.197) BS09 CLA ? GO:0009521 ... Q8DIQ1 28718766
    80 5mx2:b (2.197) BS10 CLA ? GO:0009521 ... Q8DIQ1 28718766
    81 5mx2:b (2.197) BS11 CLA ? GO:0009521 ... Q8DIQ1 28718766
    82 5mx2:b (2.197) BS12 CLA ? GO:0009521 ... Q8DIQ1 28718766
    83 5mx2:b (2.197) BS13 CLA ? GO:0009521 ... Q8DIQ1 28718766
    84 5mx2:b (2.197) BS14 CLA ? GO:0009521 ... Q8DIQ1 28718766
    85 5mx2:b (2.197) BS15 CLA ? GO:0009521 ... Q8DIQ1 28718766
    86 5mx2:c (2.197) BS01 CLA ? GO:0005737 ... Q8DIF8 28718766
    87 5mx2:c (2.197) BS02 CLA ? GO:0005737 ... Q8DIF8 28718766
    88 5mx2:c (2.197) BS03 CLA ? GO:0005737 ... Q8DIF8 28718766
    89 5mx2:c (2.197) BS04 CLA ? GO:0005737 ... Q8DIF8 28718766
    90 5mx2:c (2.197) BS05 CLA ? GO:0005737 ... Q8DIF8 28718766
    91 5mx2:c (2.197) BS06 CLA ? GO:0005737 ... Q8DIF8 28718766
    92 5mx2:c (2.197) BS07 CLA ? GO:0005737 ... Q8DIF8 28718766
    93 5mx2:c (2.197) BS08 CLA ? GO:0005737 ... Q8DIF8 28718766
    94 5mx2:c (2.197) BS09 CLA ? GO:0005737 ... Q8DIF8 28718766
    95 5mx2:c (2.197) BS10 CLA ? GO:0005737 ... Q8DIF8 28718766
    96 5mx2:c (2.197) BS11 CLA ? GO:0005737 ... Q8DIF8 28718766
    97 5mx2:c (2.197) BS12 CLA ? GO:0005737 ... Q8DIF8 28718766
    98 5mx2:c (2.197) BS13 CLA ? GO:0005737 ... Q8DIF8 28718766
    99 5mx2:d (2.197) BS01 peptide 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    100 5mx2:d (2.197) BS02 FE 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    101 5mx2:d (2.197) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    102 5mx2:d (2.197) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    103 5mx2:d (2.197) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    104 5mx2:d (2.197) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    105 5mx2:d (2.197) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    106 5mx2:d (2.197) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    107 5mx2:d (2.197) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    108 5mx2:d (2.197) BS10 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28718766
    109 5mx2:e (2.197) BS01 HEM ? GO:0005506 ... Q8DIP0 28718766
    110 5mx2:f (2.197) BS01 HEM ? GO:0005506 ... Q8DIN9 28718766
    111 5mx2:h (2.197) BS01 CLA ? GO:0009523 ... Q8DJ43 28718766
    112 5mx2:h (2.197) BS02 CLA ? GO:0009523 ... Q8DJ43 28718766
    113 5mx2:h (2.197) BS03 CLA ? GO:0009523 ... Q8DJ43 28718766
    114 5mx2:h (2.197) BS04 CLA ? GO:0009523 ... Q8DJ43 28718766
    115 5mx2:i (2.197) BS01 CLA ? GO:0005737 ... Q8DJZ6 28718766
    116 5mx2:k (2.197) BS01 peptide ? GO:0005737 ... Q9F1K9 28718766
    117 5mx2:k (2.197) BS02 CLA ? GO:0005737 ... Q9F1K9 28718766
    118 5mx2:l (2.197) BS01 peptide ? GO:0005737 ... Q8DIN8 28718766
    119 5mx2:m (2.197) BS01 peptide ? GO:0005737 ... Q8DHA7 28718766
    120 5mx2:v (2.197) BS01 HEM ? GO:0005506 ... P0A386 28718766
    121 5mx2:x (2.197) BS01 CLA ? GO:0009523 ... Q9F1R6 28718766
    122 5mx2:z (2.197) BS01 peptide ? GO:0009523 ... Q8DHJ2 28718766
    123 5mx2:z (2.197) BS02 CLA ? GO:0009523 ... Q8DHJ2 28718766
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218