Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4360 4361 4362 4363 4364 4365 4366 4367 4368 4369 4370 4371 4372 4373 4374 4375 4376 4377 4378 4379 4380 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    873801 8u8r:C (2.86) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873802 8u8r:C (2.86) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873803 8u8s:A (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873804 8u8s:A (2.63) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873805 8u8s:A (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873806 8u8s:A (2.63) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873807 8u8s:A (2.63) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873808 8u8s:A (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873809 8u8s:A (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873810 8u8s:A (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873811 8u8s:A (2.63) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    873812 8u8s:A (2.63) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873813 8u8s:B (2.63) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873814 8u8s:B (2.63) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873815 8u8s:B (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873816 8u8s:B (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873817 8u8s:B (2.63) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873818 8u8s:B (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873819 8u8s:B (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873820 8u8s:B (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873821 8u8s:B (2.63) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873822 8u8s:B (2.63) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    873823 8u8s:C (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873824 8u8s:C (2.63) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    873825 8u8s:C (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873826 8u8s:C (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873827 8u8s:C (2.63) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    873828 8u8s:C (2.63) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873829 8u8s:C (2.63) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873830 8u8s:C (2.63) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873831 8u8s:C (2.63) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873832 8u8t:A (2.9) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873833 8u8t:A (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873834 8u8t:A (2.9) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    873835 8u8t:A (2.9) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873836 8u8t:A (2.9) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873837 8u8t:A (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873838 8u8t:A (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873839 8u8t:A (2.9) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873840 8u8t:A (2.9) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    873841 8u8t:A (2.9) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873842 8u8t:B (2.9) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873843 8u8t:B (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873844 8u8t:B (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873845 8u8t:B (2.9) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873846 8u8t:B (2.9) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873847 8u8t:B (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873848 8u8t:B (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873849 8u8t:B (2.9) BS08 CU ? GO:0005507 ... Q9XAL8 37926680
    873850 8u8t:C (2.9) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873851 8u8t:C (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873852 8u8t:C (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873853 8u8t:C (2.9) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873854 8u8t:C (2.9) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    873855 8u8t:C (2.9) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873856 8u8t:C (2.9) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873857 8u8t:C (2.9) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873858 8u8t:C (2.9) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873859 8u8t:C (2.9) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873860 8u8u:A (2.9) BS01 dna N/A N/A Q96QE5 39164235
