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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 138 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5e7c:A (4.5) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 26863980
    2 5e7c:A (4.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 26863980
    3 5e7c:A (4.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    4 5e7c:A (4.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    5 5e7c:A (4.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 26863980
    6 5e7c:A (4.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    7 5e7c:A (4.5) BS07 FE2 1.10.3.9 GO:0005506 ... P0A444 26863980
    8 5e7c:A (4.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    9 5e7c:A (4.5) BS09 PHO 1.10.3.9 GO:0005506 ... P0A444 26863980
    10 5e7c:A (4.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    11 5e7c:B (4.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 26863980
    12 5e7c:B (4.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 26863980
    13 5e7c:B (4.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 26863980
    14 5e7c:B (4.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 26863980
    15 5e7c:B (4.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 26863980
    16 5e7c:B (4.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 26863980
    17 5e7c:B (4.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 26863980
    18 5e7c:B (4.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 26863980
    19 5e7c:B (4.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 26863980
    20 5e7c:B (4.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 26863980
    21 5e7c:B (4.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 26863980
    22 5e7c:B (4.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 26863980
    23 5e7c:B (4.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 26863980
    24 5e7c:B (4.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 26863980
    25 5e7c:B (4.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 26863980
    26 5e7c:B (4.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 26863980
    27 5e7c:C (4.5) BS01 OEX ? GO:0005737 ... Q8DIF8 26863980
    28 5e7c:C (4.5) BS02 CLA ? GO:0005737 ... Q8DIF8 26863980
    29 5e7c:C (4.5) BS03 CLA ? GO:0005737 ... Q8DIF8 26863980
    30 5e7c:C (4.5) BS04 CLA ? GO:0005737 ... Q8DIF8 26863980
    31 5e7c:C (4.5) BS05 CLA ? GO:0005737 ... Q8DIF8 26863980
    32 5e7c:C (4.5) BS06 CLA ? GO:0005737 ... Q8DIF8 26863980
    33 5e7c:C (4.5) BS07 CLA ? GO:0005737 ... Q8DIF8 26863980
    34 5e7c:C (4.5) BS08 CLA ? GO:0005737 ... Q8DIF8 26863980
    35 5e7c:C (4.5) BS09 CLA ? GO:0005737 ... Q8DIF8 26863980
    36 5e7c:C (4.5) BS10 CLA ? GO:0005737 ... Q8DIF8 26863980
    37 5e7c:C (4.5) BS11 CLA ? GO:0005737 ... Q8DIF8 26863980
    38 5e7c:C (4.5) BS12 CLA ? GO:0005737 ... Q8DIF8 26863980
    39 5e7c:C (4.5) BS13 CLA ? GO:0005737 ... Q8DIF8 26863980
    40 5e7c:C (4.5) BS14 CLA ? GO:0005737 ... Q8DIF8 26863980
    41 5e7c:D (4.5) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    42 5e7c:D (4.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    43 5e7c:D (4.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    44 5e7c:D (4.5) BS04 FE2 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    45 5e7c:D (4.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    46 5e7c:D (4.5) BS06 PHO 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    47 5e7c:D (4.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    48 5e7c:D (4.5) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    49 5e7c:D (4.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    50 5e7c:E (4.5) BS01 HEM ? GO:0005506 ... Q8DIP0 26863980
    51 5e7c:F (4.5) BS01 HEM ? GO:0009523 ... Q8DIN9 26863980
    52 5e7c:H (4.5) BS01 CLA ? GO:0009523 ... Q8DJ43 26863980
    53 5e7c:H (4.5) BS02 CLA ? GO:0009523 ... Q8DJ43 26863980
    54 5e7c:H (4.5) BS03 CLA ? GO:0009523 ... Q8DJ43 26863980
    55 5e7c:H (4.5) BS04 CLA ? GO:0009523 ... Q8DJ43 26863980
    56 5e7c:H (4.5) BS05 CLA ? GO:0009523 ... Q8DJ43 26863980
    57 5e7c:H (4.5) BS06 CLA ? GO:0009523 ... Q8DJ43 26863980
    58 5e7c:I (4.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 26863980
    59 5e7c:I (4.5) BS02 CLA ? GO:0005737 ... Q8DJZ6 26863980
    60 5e7c:J (4.5) BS01 peptide ? GO:0009523 ... P59087 26863980
    61 5e7c:J (4.5) BS02 MG ? GO:0009523 ... P59087 26863980
    62 5e7c:K (4.5) BS01 peptide ? GO:0009523 ... Q9F1K9 26863980
    63 5e7c:K (4.5) BS02 CLA ? GO:0009523 ... Q9F1K9 26863980
    64 5e7c:K (4.5) BS03 CLA ? GO:0009523 ... Q9F1K9 26863980
    65 5e7c:O (4.5) BS01 CA ? GO:0009523 ... P0A431 26863980
    66 5e7c:V (4.5) BS01 HEM ? GO:0005506 ... P0A386 26863980
    67 5e7c:X (4.5) BS01 CLA ? GO:0009523 ... Q9F1R6 26863980
    68 5e7c:Z (4.5) BS01 peptide ? GO:0009523 ... Q8DHJ2 26863980
    69 5e7c:Z (4.5) BS02 CLA ? GO:0009523 ... Q8DHJ2 26863980
