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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6dwd:A (1.7) BS01 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    2 6dwd:A (1.7) BS02 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    3 6dwd:A (1.7) BS03 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    4 6dwd:A (1.7) BS04 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    5 6dwd:A (1.7) BS05 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    6 6dwd:A (1.7) BS06 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    7 6dwd:A (1.7) BS07 GLY 3.1.5.- N/A Q9Y3Z3 30305425
    8 6dwd:A (1.7) BS08 GLY 3.1.5.- N/A Q9Y3Z3 30305425
    9 6dwd:A (1.7) BS09 TCE 3.1.5.- N/A Q9Y3Z3 30305425
    10 6dwd:B (1.7) BS01 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    11 6dwd:B (1.7) BS02 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    12 6dwd:B (1.7) BS03 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    13 6dwd:B (1.7) BS04 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    14 6dwd:B (1.7) BS05 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    15 6dwd:B (1.7) BS06 GLY 3.1.5.- N/A Q9Y3Z3 30305425
    16 6dwd:B (1.7) BS07 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    17 6dwd:C (1.7) BS01 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    18 6dwd:C (1.7) BS02 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    19 6dwd:C (1.7) BS03 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    20 6dwd:C (1.7) BS04 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    21 6dwd:C (1.7) BS05 MG 3.1.5.- N/A Q9Y3Z3 30305425
    22 6dwd:C (1.7) BS06 GLY 3.1.5.- N/A Q9Y3Z3 30305425
    23 6dwd:C (1.7) BS07 PO4 3.1.5.- N/A Q9Y3Z3 30305425
    24 6dwd:C (1.7) BS08 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    25 6dwd:C (1.7) BS09 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    26 6dwd:C (1.7) BS10 GLY 3.1.5.- N/A Q9Y3Z3 30305425
    27 6dwd:D (1.7) BS01 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    28 6dwd:D (1.7) BS02 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    29 6dwd:D (1.7) BS03 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    30 6dwd:D (1.7) BS04 GTP 3.1.5.- N/A Q9Y3Z3 30305425
    31 6dwd:D (1.7) BS05 MG 3.1.5.- N/A Q9Y3Z3 30305425
    32 6dwd:D (1.7) BS06 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    33 6dwd:D (1.7) BS07 HDV 3.1.5.- N/A Q9Y3Z3 30305425
    34 6dwd:D (1.7) BS08 GLY 3.1.5.- N/A Q9Y3Z3 30305425
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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