    873861 8u8u:B (2.9) BS01 dna N/A N/A Q96QE5 39164235
    873862 8u8u:E (2.9) BS01 rna N/A N/A O00411 39164235
    873863 8u8u:E (2.9) BS02 dna N/A N/A O00411 39164235
    873864 8u8u:E (2.9) BS03 APC N/A N/A O00411 39164235
    873865 8u8v:A (2.74) BS01 dna N/A N/A Q96QE5 39164235
    873866 8u8v:B (2.74) BS01 dna N/A N/A Q96QE5 39164235
    873867 8u8v:E (2.74) BS01 rna N/A N/A O00411 39164235
    873868 8u8v:E (2.74) BS02 dna N/A N/A O00411 39164235
    873869 8u8v:E (2.74) BS03 APC N/A N/A O00411 39164235
    873870 8u8v:E (2.74) BS04 MG N/A N/A O00411 39164235
    873871 8u8w:A (1.8) BS01 PYR 4.1.3.3 GO:0005737 ... A0A0H3FJT8 N/A
    873872 8u8x:A (1.69) BS01 W9N 2.7.10.1 N/A P04626 38820338
    873873 8u8y:A (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873874 8u8y:A (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873875 8u8y:B (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873876 8u8y:B (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873877 8u8y:C (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873878 8u8y:C (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873879 8u8y:D (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873880 8u8y:D (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873881 8u8y:E (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873882 8u8y:E (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873883 8u8y:F (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873884 8u8y:F (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873885 8u8y:G (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873886 8u8y:G (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873887 8u8y:H (2.1) BS01 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873888 8u8y:H (2.1) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873889 8u8z:A (3.25) BS01 LBV N/A N/A Q885D3 39127720
    873890 8u8z:B (3.25) BS01 LBV N/A N/A Q885D3 39127720
    873891 8u94:A (1.4) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    873892 8u96:A (1.5) BS01 ATP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    873893 8u97:A (1.5) BS01 ANP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    873894 8u98:A (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873895 8u98:A (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873896 8u98:A (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873897 8u98:B (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873898 8u98:B (1.4) BS02 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873899 8u98:B (1.4) BS03 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873900 8u98:C (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873901 8u98:C (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873902 8u98:C (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873903 8u98:D (1.4) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873904 8u98:D (1.4) BS02 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873905 8u98:D (1.4) BS03 GLY 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873906 8u99:A (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873907 8u99:A (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873908 8u99:B (1.8) BS01 PLP 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873909 8u99:B (1.8) BS02 SER 4.4.1.8 GO:0006520 ... A0A0H3FMF8 N/A
    873910 8u9a:A (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    873911 8u9a:A (1.5) BS02 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    873912 8u9a:B (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    873913 8u9e:B (3.02) BS01 PO4 N/A GO:0006520 ... A0A0D1HGG1 38782204
    873914 8u9f:A (1.08) BS01 MG ? GO:0004553 ... Q8A889 38879612
    873915 8u9g:A (2.87) BS01 peptide ? N/A A0A140T913 38113889
    873916 8u9g:D (2.87) BS01 peptide ? N/A A0A140T913 38113889
    873917 8u9h:A (1.7) BS01 VZB N/A N/A P0DTD1 N/A
    873918 8u9j:A (2.02) BS01 FE N/A GO:0005506 ... Q96SZ5 38941563
    873919 8u9j:B (2.02) BS01 FE N/A GO:0005506 ... Q96SZ5 38941563
    873920 8u9k:A (1.85) BS01 W0B N/A N/A P0DTD1 N/A
    873921 8u9m:A (1.85) BS01 VZT N/A N/A P0DTD1 N/A
    873922 8u9n:A (1.7) BS01 W0L N/A N/A P0DTD1 N/A
    873923 8u9o:B (-1.00) BS01 peptide ? N/A A3DC20 38597224
