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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13401 1fv3:B (2.3) BS01 GAL 3.4.24.68 GO:0005576 ... P04958 11418600
    13402 1fv5:A (-1.00) BS01 ZN ? GO:0006357 ... Q9VPQ6 11080638
    13403 1fv9:A (3.0) BS01 172 3.4.21.73 GO:0004252 ... P00749 11052791 PDBbind: -logKd/Ki=5.00, IC50=10uM
    13404 1fvi:A (2.0) BS01 AMP 6.5.1.- GO:0000166 ... A7RCB1 11106756
    13405 1fvo:A (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    13406 1fvo:B (2.6) BS01 CP 2.1.3.3 GO:0000050 ... P00480 11237854
    13407 1fvp:A (2.7) BS01 FMA ? GO:0016705 ... P12745 15299728
    13408 1fvp:A (2.7) BS02 FMA ? GO:0016705 ... P12745 15299728
    13409 1fvp:A (2.7) BS03 FMA ? GO:0016705 ... P12745 15299728
    13410 1fvp:B (2.7) BS01 FMA ? GO:0016705 ... P12745 15299728
    13411 1fvp:B (2.7) BS02 FMA ? GO:0016705 ... P12745 15299728
    13412 1fvp:B (2.7) BS03 FMA ? GO:0016705 ... P12745 15299728
    13413 1fvs:A (-1.00) BS01 CU 7.2.2.8 GO:0046872 ... P38995 11083871
    13414 1fvt:A (2.2) BS01 106 2.7.11.22 GO:0000082 ... P24941 11141566 PDBbind: -logKd/Ki=7.22, IC50=60nM
    BindingDB: IC50=60nM
    13415 1fvu:B (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    13416 1fvu:D (1.8) BS01 MG ? GO:0005576 ... P22030 11148028
    13417 1fvv:A (2.8) BS01 107 2.7.11.22 GO:0000082 ... P24941 11141566 PDBbind: -logKd/Ki=8.00, IC50=10nM
    13418 1fvv:C (2.8) BS01 107 2.7.11.22 GO:0000082 ... P24941 11141566
    13419 1fvx:A (1.9) BS01 FMN ? GO:0009055 ... P00322 9063874
    13420 1fw0:A (1.9) BS01 KAI ? GO:0015276 ... P19491 11086992 PDBbind: -logKd/Ki=5.43, Ki=3690nM
    BindingDB: EC50=380000nM, Ki=3690nM
    13421 1fw1:A (1.9) BS01 SO4 2.5.1.18
    5.2.1.2
    GO:0003824 ... O43708 11327815
    13422 1fw1:A (1.9) BS02 GSH 2.5.1.18
    5.2.1.2
    GO:0003824 ... O43708 11327815
    13423 1fw2:A (2.6) BS01 CA 3.1.1.32
    3.1.1.4
    GO:0004620 ... P0A921 11371166
    13424 1fw4:A (1.7) BS01 CA ? GO:0005509 ... P62157 11320306
    13425 1fw4:A (1.7) BS02 CA ? GO:0005509 ... P62157 11320306
    13426 1fw6:A (2.7) BS01 dna ? GO:0003677 ... Q56215 11172706
    13427 1fw6:A (2.7) BS02 dna ? GO:0003677 ... Q56215 11172706
    13428 1fw6:A (2.7) BS03 ADP ? GO:0003677 ... Q56215 11172706
    13429 1fw6:B (2.7) BS01 dna ? GO:0003677 ... Q56215 11172706
    13430 1fw6:B (2.7) BS02 dna ? GO:0003677 ... Q56215 11172706
    13431 1fw6:B (2.7) BS03 ADP ? GO:0003677 ... Q56215 11172706
    13432 1fwa:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13433 1fwa:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13434 1fwa:C (2.0) BS03 CO3 3.5.1.5 GO:0005515 ... P18314 9201965
    13435 1fwb:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13436 1fwb:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13437 1fwc:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13438 1fwc:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13439 1fwd:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13440 1fwd:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13441 1fwe:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13442 1fwe:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13443 1fwe:C (2.0) BS03 HAE 3.5.1.5 GO:0005515 ... P18314 9201965 PDBbind: -logKd/Ki=5.60, Ki=2.5uM
    13444 1fwf:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13445 1fwf:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13446 1fwg:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13447 1fwg:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13448 1fwh:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13449 1fwh:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13450 1fwi:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 8702515
    13451 1fwj:C (2.2) BS01 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13452 1fwj:C (2.2) BS02 NI 3.5.1.5 GO:0005515 ... P18314 9201965
    13453 1fwk:A (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    13454 1fwk:B (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    13455 1fwk:C (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    13456 1fwk:D (2.1) BS01 ADP 2.7.1.39 GO:0004413 ... Q58504 11188689
    13457 1fwm:A (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    13458 1fwm:B (2.2) BS01 SO4 2.1.1.45 GO:0000287 ... P0A884 16615077
    13459 1fwn:A (1.94) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13460 1fwn:B (1.94) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13461 1fwq:A (-1.00) BS01 ZN ? GO:0005085 ... P47224 7651540
    13462 1fws:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    13463 1fws:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    13464 1fwt:A (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13465 1fwt:A (1.9) BS02 E4P 2.5.1.55 GO:0005737 ... O66496 11115499
