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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    871801 8tow:b (2.14) BS16 CLA N/A GO:0009523 ... P05429 38879008
    871802 8tow:c (2.14) BS01 OEX N/A GO:0005737 ... P09193 38879008
    871803 8tow:c (2.14) BS02 CLA N/A GO:0005737 ... P09193 38879008
    871804 8tow:c (2.14) BS03 CLA N/A GO:0005737 ... P09193 38879008
    871805 8tow:c (2.14) BS04 CLA N/A GO:0005737 ... P09193 38879008
    871806 8tow:c (2.14) BS05 CLA N/A GO:0005737 ... P09193 38879008
    871807 8tow:c (2.14) BS06 CLA N/A GO:0005737 ... P09193 38879008
    871808 8tow:c (2.14) BS07 CLA N/A GO:0005737 ... P09193 38879008
    871809 8tow:c (2.14) BS08 CLA N/A GO:0005737 ... P09193 38879008
    871810 8tow:c (2.14) BS09 CLA N/A GO:0005737 ... P09193 38879008
    871811 8tow:c (2.14) BS10 CLA N/A GO:0005737 ... P09193 38879008
    871812 8tow:c (2.14) BS11 CLA N/A GO:0005737 ... P09193 38879008
    871813 8tow:c (2.14) BS12 CLA N/A GO:0005737 ... P09193 38879008
    871814 8tow:c (2.14) BS13 CLA N/A GO:0005737 ... P09193 38879008
    871815 8tow:c (2.14) BS14 CLA N/A GO:0005737 ... P09193 38879008
    871816 8tow:d (2.14) BS01 FE2 N/A GO:0005506 ... P09192 38879008
    871817 8tow:d (2.14) BS02 CLA N/A GO:0005506 ... P09192 38879008
    871818 8tow:d (2.14) BS03 PHO N/A GO:0005506 ... P09192 38879008
    871819 8tow:d (2.14) BS04 BCT N/A GO:0005506 ... P09192 38879008
    871820 8tow:d (2.14) BS05 CLA N/A GO:0005506 ... P09192 38879008
    871821 8tow:d (2.14) BS06 CLA N/A GO:0005506 ... P09192 38879008
    871822 8tow:d (2.14) BS07 PHO N/A GO:0005506 ... P09192 38879008
    871823 8tow:d (2.14) BS08 CLA N/A GO:0005506 ... P09192 38879008
    871824 8tow:d (2.14) BS09 CLA N/A GO:0005506 ... P09192 38879008
    871825 8tow:e (2.14) BS01 HEM N/A GO:0005506 ... P09190 38879008
    871826 8tow:f (2.14) BS01 HEM N/A GO:0005506 ... P09191 38879008
    871827 8tow:h (2.14) BS01 CLA N/A GO:0009523 ... P14835 38879008
    871828 8tow:h (2.14) BS02 CLA N/A GO:0009523 ... P14835 38879008
    871829 8tow:h (2.14) BS03 CLA N/A GO:0009523 ... P14835 38879008
    871830 8tow:h (2.14) BS04 CLA N/A GO:0009523 ... P14835 38879008
    871831 8tow:h (2.14) BS05 RRX N/A GO:0009523 ... P14835 38879008
    871832 8tow:i (2.14) BS01 CLA N/A GO:0005737 ... Q54697 38879008
    871833 8tow:i (2.14) BS02 CLA N/A GO:0005737 ... Q54697 38879008
    871834 8tow:k (2.14) BS01 CLA N/A GO:0005737 ... P15819 38879008
    871835 8tow:k (2.14) BS02 CLA N/A GO:0005737 ... P15819 38879008
    871836 8tow:k (2.14) BS03 CA N/A GO:0005737 ... P15819 38879008
    871837 8tow:m (2.14) BS01 CLA N/A GO:0005737 ... P72701 38879008
    871838 8tow:u (2.14) BS01 CA N/A N/A Q55332 38879008
    871839 8tow:v (2.14) BS01 HEM N/A N/A Q55013 38879008
    871840 8tow:v (2.14) BS02 CA N/A N/A Q55013 38879008
    871841 8tow:x (2.14) BS01 CLA N/A GO:0009523 ... P72575 38879008
    871842 8tow:z (2.14) BS01 CLA N/A GO:0009523 ... P73528 38879008
    871843 8tp1:A (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871844 8tp1:A (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871845 8tp1:B (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871846 8tp1:B (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871847 8tp1:B (3.02) BS03 MG ? GO:0005524 ... Q9CZP5 38821922
    871848 8tp1:C (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871849 8tp1:C (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871850 8tp1:C (3.02) BS03 MG ? GO:0005524 ... Q9CZP5 38821922
    871851 8tp1:D (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871852 8tp1:D (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871853 8tp1:D (3.02) BS03 MG ? GO:0005524 ... Q9CZP5 38821922
    871854 8tp1:E (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871855 8tp1:E (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871856 8tp1:E (3.02) BS03 MG ? GO:0005524 ... Q9CZP5 38821922
    871857 8tp1:F (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871858 8tp1:F (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871859 8tp1:F (3.02) BS03 MG ? GO:0005524 ... Q9CZP5 38821922
    871860 8tp1:G (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871861 8tp1:G (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871862 8tp1:G (3.02) BS03 MG ? GO:0005524 ... Q9CZP5 38821922