    873924 8u9r:A (3.34) BS01 rna N/A N/A P04050 39190355
    873925 8u9r:A (3.34) BS02 dna N/A N/A P04050 39190355
    873926 8u9r:A (3.34) BS03 ZN N/A N/A P04050 39190355
    873927 8u9r:A (3.34) BS04 MG N/A N/A P04050 39190355
    873928 8u9r:A (3.34) BS05 MG N/A N/A P04050 39190355
    873929 8u9r:A (3.34) BS06 ATP N/A N/A P04050 39190355
    873930 8u9r:B (3.34) BS01 rna N/A N/A N/A 39190355
    873931 8u9r:B (3.34) BS02 dna N/A N/A N/A 39190355
    873932 8u9r:B (3.34) BS03 ATP N/A N/A N/A 39190355
    873933 8u9r:B (3.34) BS04 ZN N/A N/A N/A 39190355
    873934 8u9r:C (3.34) BS01 ZN N/A N/A N/A 39190355
    873935 8u9r:I (3.34) BS01 ZN N/A N/A N/A 39190355
    873936 8u9r:I (3.34) BS02 ZN N/A N/A N/A 39190355
    873937 8u9r:J (3.34) BS01 ZN N/A N/A N/A 39190355
    873938 8u9r:L (3.34) BS01 ZN N/A N/A N/A 39190355
    873939 8u9t:A (1.65) BS01 W1L N/A N/A P0DTD1 N/A
    873940 8u9u:A (1.85) BS01 W0W N/A N/A P0DTD1 N/A
    873941 8u9v:A (1.65) BS01 W1C N/A N/A P0DTD1 N/A
    873942 8u9w:A (2.1) BS01 W1U N/A N/A P0DTD1 N/A
    873943 8u9x:A (3.05) BS01 rna N/A N/A P04050 39190355
    873944 8u9x:A (3.05) BS02 dna N/A N/A P04050 39190355
    873945 8u9x:A (3.05) BS03 ZN N/A N/A P04050 39190355
    873946 8u9x:A (3.05) BS04 ZN N/A N/A P04050 39190355
    873947 8u9x:A (3.05) BS05 MN N/A N/A P04050 39190355
    873948 8u9x:A (3.05) BS06 MN N/A N/A P04050 39190355
    873949 8u9x:A (3.05) BS07 ATP N/A N/A P04050 39190355
    873950 8u9x:B (3.05) BS01 rna N/A N/A N/A 39190355
    873951 8u9x:B (3.05) BS02 dna N/A N/A N/A 39190355
    873952 8u9x:B (3.05) BS03 ATP N/A N/A N/A 39190355
    873953 8u9x:B (3.05) BS04 ZN N/A N/A N/A 39190355
    873954 8u9x:C (3.05) BS01 ZN N/A N/A N/A 39190355
    873955 8u9x:I (3.05) BS01 ZN N/A N/A N/A 39190355
    873956 8u9x:I (3.05) BS02 ZN N/A N/A N/A 39190355
    873957 8u9x:J (3.05) BS01 ZN N/A N/A N/A 39190355
    873958 8u9x:L (3.05) BS01 ZN N/A N/A N/A 39190355
    873959 8ua4:R (3.58) BS01 CA N/A N/A P98155 39095394
    873960 8ua8:R (3.7) BS01 CA N/A N/A P98155 N/A
    873961 8uab:A (1.781) BS01 W28 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38181791
    873962 8uac:A (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    873963 8uac:B (1.4) BS01 W28 3.4.22.15 GO:0006508 ... P07711 38181791
    873964 8uae:A (3.25) BS01 AR6 N/A N/A N/A 38096827
    873965 8uae:B (3.25) BS01 AR6 N/A N/A N/A 38096827
    873966 8uae:C (3.25) BS01 AR6 N/A N/A N/A 38096827
    873967 8uae:D (3.25) BS01 AR6 N/A N/A N/A 38096827
    873968 8uae:E (3.25) BS01 AR6 N/A N/A N/A 38096827
    873969 8uae:F (3.25) BS01 AR6 N/A N/A N/A 38096827
    873970 8uae:G (3.25) BS01 AR6 N/A N/A N/A 38096827
    873971 8uae:H (3.25) BS01 AR6 N/A N/A N/A 38096827
    873972 8uae:I (3.25) BS01 AR6 N/A N/A N/A 38096827
    873973 8uae:J (3.25) BS01 AR6 N/A N/A N/A 38096827
    873974 8uae:K (3.25) BS01 AR6 N/A N/A N/A 38096827
    873975 8uae:L (3.25) BS01 AR6 N/A N/A N/A 38096827
    873976 8uae:M (3.25) BS01 AGS N/A N/A N/A 38096827
    873977 8uae:M (3.25) BS02 MG N/A N/A N/A 38096827
    873978 8uae:N (3.25) BS01 AGS N/A N/A N/A 38096827
    873979 8uae:N (3.25) BS02 MG N/A N/A N/A 38096827
    873980 8uae:O (3.25) BS01 AGS N/A N/A N/A 38096827
    873981 8uae:P (3.25) BS01 AGS N/A N/A N/A 38096827
    873982 8uae:Q (3.25) BS01 AGS N/A N/A N/A 38096827
    873983 8uaf:A (3.18) BS01 AR6 N/A N/A N/A 38096827
    873984 8uaf:B (3.18) BS01 NAD N/A N/A N/A 38096827
    873985 8uaf:C (3.18) BS01 NAD N/A N/A N/A 38096827
    873986 8uaf:D (3.18) BS01 AR6 N/A N/A N/A 38096827
    873987 8uaf:E (3.18) BS01 NAD N/A N/A N/A 38096827
    873988 8uaf:F (3.18) BS01 NAD N/A N/A N/A 38096827
    873989 8uaf:G (3.18) BS01 NAD N/A N/A N/A 38096827
    873990 8uaf:H (3.18) BS01 NAD N/A N/A N/A 38096827
    873991 8uaf:I (3.18) BS01 AR6 N/A N/A N/A 38096827
    873992 8uaf:J (3.18) BS01 NAD N/A N/A N/A 38096827
    873993 8uaf:K (3.18) BS01 AR6 N/A N/A N/A 38096827
    873994 8uaf:L (3.18) BS01 NAD N/A N/A N/A 38096827
    873995 8uaf:M (3.18) BS01 ADP N/A N/A N/A 38096827
    873996 8uaf:M (3.18) BS02 MG N/A N/A N/A 38096827
    873997 8uaf:N (3.18) BS01 ADP N/A N/A N/A 38096827
    873998 8uaf:O (3.18) BS01 ADP N/A N/A N/A 38096827
    873999 8uaf:P (3.18) BS01 MG N/A N/A N/A 38096827
    874000 8uaf:P (3.18) BS02 ADP N/A N/A N/A 38096827
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218