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BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ub6:A (1.95) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 25470056
    2 4ub6:A (1.95) BS02 BCT 1.10.3.9 GO:0005506 ... P51765 25470056
    3 4ub6:A (1.95) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    4 4ub6:A (1.95) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    5 4ub6:A (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    6 4ub6:A (1.95) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    7 4ub6:A (1.95) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    8 4ub6:A (1.95) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    9 4ub6:A (1.95) BS09 OEX 1.10.3.9 GO:0005506 ... P51765 25470056
    10 4ub6:B (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 25470056
    11 4ub6:B (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 25470056
    12 4ub6:B (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 25470056
    13 4ub6:B (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 25470056
    14 4ub6:B (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 25470056
    15 4ub6:B (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 25470056
    16 4ub6:B (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 25470056
    17 4ub6:B (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 25470056
    18 4ub6:B (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 25470056
    19 4ub6:B (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 25470056
    20 4ub6:B (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 25470056
    21 4ub6:B (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 25470056
    22 4ub6:B (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 25470056
    23 4ub6:B (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 25470056
    24 4ub6:B (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 25470056
    25 4ub6:B (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 25470056
    26 4ub6:C (1.95) BS01 OEX ? GO:0005737 ... D0VWR7 25470056
    27 4ub6:C (1.95) BS02 CLA ? GO:0005737 ... D0VWR7 25470056
    28 4ub6:C (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 25470056
    29 4ub6:C (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 25470056
    30 4ub6:C (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 25470056
    31 4ub6:C (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 25470056
    32 4ub6:C (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 25470056
    33 4ub6:C (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 25470056
    34 4ub6:C (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 25470056
    35 4ub6:C (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 25470056
    36 4ub6:C (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 25470056
    37 4ub6:C (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 25470056
    38 4ub6:C (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 25470056
    39 4ub6:C (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 25470056
    40 4ub6:D (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    41 4ub6:D (1.95) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    42 4ub6:D (1.95) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    43 4ub6:D (1.95) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    44 4ub6:D (1.95) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    45 4ub6:D (1.95) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    46 4ub6:D (1.95) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    47 4ub6:D (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    48 4ub6:D (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    49 4ub6:E (1.95) BS01 HEM ? GO:0005506 ... P12238 25470056
    50 4ub6:F (1.95) BS01 HEM ? GO:0005506 ... P12239 25470056
    51 4ub6:H (1.95) BS01 CLA ? GO:0009523 ... P19052 25470056
    52 4ub6:H (1.95) BS02 CLA ? GO:0009523 ... P19052 25470056
    53 4ub6:H (1.95) BS03 CLA ? GO:0009523 ... P19052 25470056
    54 4ub6:H (1.95) BS04 CLA ? GO:0009523 ... P19052 25470056
    55 4ub6:I (1.95) BS01 CLA ? GO:0005737 ... P12240 25470056
    56 4ub6:J (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 25470056
    57 4ub6:K (1.95) BS01 peptide ? GO:0005737 ... P19054 25470056
    58 4ub6:K (1.95) BS02 CLA ? GO:0005737 ... P19054 25470056
    59 4ub6:K (1.95) BS03 CLA ? GO:0005737 ... P19054 25470056
    60 4ub6:O (1.95) BS01 CA ? GO:0009523 ... D0VWR2 25470056
