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BioLiP
Download all results in tab-seperated text for 125 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gti:A (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    2 5gti:A (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    3 5gti:A (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    4 5gti:A (2.5) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    5 5gti:A (2.5) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6 5gti:A (2.5) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    7 5gti:A (2.5) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    8 5gti:A (2.5) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    9 5gti:A (2.5) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    10 5gti:B (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    11 5gti:B (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    12 5gti:B (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    13 5gti:B (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    14 5gti:B (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    15 5gti:B (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    16 5gti:B (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    17 5gti:B (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    18 5gti:B (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    19 5gti:B (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    20 5gti:B (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    21 5gti:B (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    22 5gti:B (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    23 5gti:B (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    24 5gti:B (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    25 5gti:B (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    26 5gti:C (2.5) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    27 5gti:C (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    28 5gti:C (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    29 5gti:C (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    30 5gti:C (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    31 5gti:C (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    32 5gti:C (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    33 5gti:C (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    34 5gti:C (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    35 5gti:C (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    36 5gti:C (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    37 5gti:C (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    38 5gti:C (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    39 5gti:C (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    40 5gti:C (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    41 5gti:D (2.5) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    42 5gti:D (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    43 5gti:D (2.5) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    44 5gti:D (2.5) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    45 5gti:D (2.5) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    46 5gti:D (2.5) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    47 5gti:D (2.5) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    48 5gti:D (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    49 5gti:D (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    50 5gti:E (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    51 5gti:F (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    52 5gti:H (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    53 5gti:H (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    54 5gti:H (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    55 5gti:H (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    56 5gti:I (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    57 5gti:J (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    58 5gti:K (2.5) BS01 peptide ? GO:0005737 ... P19054 28219079
    59 5gti:K (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    60 5gti:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    61 5gti:V (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    62 5gti:Z (2.5) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    63 5gti:a (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    64 5gti:a (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    65 5gti:a (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    66 5gti:a (2.5) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    67 5gti:a (2.5) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    68 5gti:a (2.5) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    69 5gti:a (2.5) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    70 5gti:a (2.5) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    71 5gti:a (2.5) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    72 5gti:b (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    73 5gti:b (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    74 5gti:b (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    75 5gti:b (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    76 5gti:b (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    77 5gti:b (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    78 5gti:b (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    79 5gti:b (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    80 5gti:b (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    81 5gti:b (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    82 5gti:b (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    83 5gti:b (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    84 5gti:b (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    85 5gti:b (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    86 5gti:b (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    87 5gti:b (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    88 5gti:c (2.5) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    89 5gti:c (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    90 5gti:c (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    91 5gti:c (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    92 5gti:c (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    93 5gti:c (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    94 5gti:c (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    95 5gti:c (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    96 5gti:c (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    97 5gti:c (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    98 5gti:c (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    99 5gti:c (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    100 5gti:c (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    101 5gti:c (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    102 5gti:c (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    103 5gti:c (2.5) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    104 5gti:d (2.5) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    105 5gti:d (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    106 5gti:d (2.5) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    107 5gti:d (2.5) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    108 5gti:d (2.5) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    109 5gti:d (2.5) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    110 5gti:d (2.5) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    111 5gti:d (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    112 5gti:d (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113 5gti:e (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    114 5gti:f (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    115 5gti:h (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    116 5gti:h (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    117 5gti:h (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    118 5gti:h (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    119 5gti:i (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    120 5gti:j (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    121 5gti:k (2.5) BS01 peptide ? GO:0005737 ... P19054 28219079
    122 5gti:k (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    123 5gti:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    124 5gti:v (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    125 5gti:z (2.5) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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