    13466 1fwt:B (1.9) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13467 1fwu:A (1.9) BS01 SGA ? N/A Q61830 11152606 PDBbind: -logKd/Ki=3.70, Kd=0.20mM
    13468 1fwv:A (2.2) BS01 SGA ? N/A Q61830 11152606 PDBbind: -logKd/Ki=3.72, Kd=0.19mM
    13469 1fww:A (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    13470 1fww:A (1.85) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 19228070
    13471 1fww:B (1.85) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 19228070
    13472 1fwx:A (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13473 1fwx:A (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13474 1fwx:A (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13475 1fwx:B (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13476 1fwx:B (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13477 1fwx:B (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13478 1fwx:C (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13479 1fwx:C (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13480 1fwx:C (1.6) BS03 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13481 1fwx:C (1.6) BS04 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13482 1fwx:D (1.6) BS01 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13483 1fwx:D (1.6) BS02 CA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13484 1fwx:D (1.6) BS03 CUA 1.7.2.4 GO:0004129 ... Q51705 11024061
    13485 1fwy:A (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    13486 1fwy:B (2.3) BS01 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... P0ACC7 10428949
    13487 1fwz:A (2.3) BS01 SO4 ? GO:0003677 ... P0DJL7 11320302
    13488 1fwz:A (2.3) BS02 ZN ? GO:0003677 ... P0DJL7 11320302
    13489 1fx1:A (2.0) BS01 FMN ? GO:0009055 ... P00323 N/A
    13490 1fx4:A (1.9) BS01 MG 4.6.1.1 GO:0009190 ... Q99280 11157750
    13491 1fx5:A (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    13492 1fx5:A (2.2) BS02 CA ? GO:0030246 ... P22972 11090284
    13493 1fx5:B (2.2) BS01 MN ? GO:0030246 ... P22972 11090284
    13494 1fx5:B (2.2) BS02 CA ? GO:0030246 ... P22972 11090284
    13495 1fx6:A (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13496 1fx6:B (2.06) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13497 1fx7:A (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    13498 1fx7:A (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    13499 1fx7:A (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    13500 1fx7:B (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    13501 1fx7:B (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    13502 1fx7:B (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    13503 1fx7:C (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    13504 1fx7:C (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    13505 1fx7:C (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    13506 1fx7:D (2.0) BS01 CO ? GO:0003677 ... P9WMH1 11053439
    13507 1fx7:D (2.0) BS02 CO ? GO:0003677 ... P9WMH1 11053439
    13508 1fx7:D (2.0) BS03 CO ? GO:0003677 ... P9WMH1 11053439
    13509 1fx8:A (2.2) BS01 GOL ? GO:0005372 ... P0AER0 11039922
    13510 1fx8:A (2.2) BS02 GOL ? GO:0005372 ... P0AER0 11039922
    13511 1fx9:A (2.0) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13512 1fx9:A (2.0) BS02 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13513 1fx9:A (2.0) BS03 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13514 1fx9:B (2.0) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13515 1fx9:B (2.0) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13516 1fx9:B (2.0) BS03 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13517 1fx9:B (2.0) BS04 SO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13518 1fxa:A (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    13519 1fxa:B (2.5) BS01 FES ? GO:0009055 ... P0A3C7 1902376
    13520 1fxd:A (1.7) BS01 F3S ? GO:0005506 ... P00209 2056535
    13521 1fxf:A (1.85) BS01 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13522 1fxf:A (1.85) BS02 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13523 1fxf:A (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13524 1fxf:A (1.85) BS04 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13525 1fxf:A (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13526 1fxf:B (1.85) BS01 MJI 3.1.1.4 GO:0002446 ... P00592 11170377
    13527 1fxf:B (1.85) BS02 CA 3.1.1.4 GO:0002446 ... P00592 11170377
    13528 1fxf:B (1.85) BS03 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13529 1fxf:B (1.85) BS04 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13530 1fxf:B (1.85) BS05 PO4 3.1.1.4 GO:0002446 ... P00592 11170377
    13531 1fxh:A (1.97) BS01 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    13532 1fxh:B (1.97) BS01 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    13533 1fxh:B (1.97) BS02 PAC 3.5.1.11 GO:0016787 ... P06875 11239085