    61 4ub6:V (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    62 4ub6:X (1.95) BS01 CLA ? GO:0009523 ... D0VWR4 25470056
    63 4ub6:Z (1.95) BS01 peptide ? GO:0009523 ... D0VWR5 25470056
    64 4ub6:a (1.95) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 25470056
    65 4ub6:a (1.95) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    66 4ub6:a (1.95) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    67 4ub6:a (1.95) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    68 4ub6:a (1.95) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    69 4ub6:a (1.95) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 25470056
    70 4ub6:a (1.95) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 25470056
    71 4ub6:a (1.95) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 25470056
    72 4ub6:a (1.95) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 25470056
    73 4ub6:b (1.95) BS01 CLA ? GO:0009521 ... D0VWR1 25470056
    74 4ub6:b (1.95) BS02 CLA ? GO:0009521 ... D0VWR1 25470056
    75 4ub6:b (1.95) BS03 CLA ? GO:0009521 ... D0VWR1 25470056
    76 4ub6:b (1.95) BS04 CLA ? GO:0009521 ... D0VWR1 25470056
    77 4ub6:b (1.95) BS05 CLA ? GO:0009521 ... D0VWR1 25470056
    78 4ub6:b (1.95) BS06 CLA ? GO:0009521 ... D0VWR1 25470056
    79 4ub6:b (1.95) BS07 CLA ? GO:0009521 ... D0VWR1 25470056
    80 4ub6:b (1.95) BS08 CLA ? GO:0009521 ... D0VWR1 25470056
    81 4ub6:b (1.95) BS09 CLA ? GO:0009521 ... D0VWR1 25470056
    82 4ub6:b (1.95) BS10 CLA ? GO:0009521 ... D0VWR1 25470056
    83 4ub6:b (1.95) BS11 CLA ? GO:0009521 ... D0VWR1 25470056
    84 4ub6:b (1.95) BS12 CLA ? GO:0009521 ... D0VWR1 25470056
    85 4ub6:b (1.95) BS13 CLA ? GO:0009521 ... D0VWR1 25470056
    86 4ub6:b (1.95) BS14 CLA ? GO:0009521 ... D0VWR1 25470056
    87 4ub6:b (1.95) BS15 CLA ? GO:0009521 ... D0VWR1 25470056
    88 4ub6:b (1.95) BS16 CLA ? GO:0009521 ... D0VWR1 25470056
    89 4ub6:c (1.95) BS01 OEX ? GO:0005737 ... D0VWR7 25470056
    90 4ub6:c (1.95) BS02 CA ? GO:0005737 ... D0VWR7 25470056
    91 4ub6:c (1.95) BS03 CLA ? GO:0005737 ... D0VWR7 25470056
    92 4ub6:c (1.95) BS04 CLA ? GO:0005737 ... D0VWR7 25470056
    93 4ub6:c (1.95) BS05 CLA ? GO:0005737 ... D0VWR7 25470056
    94 4ub6:c (1.95) BS06 CLA ? GO:0005737 ... D0VWR7 25470056
    95 4ub6:c (1.95) BS07 CLA ? GO:0005737 ... D0VWR7 25470056
    96 4ub6:c (1.95) BS08 CLA ? GO:0005737 ... D0VWR7 25470056
    97 4ub6:c (1.95) BS09 CLA ? GO:0005737 ... D0VWR7 25470056
    98 4ub6:c (1.95) BS10 CLA ? GO:0005737 ... D0VWR7 25470056
    99 4ub6:c (1.95) BS11 CLA ? GO:0005737 ... D0VWR7 25470056
    100 4ub6:c (1.95) BS12 CLA ? GO:0005737 ... D0VWR7 25470056
    101 4ub6:c (1.95) BS13 CLA ? GO:0005737 ... D0VWR7 25470056
    102 4ub6:c (1.95) BS14 CLA ? GO:0005737 ... D0VWR7 25470056
    103 4ub6:c (1.95) BS15 CLA ? GO:0005737 ... D0VWR7 25470056
    104 4ub6:d (1.95) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    105 4ub6:d (1.95) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    106 4ub6:d (1.95) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    107 4ub6:d (1.95) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    108 4ub6:d (1.95) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    109 4ub6:d (1.95) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    110 4ub6:d (1.95) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    111 4ub6:d (1.95) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    112 4ub6:d (1.95) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 25470056
    113 4ub6:e (1.95) BS01 HEM ? GO:0005506 ... P12238 25470056
    114 4ub6:f (1.95) BS01 HEM ? GO:0005506 ... P12239 25470056
    115 4ub6:h (1.95) BS01 CLA ? GO:0009523 ... P19052 25470056
    116 4ub6:h (1.95) BS02 CLA ? GO:0009523 ... P19052 25470056
    117 4ub6:h (1.95) BS03 CLA ? GO:0009523 ... P19052 25470056
    118 4ub6:i (1.95) BS01 CLA ? GO:0005737 ... P12240 25470056
    119 4ub6:j (1.95) BS01 MG ? GO:0009523 ... Q7DGD4 25470056
    120 4ub6:k (1.95) BS01 peptide ? GO:0005737 ... P19054 25470056
    121 4ub6:k (1.95) BS02 CLA ? GO:0005737 ... P19054 25470056
    122 4ub6:k (1.95) BS03 CLA ? GO:0005737 ... P19054 25470056
    123 4ub6:o (1.95) BS01 CA ? GO:0009523 ... D0VWR2 25470056
    124 4ub6:v (1.95) BS01 HEC ? GO:0005506 ... P0A387 25470056
    125 4ub6:z (1.95) BS01 peptide ? GO:0009523 ... D0VWR5 25470056
    126 4ub6:z (1.95) BS02 CLA ? GO:0009523 ... D0VWR5 25470056
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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