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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876401 8ukq:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    876402 8ukq:B (3.5) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    876403 8ukq:C (3.5) BS01 ZN ? GO:0000428 ... P16370 38393762
    876404 8ukq:I (3.5) BS01 ZN ? GO:0000428 ... P27999 38393762
    876405 8ukq:I (3.5) BS02 ZN ? GO:0000428 ... P27999 38393762
    876406 8ukq:J (3.5) BS01 ZN ? GO:0000428 ... P22139 38393762
    876407 8ukq:L (3.5) BS01 ZN ? GO:0000428 ... P40422 38393762
    876408 8ukr:A (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    876409 8ukr:A (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876410 8ukr:A (3.78) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876411 8ukr:A (3.78) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876412 8ukr:A (3.78) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876413 8ukr:A (3.78) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    876414 8ukr:B (3.78) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    876415 8ukr:B (3.78) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    876416 8ukr:B (3.78) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    876417 8ukr:B (3.78) BS04 ATP 2.7.7.6 GO:0000428 ... P08518 38393762
    876418 8ukr:C (3.78) BS01 ZN ? GO:0000428 ... P16370 38393762
    876419 8ukr:I (3.78) BS01 ZN ? GO:0000428 ... P27999 38393762
    876420 8ukr:I (3.78) BS02 ZN ? GO:0000428 ... P27999 38393762
    876421 8ukr:J (3.78) BS01 ZN ? GO:0000428 ... P22139 38393762
    876422 8ukr:L (3.78) BS01 ZN ? GO:0000428 ... P40422 38393762
    876423 8uks:A (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    876424 8uks:A (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876425 8uks:A (3.4) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876426 8uks:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876427 8uks:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876428 8uks:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    876429 8uks:A (3.4) BS07 CTP 2.7.7.6 GO:0000428 ... P04050 38393762
    876430 8uks:B (3.4) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    876431 8uks:B (3.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    876432 8uks:B (3.4) BS03 CTP 2.7.7.6 GO:0000428 ... P08518 38393762
    876433 8uks:B (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    876434 8uks:C (3.4) BS01 ZN ? GO:0000428 ... P16370 38393762
    876435 8uks:I (3.4) BS01 ZN ? GO:0000428 ... P27999 38393762
    876436 8uks:I (3.4) BS02 ZN ? GO:0000428 ... P27999 38393762
    876437 8uks:J (3.4) BS01 ZN ? GO:0000428 ... P22139 38393762
    876438 8uks:L (3.4) BS01 ZN ? GO:0000428 ... P40422 38393762
    876439 8ukt:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    876440 8ukt:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876441 8ukt:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876442 8ukt:A (3.6) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    876443 8ukt:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876444 8ukt:A (3.6) BS06 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876445 8ukt:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    876446 8ukt:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    876447 8ukt:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    876448 8ukt:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    876449 8ukt:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    876450 8ukt:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    876451 8ukt:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    876452 8ukt:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    876453 8uku:A (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P04050 38393762
    876454 8uku:A (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876455 8uku:A (3.6) BS03 dna 2.7.7.6 GO:0000428 ... P04050 38393762
    876456 8uku:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876457 8uku:A (3.6) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38393762
    876458 8uku:A (3.6) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38393762
    876459 8uku:B (3.6) BS01 rna 2.7.7.6 GO:0000428 ... P08518 38393762
    876460 8uku:B (3.6) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38393762
    876461 8uku:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38393762
    876462 8uku:B (3.6) BS04 POP 2.7.7.6 GO:0000428 ... P08518 38393762
    876463 8uku:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38393762
    876464 8uku:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38393762
    876465 8uku:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38393762
