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BioLiP
Download all results in tab-seperated text for 130 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v62:AA (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 19219048
    2 4v62:AA (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    3 4v62:AA (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    4 4v62:AA (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    5 4v62:AA (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    6 4v62:AA (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    7 4v62:AA (2.9) BS07 OEC 1.10.3.9 GO:0005506 ... P0A444 19219048
    8 4v62:AA (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    9 4v62:AA (2.9) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 19219048
    10 4v62:AA (2.9) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    11 4v62:AB (2.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 19219048
    12 4v62:AB (2.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 19219048
    13 4v62:AB (2.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 19219048
    14 4v62:AB (2.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 19219048
    15 4v62:AB (2.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 19219048
    16 4v62:AB (2.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 19219048
    17 4v62:AB (2.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 19219048
    18 4v62:AB (2.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 19219048
    19 4v62:AB (2.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 19219048
    20 4v62:AB (2.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 19219048
    21 4v62:AB (2.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 19219048
    22 4v62:AB (2.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 19219048
    23 4v62:AB (2.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 19219048
    24 4v62:AB (2.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 19219048
    25 4v62:AB (2.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 19219048
    26 4v62:AB (2.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 19219048
    27 4v62:AC (2.9) BS01 CLA ? GO:0005737 ... Q8DIF8 19219048
    28 4v62:AC (2.9) BS02 CLA ? GO:0005737 ... Q8DIF8 19219048
    29 4v62:AC (2.9) BS03 CLA ? GO:0005737 ... Q8DIF8 19219048
    30 4v62:AC (2.9) BS04 CLA ? GO:0005737 ... Q8DIF8 19219048
    31 4v62:AC (2.9) BS05 CLA ? GO:0005737 ... Q8DIF8 19219048
    32 4v62:AC (2.9) BS06 CLA ? GO:0005737 ... Q8DIF8 19219048
    33 4v62:AC (2.9) BS07 CLA ? GO:0005737 ... Q8DIF8 19219048
    34 4v62:AC (2.9) BS08 CLA ? GO:0005737 ... Q8DIF8 19219048
    35 4v62:AC (2.9) BS09 CLA ? GO:0005737 ... Q8DIF8 19219048
    36 4v62:AC (2.9) BS10 CLA ? GO:0005737 ... Q8DIF8 19219048
    37 4v62:AC (2.9) BS11 CLA ? GO:0005737 ... Q8DIF8 19219048
    38 4v62:AC (2.9) BS12 CLA ? GO:0005737 ... Q8DIF8 19219048
    39 4v62:AC (2.9) BS13 CLA ? GO:0005737 ... Q8DIF8 19219048
    40 4v62:AD (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    41 4v62:AD (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    42 4v62:AD (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    43 4v62:AD (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    44 4v62:AD (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    45 4v62:AD (2.9) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    46 4v62:AD (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    47 4v62:AD (2.9) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    48 4v62:AD (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    49 4v62:AE (2.9) BS01 peptide ? GO:0005506 ... Q8DIP0 19219048
    50 4v62:AE (2.9) BS02 HEM ? GO:0005506 ... Q8DIP0 19219048
    51 4v62:AF (2.9) BS01 HEM ? GO:0005506 ... Q8DIN9 19219048
    52 4v62:AH (2.9) BS01 CLA ? GO:0009523 ... Q8DJ43 19219048
    53 4v62:AH (2.9) BS02 CLA ? GO:0009523 ... Q8DJ43 19219048
    54 4v62:AH (2.9) BS03 CLA ? GO:0009523 ... Q8DJ43 19219048
    55 4v62:AH (2.9) BS04 CLA ? GO:0009523 ... Q8DJ43 19219048
    56 4v62:AI (2.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 19219048
    57 4v62:AK (2.9) BS01 peptide ? GO:0009523 ... Q9F1K9 19219048
    58 4v62:AK (2.9) BS02 CLA ? GO:0009523 ... Q9F1K9 19219048
    59 4v62:AK (2.9) BS03 CLA ? GO:0009523 ... Q9F1K9 19219048
    60 4v62:AK (2.9) BS04 CA ? GO:0009523 ... Q9F1K9 19219048
    61 4v62:AO (2.9) BS01 CA ? GO:0009654 ... P0A431 19219048
    62 4v62:AV (2.9) BS01 HEM ? GO:0005506 ... P0A386 19219048
    63 4v62:AX (2.9) BS01 CLA ? GO:0009523 ... Q9F1R6 19219048