    871863 8tp8:A (2.74) BS01 dna ? N/A A0A0H3C5Q6 38142455
    871864 8tp8:A (2.74) BS02 dna ? N/A A0A0H3C5Q6 38142455
    871865 8tp8:A (2.74) BS03 dna ? N/A A0A0H3C5Q6 38142455
    871866 8tp8:B (2.74) BS01 dna ? N/A A0A0H3C5Q6 38142455
    871867 8tp8:B (2.74) BS02 dna ? N/A A0A0H3C5Q6 38142455
    871868 8tp8:B (2.74) BS03 dna ? N/A A0A0H3C5Q6 38142455
    871869 8tp8:C (2.74) BS01 dna ? N/A A0A0H3C5Q6 38142455
    871870 8tp8:C (2.74) BS02 dna ? N/A A0A0H3C5Q6 38142455
    871871 8tp8:C (2.74) BS03 dna ? N/A A0A0H3C5Q6 38142455
    871872 8tp8:D (2.74) BS01 dna ? N/A A0A0H3C5Q6 38142455
    871873 8tp8:D (2.74) BS02 dna ? N/A A0A0H3C5Q6 38142455
    871874 8tp8:D (2.74) BS03 dna ? N/A A0A0H3C5Q6 38142455
    871875 8tpb:A (1.88) BS01 JVX 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871876 8tpb:B (1.88) BS01 JVX 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871877 8tpc:A (1.73) BS01 JJC 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871878 8tpd:A (1.68) BS01 JJO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871879 8tpe:A (1.61) BS01 JK0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871880 8tpe:B (1.61) BS01 JK0 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871881 8tpf:A (1.95) BS01 JWI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871882 8tpg:A (1.692) BS01 JKL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871883 8tph:A (1.52) BS01 JKL 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871884 8tpi:A (1.98) BS01 JWO 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38192109
    871885 8tpj:A (2.1) BS01 CYC 4.-.-.- GO:0005515 ... Q55544 38578996
    871886 8tpj:A (2.1) BS02 CYC 4.-.-.- GO:0005515 ... Q55544 38578996
    871887 8tpj:A (2.1) BS03 CYC 4.-.-.- GO:0005515 ... Q55544 38578996
    871888 8tpj:A (2.1) BS04 CYC 4.-.-.- GO:0005515 ... Q55544 38578996
    871889 8tpj:B (2.1) BS01 45D ? GO:0005515 ... P74102 38578996
    871890 8tpj:C (2.1) BS01 CYC ? GO:0009579 ... Q01950 38578996
    871891 8tpj:C (2.1) BS02 CYC ? GO:0009579 ... Q01950 38578996
    871892 8tpj:D (2.1) BS01 45D ? GO:0009579 ... Q01951 38578996
    871893 8tpj:D (2.1) BS02 CYC ? GO:0009579 ... Q01951 38578996
    871894 8tpj:E (2.1) BS01 CYC ? GO:0009579 ... Q01952 38578996
    871895 8tpj:E (2.1) BS02 CYC ? GO:0009579 ... Q01952 38578996
    871896 8tpj:F (2.1) BS01 CYC ? GO:0009579 ... Q01951 38578996
    871897 8tpj:G (2.1) BS01 CYC ? GO:0009579 ... Q01952 38578996
    871898 8tpj:G (2.1) BS02 CYC ? GO:0009579 ... Q01952 38578996
    871899 8tpj:H (2.1) BS01 CYC ? GO:0009579 ... Q01951 38578996
    871900 8tpj:I (2.1) BS01 CYC ? GO:0009579 ... Q01952 38578996
    871901 8tpj:I (2.1) BS02 CYC ? GO:0009579 ... Q01952 38578996
    871902 8tpj:J (2.1) BS01 peptide ? GO:0009579 ... Q01951 38578996
    871903 8tpj:J (2.1) BS02 CYC ? GO:0009579 ... Q01951 38578996
    871904 8tpj:K (2.1) BS01 peptide ? GO:0009579 ... Q01952 38578996
    871905 8tpj:K (2.1) BS02 CYC ? GO:0009579 ... Q01952 38578996
    871906 8tpj:K (2.1) BS03 CYC ? GO:0009579 ... Q01952 38578996
    871907 8tpj:L (2.1) BS01 CYC ? GO:0009579 ... Q01951 38578996
    871908 8tpj:M (2.1) BS01 CYC ? GO:0009579 ... Q01952 38578996
    871909 8tpj:M (2.1) BS02 CYC ? GO:0009579 ... Q01952 38578996
    871910 8tpj:N (2.1) BS01 peptide ? GO:0009579 ... Q01951 38578996
    871911 8tpj:N (2.1) BS02 CYC ? GO:0009579 ... Q01951 38578996
    871912 8tpj:O (2.1) BS01 CYC ? GO:0009579 ... Q01952 38578996
    871913 8tpj:O (2.1) BS02 CYC ? GO:0009579 ... Q01952 38578996
    871914 8tpk:A (3.46) BS01 dna ? N/A A0A0H3C5Q6 38142455
    871915 8tpk:A (3.46) BS02 dna ? N/A A0A0H3C5Q6 38142455
    871916 8tpk:A (3.46) BS03 dna ? N/A A0A0H3C5Q6 38142455
    871917 8tpk:B (3.46) BS01 dna ? N/A A0A0H3C5Q6 38142455
    871918 8tpk:B (3.46) BS02 dna ? N/A A0A0H3C5Q6 38142455
    871919 8tpk:B (3.46) BS03 dna ? N/A A0A0H3C5Q6 38142455
    871920 8tpl:A (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871921 8tpl:A (3.46) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871922 8tpl:B (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871923 8tpl:B (3.46) BS02 MG ? GO:0005524 ... Q9CZP5 38821922