    876466 8uku:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38393762
    876467 8uku:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38393762
    876468 8ukz:A (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876469 8ukz:A (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876470 8ukz:A (1.95) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876471 8ukz:B (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876472 8ukz:B (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876473 8ukz:C (1.95) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876474 8ukz:C (1.95) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    876475 8ul7:A (1.85) BS01 SIA N/A N/A B1V1R3 39251137
    876476 8uld:A (1.8) BS01 WYR 2.1.1.-
    2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X7 38309201
    876477 8ule:A (1.89) BS01 5N6 N/A N/A B1V1R3 39251137
    876478 8ulg:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    876479 8ulg:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    876480 8ulg:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    876481 8ulg:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    876482 8um0:A (2.46) BS01 GAL N/A N/A B1V1R3 39251137
    876483 8um0:A (2.46) BS02 X1F N/A N/A B1V1R3 39251137
    876484 8um3:A (1.925) BS01 W41 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 N/A
    876485 8um6:B (1.95) BS01 CU ? N/A P94431 38342077
    876486 8umc:A (2.5) BS01 MN ? N/A A0A2I9DAN1 38508304
    876487 8umc:C (2.5) BS01 MN ? N/A A0A2I9DAN1 38508304
    876488 8umj:A (1.93) BS01 GPJ N/A N/A A0A1D6NVZ6 39159366
    876489 8umj:A (1.93) BS02 S3P N/A N/A A0A1D6NVZ6 39159366
    876490 8umj:B (1.93) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876491 8umj:B (1.93) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876492 8umk:A (1.9) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876493 8umk:A (1.9) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876494 8umk:B (1.9) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876495 8umk:B (1.9) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876496 8uml:A (1.83) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876497 8uml:A (1.83) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876498 8uml:B (1.83) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876499 8uml:B (1.83) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876500 8umm:A (2.2) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876501 8umm:A (2.2) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876502 8umm:B (2.2) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876503 8umm:B (2.2) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876504 8umn:A (1.6) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876505 8umn:A (1.6) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876506 8umn:B (1.6) BS01 S3P N/A N/A A0A1D6NVZ6 39159366
    876507 8umn:B (1.6) BS02 GPJ N/A N/A A0A1D6NVZ6 39159366
    876508 8umo:A (2.6) BS01 peptide ? N/A P06339 38158698
    876509 8umo:K (2.6) BS01 peptide ? N/A Q9WU32 38158698
    876510 8umt:B (3.33) BS01 AGS ? GO:0003677 ... P35250 38669181
    876511 8umt:C (3.33) BS01 MG ? GO:0003677 ... P40937 38669181
    876512 8umt:C (3.33) BS02 AGS ? GO:0003677 ... P40937 38669181
    876513 8umt:D (3.33) BS01 AGS ? GO:0003677 ... P35249 38669181
    876514 8umt:E (3.33) BS01 ADP ? GO:0000731 ... P40938 38669181
    876515 8umu:A (3.16) BS01 AGS ? GO:0003677 ... Q8WVB6 38669181
    876516 8umu:B (3.16) BS01 AGS ? GO:0003677 ... P35250 38669181
    876517 8umu:B (3.16) BS02 AGS ? GO:0003677 ... P35250 38669181
    876518 8umu:C (3.16) BS01 AGS ? GO:0003677 ... P40937 38669181
    876519 8umu:E (3.16) BS01 ADP ? GO:0000731 ... P40938 38669181
    876520 8umv:A (2.75) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    876521 8umv:A (2.75) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    876522 8umv:A (2.75) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    876523 8umv:B (2.75) BS01 dna ? GO:0003677 ... P35250 38669181
    876524 8umv:B (2.75) BS02 AGS ? GO:0003677 ... P35250 38669181
    876525 8umv:B (2.75) BS03 AGS ? GO:0003677 ... P35250 38669181
    876526 8umv:C (2.75) BS01 dna ? GO:0003677 ... P40937 38669181
    876527 8umv:C (2.75) BS02 AGS ? GO:0003677 ... P40937 38669181
    876528 8umv:C (2.75) BS03 AGS ? GO:0003677 ... P40937 38669181
    876529 8umv:D (2.75) BS01 dna ? GO:0003677 ... P35249 38669181
    876530 8umv:D (2.75) BS02 AGS ? GO:0003677 ... P35249 38669181
    876531 8umv:D (2.75) BS03 AGS ? GO:0003677 ... P35249 38669181
    876532 8umv:E (2.75) BS01 dna ? GO:0000731 ... P40938 38669181
    876533 8umv:E (2.75) BS02 AGS ? GO:0000731 ... P40938 38669181
