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BioLiP
Download all results in tab-seperated text for 129 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5gth:A (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    2 5gth:A (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    3 5gth:A (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    4 5gth:A (2.5) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5 5gth:A (2.5) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    6 5gth:A (2.5) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    7 5gth:A (2.5) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    8 5gth:A (2.5) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    9 5gth:A (2.5) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    10 5gth:B (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    11 5gth:B (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    12 5gth:B (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    13 5gth:B (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    14 5gth:B (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    15 5gth:B (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    16 5gth:B (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    17 5gth:B (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    18 5gth:B (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    19 5gth:B (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    20 5gth:B (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    21 5gth:B (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    22 5gth:B (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    23 5gth:B (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    24 5gth:B (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    25 5gth:B (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    26 5gth:C (2.5) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    27 5gth:C (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    28 5gth:C (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    29 5gth:C (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    30 5gth:C (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    31 5gth:C (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    32 5gth:C (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    33 5gth:C (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    34 5gth:C (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    35 5gth:C (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    36 5gth:C (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    37 5gth:C (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    38 5gth:C (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    39 5gth:C (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    40 5gth:C (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    41 5gth:D (2.5) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    42 5gth:D (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    43 5gth:D (2.5) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    44 5gth:D (2.5) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    45 5gth:D (2.5) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    46 5gth:D (2.5) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    47 5gth:D (2.5) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    48 5gth:D (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    49 5gth:D (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    50 5gth:E (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    51 5gth:F (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    52 5gth:H (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    53 5gth:H (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    54 5gth:H (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    55 5gth:H (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    56 5gth:I (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    57 5gth:J (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    58 5gth:K (2.5) BS01 peptide ? GO:0005737 ... P19054 28219079
    59 5gth:K (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    60 5gth:K (2.5) BS03 CLA ? GO:0005737 ... P19054 28219079
    61 5gth:O (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    62 5gth:V (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    63 5gth:Z (2.5) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    64 5gth:Z (2.5) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    65 5gth:a (2.5) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    66 5gth:a (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    67 5gth:a (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    68 5gth:a (2.5) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    69 5gth:a (2.5) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 28219079
    70 5gth:a (2.5) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    71 5gth:a (2.5) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 28219079
    72 5gth:a (2.5) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 28219079
    73 5gth:a (2.5) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    74 5gth:b (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    75 5gth:b (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    76 5gth:b (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    77 5gth:b (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    78 5gth:b (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    79 5gth:b (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    80 5gth:b (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    81 5gth:b (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    82 5gth:b (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    83 5gth:b (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    84 5gth:b (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    85 5gth:b (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    86 5gth:b (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    87 5gth:b (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    88 5gth:b (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    89 5gth:b (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    90 5gth:c (2.5) BS01 OEX ? GO:0005737 ... D0VWR7 28219079
    91 5gth:c (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    92 5gth:c (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    93 5gth:c (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    94 5gth:c (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    95 5gth:c (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    96 5gth:c (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    97 5gth:c (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    98 5gth:c (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    99 5gth:c (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    100 5gth:c (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    101 5gth:c (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    102 5gth:c (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    103 5gth:c (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    104 5gth:c (2.5) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    105 5gth:c (2.5) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    106 5gth:d (2.5) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    107 5gth:d (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    108 5gth:d (2.5) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    109 5gth:d (2.5) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    110 5gth:d (2.5) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    111 5gth:d (2.5) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    112 5gth:d (2.5) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113 5gth:d (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    114 5gth:d (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    115 5gth:e (2.5) BS01 HEM ? GO:0005506 ... P12238 28219079
    116 5gth:f (2.5) BS01 HEM ? GO:0005506 ... P12239 28219079
    117 5gth:h (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    118 5gth:h (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    119 5gth:h (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    120 5gth:h (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    121 5gth:i (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    122 5gth:j (2.5) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    123 5gth:k (2.5) BS01 peptide ? GO:0005737 ... P19054 28219079
    124 5gth:k (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    125 5gth:k (2.5) BS03 CLA ? GO:0005737 ... P19054 28219079
    126 5gth:o (2.5) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    127 5gth:v (2.5) BS01 HEC ? GO:0005506 ... P0A387 28219079
    128 5gth:z (2.5) BS01 peptide ? GO:0009523 ... D0VWR5 28219079
    129 5gth:z (2.5) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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