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BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v82:AA (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P0A444 21367867
    2 4v82:AA (3.2) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 21367867
    3 4v82:AA (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    4 4v82:AA (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    5 4v82:AA (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    6 4v82:AA (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    7 4v82:AA (3.2) BS07 MST 1.10.3.9 GO:0005506 ... P0A444 21367867
    8 4v82:AA (3.2) BS08 OEC 1.10.3.9 GO:0005506 ... P0A444 21367867
    9 4v82:AA (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    10 4v82:AA (3.2) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    11 4v82:AA (3.2) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    12 4v82:AB (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 21367867
    13 4v82:AB (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 21367867
    14 4v82:AB (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 21367867
    15 4v82:AB (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 21367867
    16 4v82:AB (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 21367867
    17 4v82:AB (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 21367867
    18 4v82:AB (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 21367867
    19 4v82:AB (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 21367867
    20 4v82:AB (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 21367867
    21 4v82:AB (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 21367867
    22 4v82:AB (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 21367867
    23 4v82:AB (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 21367867
    24 4v82:AB (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 21367867
    25 4v82:AB (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 21367867
    26 4v82:AB (3.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 21367867
    27 4v82:AB (3.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 21367867
    28 4v82:AC (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 21367867
    29 4v82:AC (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 21367867
    30 4v82:AC (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 21367867
    31 4v82:AC (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 21367867
    32 4v82:AC (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 21367867
    33 4v82:AC (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 21367867
    34 4v82:AC (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 21367867
    35 4v82:AC (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 21367867
    36 4v82:AC (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 21367867
    37 4v82:AC (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 21367867
    38 4v82:AC (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 21367867
    39 4v82:AC (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 21367867
    40 4v82:AC (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 21367867
    41 4v82:AD (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    42 4v82:AD (3.2) BS02 BCT 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    43 4v82:AD (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    44 4v82:AD (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    45 4v82:AD (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    46 4v82:AD (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    47 4v82:AD (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    48 4v82:AD (3.2) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    49 4v82:AD (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    50 4v82:AE (3.2) BS01 peptide ? GO:0005506 ... Q8DIP0 21367867
    51 4v82:AE (3.2) BS02 HEM ? GO:0005506 ... Q8DIP0 21367867
    52 4v82:AF (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 21367867
    53 4v82:AH (3.2) BS01 CLA ? GO:0009523 ... Q8DJ43 21367867
    54 4v82:AH (3.2) BS02 CLA ? GO:0009523 ... Q8DJ43 21367867
    55 4v82:AH (3.2) BS03 CLA ? GO:0009523 ... Q8DJ43 21367867
    56 4v82:AH (3.2) BS04 CLA ? GO:0009523 ... Q8DJ43 21367867
    57 4v82:AI (3.2) BS01 CLA ? GO:0005737 ... Q8DJZ6 21367867
    58 4v82:AI (3.2) BS02 CLA ? GO:0005737 ... Q8DJZ6 21367867
    59 4v82:AK (3.2) BS01 peptide ? GO:0009523 ... Q9F1K9 21367867
    60 4v82:AK (3.2) BS02 CLA ? GO:0009523 ... Q9F1K9 21367867
    61 4v82:AK (3.2) BS03 CLA ? GO:0009523 ... Q9F1K9 21367867
    62 4v82:AK (3.2) BS04 CA ? GO:0009523 ... Q9F1K9 21367867
    63 4v82:AV (3.2) BS01 HEM ? GO:0005506 ... P0A386 21367867
    64 4v82:AZ (3.2) BS01 peptide ? GO:0009523 ... Q8DHJ2 21367867
    65 4v82:AZ (3.2) BS02 CLA ? GO:0009523 ... Q8DHJ2 21367867
    66 4v82:BA (3.2) BS01 BCT 1.10.3.9 GO:0005506 ... P0A444 21367867
    67 4v82:BA (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    68 4v82:BA (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    69 4v82:BA (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    70 4v82:BA (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    71 4v82:BA (3.2) BS06 MST 1.10.3.9 GO:0005506 ... P0A444 21367867
    72 4v82:BA (3.2) BS07 OEC 1.10.3.9 GO:0005506 ... P0A444 21367867
    73 4v82:BA (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 21367867
    74 4v82:BA (3.2) BS09 FE2 1.10.3.9 GO:0005506 ... P0A444 21367867
    75 4v82:BA (3.2) BS10 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    76 4v82:BA (3.2) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 21367867
    77 4v82:BB (3.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 21367867
    78 4v82:BB (3.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 21367867
    79 4v82:BB (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 21367867
    80 4v82:BB (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 21367867
    81 4v82:BB (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 21367867
    82 4v82:BB (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 21367867
    83 4v82:BB (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 21367867
    84 4v82:BB (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 21367867
    85 4v82:BB (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 21367867
    86 4v82:BB (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 21367867
    87 4v82:BB (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 21367867
    88 4v82:BB (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 21367867
    89 4v82:BB (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 21367867
    90 4v82:BB (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 21367867
    91 4v82:BB (3.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 21367867
    92 4v82:BB (3.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 21367867
    93 4v82:BC (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 21367867
    94 4v82:BC (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 21367867
    95 4v82:BC (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 21367867
    96 4v82:BC (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 21367867
    97 4v82:BC (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 21367867
    98 4v82:BC (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 21367867
    99 4v82:BC (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 21367867
    100 4v82:BC (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 21367867
    101 4v82:BC (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 21367867
    102 4v82:BC (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 21367867
    103 4v82:BC (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 21367867
    104 4v82:BC (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 21367867
    105 4v82:BC (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 21367867
    106 4v82:BD (3.2) BS01 BCT 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    107 4v82:BD (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    108 4v82:BD (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    109 4v82:BD (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    110 4v82:BD (3.2) BS05 FE2 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    111 4v82:BD (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    112 4v82:BD (3.2) BS07 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    113 4v82:BD (3.2) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    114 4v82:BD (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 21367867
    115 4v82:BE (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 21367867
    116 4v82:BF (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 21367867
    117 4v82:BH (3.2) BS01 CLA ? GO:0009523 ... Q8DJ43 21367867
    118 4v82:BH (3.2) BS02 CLA ? GO:0009523 ... Q8DJ43 21367867
    119 4v82:BH (3.2) BS03 CLA ? GO:0009523 ... Q8DJ43 21367867
    120 4v82:BH (3.2) BS04 CLA ? GO:0009523 ... Q8DJ43 21367867
    121 4v82:BI (3.2) BS01 CLA ? GO:0005737 ... Q8DJZ6 21367867
    122 4v82:BI (3.2) BS02 CLA ? GO:0005737 ... Q8DJZ6 21367867
    123 4v82:BJ (3.2) BS01 peptide ? GO:0009523 ... P59087 21367867
    124 4v82:BK (3.2) BS01 peptide ? GO:0009523 ... Q9F1K9 21367867
    125 4v82:BK (3.2) BS02 CLA ? GO:0009523 ... Q9F1K9 21367867
    126 4v82:BK (3.2) BS03 CLA ? GO:0009523 ... Q9F1K9 21367867
    127 4v82:BK (3.2) BS04 CA ? GO:0009523 ... Q9F1K9 21367867
    128 4v82:BO (3.2) BS01 CA ? GO:0009654 ... P0A431 21367867
    129 4v82:BV (3.2) BS01 HEM ? GO:0005506 ... P0A386 21367867
    130 4v82:BZ (3.2) BS01 peptide ? GO:0009523 ... Q8DHJ2 21367867
    131 4v82:BZ (3.2) BS02 CLA ? GO:0009523 ... Q8DHJ2 21367867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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