    876534 8umv:E (2.75) BS03 ADP ? GO:0000731 ... P40938 38669181
    876535 8umw:A (2.93) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    876536 8umw:A (2.93) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    876537 8umw:A (2.93) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    876538 8umw:B (2.93) BS01 AGS ? GO:0003677 ... P35250 38669181
    876539 8umw:B (2.93) BS02 AGS ? GO:0003677 ... P35250 38669181
    876540 8umw:C (2.93) BS01 dna ? GO:0003677 ... P40937 38669181
    876541 8umw:C (2.93) BS02 AGS ? GO:0003677 ... P40937 38669181
    876542 8umw:C (2.93) BS03 AGS ? GO:0003677 ... P40937 38669181
    876543 8umw:D (2.93) BS01 dna ? GO:0003677 ... P35249 38669181
    876544 8umw:D (2.93) BS02 AGS ? GO:0003677 ... P35249 38669181
    876545 8umw:D (2.93) BS03 MG ? GO:0003677 ... P35249 38669181
    876546 8umw:D (2.93) BS04 AGS ? GO:0003677 ... P35249 38669181
    876547 8umw:E (2.93) BS01 dna ? GO:0000731 ... P40938 38669181
    876548 8umw:E (2.93) BS02 AGS ? GO:0000731 ... P40938 38669181
    876549 8umw:E (2.93) BS03 ADP ? GO:0000731 ... P40938 38669181
    876550 8umy:A (2.83) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    876551 8umy:A (2.83) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    876552 8umy:A (2.83) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    876553 8umy:B (2.83) BS01 dna ? GO:0003677 ... P35250 38669181
    876554 8umy:B (2.83) BS02 AGS ? GO:0003677 ... P35250 38669181
    876555 8umy:B (2.83) BS03 MG ? GO:0003677 ... P35250 38669181
    876556 8umy:B (2.83) BS04 AGS ? GO:0003677 ... P35250 38669181
    876557 8umy:C (2.83) BS01 dna ? GO:0003677 ... P40937 38669181
    876558 8umy:C (2.83) BS02 AGS ? GO:0003677 ... P40937 38669181
    876559 8umy:C (2.83) BS03 AGS ? GO:0003677 ... P40937 38669181
    876560 8umy:D (2.83) BS01 dna ? GO:0003677 ... P35249 38669181
    876561 8umy:D (2.83) BS02 AGS ? GO:0003677 ... P35249 38669181
    876562 8umy:D (2.83) BS03 MG ? GO:0003677 ... P35249 38669181
    876563 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    876564 8umy:E (2.83) BS01 dna ? GO:0000731 ... P40938 38669181
    876565 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    876566 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    876567 8un0:A (3.0) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    876568 8un0:A (3.0) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    876569 8un0:A (3.0) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    876570 8un0:B (3.0) BS01 dna ? GO:0003677 ... P35250 38669181
    876571 8un0:B (3.0) BS02 dna ? GO:0003677 ... P35250 38669181
    876572 8un0:B (3.0) BS03 AGS ? GO:0003677 ... P35250 38669181
    876573 8un0:B (3.0) BS04 AGS ? GO:0003677 ... P35250 38669181
    876574 8un0:C (3.0) BS01 dna ? GO:0003677 ... P40937 38669181
    876575 8un0:C (3.0) BS02 AGS ? GO:0003677 ... P40937 38669181
    876576 8un0:C (3.0) BS03 AGS ? GO:0003677 ... P40937 38669181
    876577 8un0:D (3.0) BS01 dna ? GO:0003677 ... P35249 38669181
    876578 8un0:D (3.0) BS02 AGS ? GO:0003677 ... P35249 38669181
    876579 8un0:D (3.0) BS03 MG ? GO:0003677 ... P35249 38669181
    876580 8un0:D (3.0) BS04 AGS ? GO:0003677 ... P35249 38669181
    876581 8un0:E (3.0) BS01 dna ? GO:0000731 ... P40938 38669181
    876582 8un0:E (3.0) BS02 AGS ? GO:0000731 ... P40938 38669181
    876583 8un0:E (3.0) BS03 ADP ? GO:0000731 ... P40938 38669181
    876584 8un3:A (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    876585 8un3:A (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876586 8un3:B (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    876587 8un3:B (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876588 8un3:B (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    876589 8un3:B (2.07) BS04 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    876590 8un3:C (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    876591 8un3:C (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876592 8un3:D (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    876593 8un3:D (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876594 8un3:D (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    876595 8un4:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876596 8un4:A (1.57) BS02 XV3 3.6.5.2 GO:0003924 ... P01116 38229748
    876597 8un5:A (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876598 8un5:A (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    876599 8un5:B (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    876600 8un5:B (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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