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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5m45:A (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    2 5m45:A (1.87) BS02 ACT 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    3 5m45:A (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    4 5m45:B (1.87) BS01 AMP 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    5 5m45:B (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    6 5m45:B (1.87) BS03 ACT 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    7 5m45:C (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    8 5m45:D (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    9 5m45:D (1.87) BS02 ACT 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    10 5m45:D (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    11 5m45:E (1.87) BS01 AMP 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    12 5m45:E (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    13 5m45:E (1.87) BS03 ACT 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    14 5m45:F (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    15 5m45:G (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    16 5m45:G (1.87) BS02 ACT 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    17 5m45:G (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    18 5m45:H (1.87) BS01 AMP 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    19 5m45:H (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    20 5m45:H (1.87) BS03 ACT 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    21 5m45:I (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    22 5m45:J (1.87) BS01 MN 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    23 5m45:J (1.87) BS02 ACT 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    24 5m45:J (1.87) BS03 MG 6.4.1.6 GO:0003824 ... Q8RM03 28775283
    25 5m45:K (1.87) BS01 AMP 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    26 5m45:K (1.87) BS02 MG 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    27 5m45:K (1.87) BS03 ACT 6.4.1.6 GO:0005524 ... Q8RM04 28775283
    28 5m45:L (1.87) BS01 ZN 6.4.1.6 GO:0005524 ... Q8RM02 28775283
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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