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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    873601 8u7v:E (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873602 8u7v:E (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873603 8u7v:E (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873604 8u7v:E (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873605 8u7v:E (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873606 8u7v:F (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873607 8u7v:F (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873608 8u7v:F (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873609 8u7v:F (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873610 8u7v:F (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873611 8u7v:G (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873612 8u7v:G (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873613 8u7v:G (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873614 8u7v:G (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873615 8u7v:G (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873616 8u7v:H (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873617 8u7v:H (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873618 8u7v:H (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873619 8u7v:H (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873620 8u7v:H (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    873621 8u7w:A (2.05) BS01 W8I 3.1.3.48 GO:0004725 ... Q06124 38116446
    873622 8u7w:B (2.05) BS01 W8I 3.1.3.48 GO:0004725 ... Q06124 38116446
    873623 8u7x:A (2.06) BS01 WAB 3.1.3.48 GO:0004725 ... Q06124 38116446
    873624 8u7x:B (2.06) BS01 WAB 3.1.3.48 GO:0004725 ... Q06124 38116446
    873625 8u7y:A (4.06) BS01 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873626 8u7y:A (4.06) BS02 NAP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873627 8u7y:A (4.06) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873628 8u7y:A (4.06) BS04 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873629 8u7y:B (4.06) BS01 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873630 8u7y:B (4.06) BS02 NAP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873631 8u7y:B (4.06) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873632 8u7y:B (4.06) BS04 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873633 8u85:A (3.2) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873634 8u85:A (3.2) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873635 8u85:A (3.2) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873636 8u85:A (3.2) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873637 8u85:A (3.2) BS05 ZN 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873638 8u85:C (3.2) BS01 ZN 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873639 8u85:C (3.2) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873640 8u85:C (3.2) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873641 8u85:C (3.2) BS04 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873642 8u85:C (3.2) BS05 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873643 8u86:A (3.3) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873644 8u86:A (3.3) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873645 8u86:A (3.3) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873646 8u86:A (3.3) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873647 8u86:C (3.3) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873648 8u86:C (3.3) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873649 8u86:C (3.3) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873650 8u86:C (3.3) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873651 8u87:A (3.86) BS01 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873652 8u87:A (3.86) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873653 8u87:A (3.86) BS03 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873654 8u87:A (3.86) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873655 8u87:A (3.86) BS05 ZN 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873656 8u87:C (3.86) BS01 ZN 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873657 8u87:C (3.86) BS02 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873658 8u87:C (3.86) BS03 HEB 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873659 8u87:C (3.86) BS04 NDP 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873660 8u87:C (3.86) BS05 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    873661 8u89:C (3.3) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    873662 8u89:C (3.3) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    873663 8u8a:B (3.4) BS01 0LI 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873664 8u8a:B (3.4) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873665 8u8a:C (3.4) BS01 0LI 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873666 8u8a:C (3.4) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873667 8u8b:A (3.7) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873668 8u8b:A (3.7) BS02 919 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873669 8u8b:B (3.7) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873670 8u8b:B (3.7) BS02 919 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38263358
    873671 8u8j:A (2.1) BS01 WAL 2.7.11.24 GO:0000165 ... P28482 38537148
    873672 8u8k:A (2.1) BS01 W8U 2.7.11.24 GO:0000165 ... P28482 38537148
    873673 8u8l:A (2.2) BS01 dna ? N/A Q22429 38588418
    873674 8u8l:A (2.2) BS02 dna ? N/A Q22429 38588418
    873675 8u8l:B (2.2) BS01 dna ? N/A Q22429 38588418
    873676 8u8l:B (2.2) BS02 dna ? N/A Q22429 38588418
    873677 8u8m:A (2.7) BS01 CO ? N/A O62329 38588418
    873678 8u8m:B (2.7) BS01 CO ? N/A O62329 38588418
    873679 8u8m:C (2.7) BS01 CO ? N/A O62329 38588418
    873680 8u8m:D (2.7) BS01 CO ? N/A O62329 38588418
    873681 8u8o:A (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873682 8u8o:A (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873683 8u8o:A (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873684 8u8o:A (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873685 8u8o:B (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873686 8u8o:B (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873687 8u8o:B (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873688 8u8o:B (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873689 8u8o:C (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873690 8u8o:C (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873691 8u8o:C (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873692 8u8o:C (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873693 8u8o:D (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873694 8u8o:D (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873695 8u8o:D (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873696 8u8o:D (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873697 8u8o:E (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873698 8u8o:E (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873699 8u8o:E (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873700 8u8o:E (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873701 