    13534 1fxi:A (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13535 1fxi:B (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13536 1fxi:C (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13537 1fxi:D (2.2) BS01 FES ? GO:0009055 ... P00250 2123937
    13538 1fxl:A (1.8) BS01 rna ? GO:0003676 ... P26378 11175903
    13539 1fxo:A (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13540 1fxo:A (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13541 1fxo:A (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13542 1fxo:B (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13543 1fxo:B (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13544 1fxo:B (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13545 1fxo:C (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13546 1fxo:C (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13547 1fxo:C (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13548 1fxo:D (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13549 1fxo:D (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13550 1fxo:D (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13551 1fxo:E (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13552 1fxo:E (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13553 1fxo:E (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13554 1fxo:F (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13555 1fxo:F (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13556 1fxo:F (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13557 1fxo:G (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13558 1fxo:G (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13559 1fxo:G (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13560 1fxo:H (1.66) BS01 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13561 1fxo:H (1.66) BS02 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13562 1fxo:H (1.66) BS03 TMP 2.7.7.24 GO:0000166 ... Q9HU22 11118200
    13563 1fxp:A (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13564 1fxp:B (1.8) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13565 1fxq:A (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13566 1fxq:A (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    13567 1fxq:B (1.8) BS01 PEP 2.5.1.55 GO:0005737 ... O66496 11115499
    13568 1fxq:B (1.8) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    13569 1fxr:A (2.3) BS01 SF4 ? GO:0005506 ... P00210 7803404
    13570 1fxr:B (2.3) BS01 SO4 ? GO:0005506 ... P00210 7803404
    13571 1fxr:B (2.3) BS02 SF4 ? GO:0005506 ... P00210 7803404
    13572 1fxs:A (2.3) BS01 NAP 1.1.1.271 GO:0005737 ... P32055 9862812
    13573 1fxu:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P55859 11134924
    13574 1fxu:A (2.2) BS02 GU7 2.4.2.1 GO:0003824 ... P55859 11134924
    13575 1fxv:A (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    13576 1fxv:B (2.25) BS01 PNN 3.5.1.11 GO:0016787 ... P06875 11239085
    13577 1fxv:B (2.25) BS02 CA 3.5.1.11 GO:0016787 ... P06875 11239085
    13578 1fxw:A (2.1) BS01 CA 3.1.1.47 GO:0003847 ... Q29460 11522926
    13579 1fxy:A (2.15) BS01 0G6 3.4.21.4 GO:0004252 ... P07477 9707558
    13580 1fy4:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    13581 1fy5:A (0.81) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 11134922
    13582 1fy6:A (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13583 1fy6:A (1.89) BS02 A5P 2.5.1.55 GO:0005737 ... O66496 11115499
    13584 1fy6:B (1.89) BS01 PO4 2.5.1.55 GO:0005737 ... O66496 11115499
    13585 1fy7:A (2.0) BS01 COA 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q08649 11106757
    13586 1fy8:E (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00763 11420435
    13587 1fyd:A (2.25) BS01 AMP 6.3.1.5 GO:0003952 ... P08164 11375500
    13588 1fyd:A (2.25) BS02 POP 6.3.1.5 GO:0003952 ... P08164 11375500
    13589 1fyf:A (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13590 1fyf:A (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13591 1fyf:B (1.65) BS01 ZN 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13592 1fyf:B (1.65) BS02 SSA 6.1.1.3 GO:0000166 ... P0A8M3 11136973
    13593 1fyk:A (2.5) BS01 dna ? GO:0003700 ... P22121 11599025
    13594 1fyn:A (2.3) BS01 peptide 2.7.10.2 N/A P06241 7664083
    13595 1fyr:A (2.4) BS01 peptide ? N/A P62993 11063574
    13596 1fyr:B (2.4) BS01 peptide ? N/A P62993 11063574
    13597 1fyr:C (2.4) BS01 peptide ? N/A P62993 11063574
    13598 1fyr:D (2.4) BS01 peptide ? N/A P62993 11063574
    13599 1fys:A (2.0) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 11513591
    13600 1fyt:A (2.6) BS01 peptide ? GO:0006955 ... P01903 11060013

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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