    70 5e7c:a (4.5) BS01 OEX 1.10.3.9 GO:0005506 ... P0A444 26863980
    71 5e7c:a (4.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 26863980
    72 5e7c:a (4.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    73 5e7c:a (4.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    74 5e7c:a (4.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 26863980
    75 5e7c:a (4.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    76 5e7c:a (4.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    77 5e7c:a (4.5) BS08 FE2 1.10.3.9 GO:0005506 ... P0A444 26863980
    78 5e7c:a (4.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 26863980
    79 5e7c:a (4.5) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 26863980
    80 5e7c:b (4.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 26863980
    81 5e7c:b (4.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 26863980
    82 5e7c:b (4.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 26863980
    83 5e7c:b (4.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 26863980
    84 5e7c:b (4.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 26863980
    85 5e7c:b (4.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 26863980
    86 5e7c:b (4.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 26863980
    87 5e7c:b (4.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 26863980
    88 5e7c:b (4.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 26863980
    89 5e7c:b (4.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 26863980
    90 5e7c:b (4.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 26863980
    91 5e7c:b (4.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 26863980
    92 5e7c:b (4.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 26863980
    93 5e7c:b (4.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 26863980
    94 5e7c:b (4.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 26863980
    95 5e7c:b (4.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 26863980
    96 5e7c:c (4.5) BS01 OEX ? GO:0005737 ... Q8DIF8 26863980
    97 5e7c:c (4.5) BS02 CLA ? GO:0005737 ... Q8DIF8 26863980
    98 5e7c:c (4.5) BS03 CLA ? GO:0005737 ... Q8DIF8 26863980
    99 5e7c:c (4.5) BS04 CLA ? GO:0005737 ... Q8DIF8 26863980
    100 5e7c:c (4.5) BS05 CLA ? GO:0005737 ... Q8DIF8 26863980
    101 5e7c:c (4.5) BS06 CLA ? GO:0005737 ... Q8DIF8 26863980
    102 5e7c:c (4.5) BS07 CLA ? GO:0005737 ... Q8DIF8 26863980
    103 5e7c:c (4.5) BS08 CLA ? GO:0005737 ... Q8DIF8 26863980
    104 5e7c:c (4.5) BS09 CLA ? GO:0005737 ... Q8DIF8 26863980
    105 5e7c:c (4.5) BS10 CLA ? GO:0005737 ... Q8DIF8 26863980
    106 5e7c:c (4.5) BS11 CLA ? GO:0005737 ... Q8DIF8 26863980
    107 5e7c:c (4.5) BS12 CLA ? GO:0005737 ... Q8DIF8 26863980
    108 5e7c:c (4.5) BS13 CLA ? GO:0005737 ... Q8DIF8 26863980
    109 5e7c:c (4.5) BS14 CLA ? GO:0005737 ... Q8DIF8 26863980
    110 5e7c:d (4.5) BS01 BCT 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    111 5e7c:d (4.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    112 5e7c:d (4.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    113 5e7c:d (4.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    114 5e7c:d (4.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    115 5e7c:d (4.5) BS06 FE2 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    116 5e7c:d (4.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    117 5e7c:d (4.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    118 5e7c:d (4.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    119 5e7c:d (4.5) BS10 CLA 1.10.3.9 GO:0005506 ... Q8CM25 26863980
    120 5e7c:e (4.5) BS01 HEM ? GO:0005506 ... Q8DIP0 26863980
    121 5e7c:f (4.5) BS01 HEM ? GO:0009523 ... Q8DIN9 26863980
    122 5e7c:h (4.5) BS01 CLA ? GO:0009523 ... Q8DJ43 26863980
    123 5e7c:h (4.5) BS02 CLA ? GO:0009523 ... Q8DJ43 26863980
    124 5e7c:h (4.5) BS03 CLA ? GO:0009523 ... Q8DJ43 26863980
    125 5e7c:h (4.5) BS04 CLA ? GO:0009523 ... Q8DJ43 26863980
    126 5e7c:h (4.5) BS05 CLA ? GO:0009523 ... Q8DJ43 26863980
    127 5e7c:h (4.5) BS06 CLA ? GO:0009523 ... Q8DJ43 26863980
    128 5e7c:i (4.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 26863980
    129 5e7c:i (4.5) BS02 CLA ? GO:0005737 ... Q8DJZ6 26863980
    130 5e7c:j (4.5) BS01 MG ? GO:0009523 ... P59087 26863980
    131 5e7c:k (4.5) BS01 peptide ? GO:0009523 ... Q9F1K9 26863980
    132 5e7c:k (4.5) BS02 CLA ? GO:0009523 ... Q9F1K9 26863980
    133 5e7c:k (4.5) BS03 CLA ? GO:0009523 ... Q9F1K9 26863980
    134 5e7c:o (4.5) BS01 CA ? GO:0009523 ... P0A431 26863980
    135 5e7c:v (4.5) BS01 HEM ? GO:0005506 ... P0A386 26863980
    136 5e7c:x (4.5) BS01 CLA ? GO:0009523 ... Q9F1R6 26863980
    137 5e7c:z (4.5) BS01 peptide ? GO:0009523 ... Q8DHJ2 26863980
    138 5e7c:z (4.5) BS02 CLA ? GO:0009523 ... Q8DHJ2 26863980
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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