8u8o:F (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873702 8u8o:F (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873703 8u8o:F (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873704 8u8o:F (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873705 8u8o:G (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873706 8u8o:G (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873707 8u8o:G (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873708 8u8o:G (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873709 8u8o:H (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873710 8u8o:H (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    873711 8u8o:H (2.4) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    873712 8u8o:H (2.4) BS04 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    873713 8u8p:A (2.2) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873714 8u8p:A (2.2) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873715 8u8p:A (2.2) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873716 8u8p:A (2.2) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873717 8u8p:A (2.2) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873718 8u8p:A (2.2) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873719 8u8p:A (2.2) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873720 8u8p:A (2.2) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873721 8u8p:A (2.2) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    873722 8u8p:A (2.2) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873723 8u8p:A (2.2) BS11 GLY ? GO:0005507 ... Q9XAL8 37926680
    873724 8u8p:B (2.2) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873725 8u8p:B (2.2) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873726 8u8p:B (2.2) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873727 8u8p:B (2.2) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873728 8u8p:B (2.2) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873729 8u8p:B (2.2) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873730 8u8p:B (2.2) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873731 8u8p:B (2.2) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873732 8u8p:B (2.2) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873733 8u8p:B (2.2) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    873734 8u8p:B (2.2) BS11 GLY ? GO:0005507 ... Q9XAL8 37926680
    873735 8u8p:C (2.2) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873736 8u8p:C (2.2) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873737 8u8p:C (2.2) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    873738 8u8p:C (2.2) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873739 8u8p:C (2.2) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    873740 8u8p:C (2.2) BS06 CU ? GO:0005507 ... Q9XAL8 37926680
    873741 8u8p:C (2.2) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873742 8u8p:C (2.2) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873743 8u8p:C (2.2) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873744 8u8p:C (2.2) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873745 8u8p:C (2.2) BS11 GLY ? GO:0005507 ... Q9XAL8 37926680
    873746 8u8q:A (2.7) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873747 8u8q:A (2.7) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873748 8u8q:A (2.7) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873749 8u8q:A (2.7) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873750 8u8q:A (2.7) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873751 8u8q:A (2.7) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873752 8u8q:A (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873753 8u8q:A (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873754 8u8q:A (2.7) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    873755 8u8q:A (2.7) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873756 8u8q:B (2.7) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873757 8u8q:B (2.7) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873758 8u8q:B (2.7) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873759 8u8q:B (2.7) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873760 8u8q:B (2.7) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873761 8u8q:B (2.7) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873762 8u8q:B (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873763 8u8q:B (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873764 8u8q:B (2.7) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873765 8u8q:B (2.7) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    873766 8u8q:C (2.7) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873767 8u8q:C (2.7) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    873768 8u8q:C (2.7) BS03 GLY ? GO:0005507 ... Q9XAL8 37926680
    873769 8u8q:C (2.7) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873770 8u8q:C (2.7) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    873771 8u8q:C (2.7) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873772 8u8q:C (2.7) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873773 8u8q:C (2.7) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873774 8u8q:C (2.7) BS09 GLY ? GO:0005507 ... Q9XAL8 37926680
    873775 8u8r:A (2.86) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873776 8u8r:A (2.86) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873777 8u8r:A (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873778 8u8r:A (2.86) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873779 8u8r:A (2.86) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873780 8u8r:A (2.86) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873781 8u8r:A (2.86) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873782 8u8r:A (2.86) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873783 8u8r:A (2.86) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    873784 8u8r:A (2.86) BS10 GLY ? GO:0005507 ... Q9XAL8 37926680
    873785 8u8r:B (2.86) BS01 GLY ? GO:0005507 ... Q9XAL8 37926680
    873786 8u8r:B (2.86) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    873787 8u8r:B (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873788 8u8r:B (2.86) BS04 GLY ? GO:0005507 ... Q9XAL8 37926680
    873789 8u8r:B (2.86) BS05 GLY ? GO:0005507 ... Q9XAL8 37926680
    873790 8u8r:B (2.86) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873791 8u8r:B (2.86) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    873792 8u8r:B (2.86) BS08 GLY ? GO:0005507 ... Q9XAL8 37926680
    873793 8u8r:B (2.86) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    873794 8u8r:C (2.86) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    873795 8u8r:C (2.86) BS02 GLY ? GO:0005507 ... Q9XAL8 37926680
    873796 8u8r:C (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    873797 8u8r:C (2.86) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    873798 8u8r:C (2.86) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    873799 8u8r:C (2.86) BS06 GLY ? GO:0005507 ... Q9XAL8 37926680
    873800 8u8r:C (2.86) BS07 GLY ? GO:0005507 ... Q9XAL8 37926680
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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