    64 4v62:AZ (2.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 19219048
    65 4v62:AZ (2.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 19219048
    66 4v62:BA (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 19219048
    67 4v62:BA (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    68 4v62:BA (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    69 4v62:BA (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    70 4v62:BA (2.9) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    71 4v62:BA (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    72 4v62:BA (2.9) BS07 OEC 1.10.3.9 GO:0005506 ... P0A444 19219048
    73 4v62:BA (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 19219048
    74 4v62:BA (2.9) BS09 BCT 1.10.3.9 GO:0005506 ... P0A444 19219048
    75 4v62:BA (2.9) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 19219048
    76 4v62:BB (2.9) BS01 CLA ? GO:0009521 ... Q8DIQ1 19219048
    77 4v62:BB (2.9) BS02 CLA ? GO:0009521 ... Q8DIQ1 19219048
    78 4v62:BB (2.9) BS03 CLA ? GO:0009521 ... Q8DIQ1 19219048
    79 4v62:BB (2.9) BS04 CLA ? GO:0009521 ... Q8DIQ1 19219048
    80 4v62:BB (2.9) BS05 CLA ? GO:0009521 ... Q8DIQ1 19219048
    81 4v62:BB (2.9) BS06 CLA ? GO:0009521 ... Q8DIQ1 19219048
    82 4v62:BB (2.9) BS07 CLA ? GO:0009521 ... Q8DIQ1 19219048
    83 4v62:BB (2.9) BS08 CLA ? GO:0009521 ... Q8DIQ1 19219048
    84 4v62:BB (2.9) BS09 CLA ? GO:0009521 ... Q8DIQ1 19219048
    85 4v62:BB (2.9) BS10 CLA ? GO:0009521 ... Q8DIQ1 19219048
    86 4v62:BB (2.9) BS11 CLA ? GO:0009521 ... Q8DIQ1 19219048
    87 4v62:BB (2.9) BS12 CLA ? GO:0009521 ... Q8DIQ1 19219048
    88 4v62:BB (2.9) BS13 CLA ? GO:0009521 ... Q8DIQ1 19219048
    89 4v62:BB (2.9) BS14 CLA ? GO:0009521 ... Q8DIQ1 19219048
    90 4v62:BB (2.9) BS15 CLA ? GO:0009521 ... Q8DIQ1 19219048
    91 4v62:BB (2.9) BS16 CLA ? GO:0009521 ... Q8DIQ1 19219048
    92 4v62:BC (2.9) BS01 CLA ? GO:0005737 ... Q8DIF8 19219048
    93 4v62:BC (2.9) BS02 CLA ? GO:0005737 ... Q8DIF8 19219048
    94 4v62:BC (2.9) BS03 CLA ? GO:0005737 ... Q8DIF8 19219048
    95 4v62:BC (2.9) BS04 CLA ? GO:0005737 ... Q8DIF8 19219048
    96 4v62:BC (2.9) BS05 CLA ? GO:0005737 ... Q8DIF8 19219048
    97 4v62:BC (2.9) BS06 CLA ? GO:0005737 ... Q8DIF8 19219048
    98 4v62:BC (2.9) BS07 CLA ? GO:0005737 ... Q8DIF8 19219048
    99 4v62:BC (2.9) BS08 CLA ? GO:0005737 ... Q8DIF8 19219048
    100 4v62:BC (2.9) BS09 CLA ? GO:0005737 ... Q8DIF8 19219048
    101 4v62:BC (2.9) BS10 CLA ? GO:0005737 ... Q8DIF8 19219048
    102 4v62:BC (2.9) BS11 CLA ? GO:0005737 ... Q8DIF8 19219048
    103 4v62:BC (2.9) BS12 CLA ? GO:0005737 ... Q8DIF8 19219048
    104 4v62:BC (2.9) BS13 CLA ? GO:0005737 ... Q8DIF8 19219048
    105 4v62:BD (2.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    106 4v62:BD (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    107 4v62:BD (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    108 4v62:BD (2.9) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    109 4v62:BD (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    110 4v62:BD (2.9) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    111 4v62:BD (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    112 4v62:BD (2.9) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    113 4v62:BD (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 19219048
    114 4v62:BE (2.9) BS01 peptide ? GO:0005506 ... Q8DIP0 19219048
    115 4v62:BE (2.9) BS02 HEM ? GO:0005506 ... Q8DIP0 19219048
    116 4v62:BF (2.9) BS01 HEM ? GO:0005506 ... Q8DIN9 19219048
    117 4v62:BH (2.9) BS01 CLA ? GO:0009523 ... Q8DJ43 19219048
    118 4v62:BH (2.9) BS02 CLA ? GO:0009523 ... Q8DJ43 19219048
    119 4v62:BH (2.9) BS03 CLA ? GO:0009523 ... Q8DJ43 19219048
    120 4v62:BH (2.9) BS04 CLA ? GO:0009523 ... Q8DJ43 19219048
    121 4v62:BI (2.9) BS01 CLA ? GO:0005737 ... Q8DJZ6 19219048
    122 4v62:BK (2.9) BS01 peptide ? GO:0009523 ... Q9F1K9 19219048
    123 4v62:BK (2.9) BS02 CLA ? GO:0009523 ... Q9F1K9 19219048
    124 4v62:BK (2.9) BS03 CLA ? GO:0009523 ... Q9F1K9 19219048
    125 4v62:BK (2.9) BS04 CA ? GO:0009523 ... Q9F1K9 19219048
    126 4v62:BO (2.9) BS01 CA ? GO:0009654 ... P0A431 19219048
    127 4v62:BV (2.9) BS01 HEM ? GO:0005506 ... P0A386 19219048
    128 4v62:BX (2.9) BS01 CLA ? GO:0009523 ... Q9F1R6 19219048
    129 4v62:BZ (2.9) BS01 peptide ? GO:0009523 ... Q8DHJ2 19219048
    130 4v62:BZ (2.9) BS02 CLA ? GO:0009523 ... Q8DHJ2 19219048
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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