Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ub8:A (1.95) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 25470056
    2 4ub8:A (1.95) BS02 BCT 1.10.3.9 GO:0005506 ... P51765 25470056
    3 4ub8:A (1.95) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    4 4ub8:A (1.95) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    5 4ub8:A (1.95) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    6 4ub8:A (1.95) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    7 4ub8:A (1.95) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    8 4ub8:A (1.95) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 25470056
    9 4ub8:A (1.95) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    10 4ub8:B (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 25470056
    11 4ub8:B (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 25470056
    12 4ub8:B (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 25470056
    13 4ub8:B (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 25470056
    14 4ub8:B (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 25470056
    15 4ub8:B (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 25470056
    16 4ub8:B (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 25470056
    17 4ub8:B (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 25470056
    18 4ub8:B (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 25470056
    19 4ub8:B (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 25470056
    20 4ub8:B (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 25470056
    21 4ub8:B (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 25470056
    22 4ub8:B (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 25470056
    23 4ub8:B (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 25470056
    24 4ub8:B (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 25470056
    25 4ub8:B (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 25470056
    26 4ub8:C (1.95) BS01 OEX ? GO:0005737 ... D0VWR7 25470056
    27 4ub8:C (1.95) BS02 CLA ? GO:0005737 ... D0VWR7 25470056
    28 4ub8:C (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 25470056
    29 4ub8:C (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 25470056
    30 4ub8:C (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 25470056
    31 4ub8:C (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 25470056
    32 4ub8:C (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 25470056
    33 4ub8:C (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 25470056
    34 4ub8:C (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 25470056
    35 4ub8:C (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 25470056
    36 4ub8:C (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 25470056
    37 4ub8:C (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 25470056
    38 4ub8:C (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 25470056
    39 4ub8:C (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 25470056
    40 4ub8:D (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    41 4ub8:D (1.95) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    42 4ub8:D (1.95) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    43 4ub8:D (1.95) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    44 4ub8:D (1.95) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    45 4ub8:D (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    46 4ub8:D (1.95) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    47 4ub8:D (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    48 4ub8:D (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    49 4ub8:E (1.95) BS01 HEM ? GO:0005506 ... P12238 25470056
    50 4ub8:F (1.95) BS01 HEM ? GO:0005506 ... P12239 25470056
    51 4ub8:H (1.95) BS01 CLA ? GO:0009523 ... P19052 25470056
    52 4ub8:H (1.95) BS02 CLA ? GO:0009523 ... P19052 25470056
    53 4ub8:H (1.95) BS03 CLA ? GO:0009523 ... P19052 25470056
    54 4ub8:H (1.95) BS04 CLA ? GO:0009523 ... P19052 25470056
    55 4ub8:I (1.95) BS01 CLA ? GO:0005737 ... P12240 25470056
    56 4ub8:J (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 25470056
    57 4ub8:K (1.95) BS01 peptide ? GO:0005737 ... P19054 25470056
    58 4ub8:K (1.95) BS02 CLA ? GO:0005737 ... P19054 25470056
    59 4ub8:K (1.95) BS03 CLA ? GO:0005737 ... P19054 25470056
    60 4ub8:O (1.95) BS01 CA ? GO:0009523 ... D0VWR2 25470056
    61 4ub8:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    62 4ub8:X (1.95) BS01 CLA ? GO:0009523 ... D0VWR4 25470056
    63 4ub8:a (1.95) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 25470056
    64 4ub8:a (1.95) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    65 4ub8:a (1.95) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    66 4ub8:a (1.95) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    67 4ub8:a (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    68 4ub8:a (1.95) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 25470056
    69 4ub8:a (1.95) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 25470056
    70 4ub8:a (1.95) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    71 4ub8:a (1.95) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    72 4ub8:a (1.95) BS10 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    73 4ub8:b (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 25470056
    74 4ub8:b (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 25470056
    75 4ub8:b (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 25470056
    76 4ub8:b (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 25470056
    77 4ub8:b (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 25470056
    78 4ub8:b (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 25470056
    79 4ub8:b (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 25470056
    80 4ub8:b (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 25470056
    81 4ub8:b (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 25470056
    82 4ub8:b (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 25470056
    83 4ub8:b (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 25470056
    84 4ub8:b (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 25470056
    85 4ub8:b (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 25470056
    86 4ub8:b (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 25470056
    87 4ub8:b (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 25470056
    88 4ub8:b (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 25470056
    89 4ub8:c (1.95) BS01 OEX ? GO:0005737 ... D0VWR7 25470056
    90 4ub8:c (1.95) BS02 CA ? GO:0005737 ... D0VWR7 25470056
    91 4ub8:c (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 25470056
    92 4ub8:c (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 25470056
    93 4ub8:c (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 25470056
    94 4ub8:c (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 25470056
    95 4ub8:c (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 25470056
    96 4ub8:c (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 25470056
    97 4ub8:c (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 25470056
    98 4ub8:c (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 25470056
    99 4ub8:c (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 25470056
    100 4ub8:c (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 25470056
    101 4ub8:c (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 25470056
    102 4ub8:c (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 25470056
    103 4ub8:c (1.95) BS15 CLA ? GO:0005737 ... D0VWR7 25470056
    104 4ub8:d (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    105 4ub8:d (1.95) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    106 4ub8:d (1.95) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    107 4ub8:d (1.95) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    108 4ub8:d (1.95) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    109 4ub8:d (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    110 4ub8:d (1.95) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    111 4ub8:d (1.95) BS08 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    112 4ub8:d (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    113 4ub8:e (1.95) BS01 HEM ? GO:0005506 ... P12238 25470056
    114 4ub8:f (1.95) BS01 HEM ? GO:0005506 ... P12239 25470056
    115 4ub8:h (1.95) BS01 CLA ? GO:0009523 ... P19052 25470056
    116 4ub8:h (1.95) BS02 CLA ? GO:0009523 ... P19052 25470056
    117 4ub8:h (1.95) BS03 CLA ? GO:0009523 ... P19052 25470056
    118 4ub8:h (1.95) BS04 CLA ? GO:0009523 ... P19052 25470056
    119 4ub8:i (1.95) BS01 CLA ? GO:0005737 ... P12240 25470056
    120 4ub8:j (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 25470056
    121 4ub8:k (1.95) BS01 peptide ? GO:0005737 ... P19054 25470056
    122 4ub8:k (1.95) BS02 CLA ? GO:0005737 ... P19054 25470056
    123 4ub8:k (1.95) BS03 CLA ? GO:0005737 ... P19054 25470056
    124 4ub8:o (1.95) BS01 CA ? GO:0009523 ... D0VWR2 25470056
    125 4ub8:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    126 4ub8:z (1.95) BS01 peptide ? GO:0009523 ... D0VWR5 25470056
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218