    871924 8tpl:C (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871925 8tpl:C (3.46) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871926 8tpl:D (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871927 8tpl:E (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871928 8tpl:E (3.46) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    871929 8tpl:F (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871930 8tpl:F (3.46) BS02 MG ? GO:0005524 ... Q9CZP5 38821922
    871931 8tpl:G (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    871932 8tpl:G (3.46) BS02 MG ? GO:0005524 ... Q9CZP5 38821922
    871933 8tpm:A (2.93) BS01 PGW ? GO:0005254 ... C7Z7K1 38684930
    871934 8tpm:A (2.93) BS02 PGW ? GO:0005254 ... C7Z7K1 38684930
    871935 8tpm:A (2.93) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871936 8tpm:A (2.93) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871937 8tpm:A (2.93) BS05 PGW ? GO:0005254 ... C7Z7K1 38684930
    871938 8tpm:A (2.93) BS06 PGW ? GO:0005254 ... C7Z7K1 38684930
    871939 8tpm:A (2.93) BS07 PGW ? GO:0005254 ... C7Z7K1 38684930
    871940 8tpm:A (2.93) BS08 PGW ? GO:0005254 ... C7Z7K1 38684930
    871941 8tpm:B (2.93) BS01 PGW ? GO:0005254 ... C7Z7K1 38684930
    871942 8tpm:B (2.93) BS02 PGW ? GO:0005254 ... C7Z7K1 38684930
    871943 8tpm:B (2.93) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871944 8tpm:B (2.93) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871945 8tpm:B (2.93) BS05 PGW ? GO:0005254 ... C7Z7K1 38684930
    871946 8tpm:B (2.93) BS06 PGW ? GO:0005254 ... C7Z7K1 38684930
    871947 8tpm:B (2.93) BS07 PGW ? GO:0005254 ... C7Z7K1 38684930
    871948 8tpn:A (4.07) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871949 8tpn:A (4.07) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871950 8tpn:B (4.07) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871951 8tpn:B (4.07) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871952 8tpo:A (3.59) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871953 8tpo:A (3.59) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871954 8tpo:A (3.59) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871955 8tpo:B (3.59) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871956 8tpo:B (3.59) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871957 8tpo:B (3.59) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871958 8tpp:A (3.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871959 8tpp:A (3.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871960 8tpp:B (3.64) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871961 8tpp:B (3.64) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871962 8tpq:A (3.35) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871963 8tpq:A (3.35) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871964 8tpq:A (3.35) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871965 8tpq:B (3.35) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871966 8tpq:B (3.35) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871967 8tpq:B (3.35) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871968 8tpr:A (2.85) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871969 8tpr:A (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871970 8tpr:A (2.85) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871971 8tpr:A (2.85) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871972 8tpr:B (2.85) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871973 8tpr:B (2.85) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871974 8tpr:B (2.85) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871975 8tpr:B (2.85) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871976 8tps:A (2.97) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871977 8tps:A (2.97) BS02 PGW ? GO:0005254 ... C7Z7K1 38684930
    871978 8tps:A (2.97) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871979 8tps:A (2.97) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871980 8tps:B (2.97) BS01 PGW ? GO:0005254 ... C7Z7K1 38684930
    871981 8tps:B (2.97) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871982 8tps:B (2.97) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871983 8tps:B (2.97) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871984 8tpt:A (3.01) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871985 8tpt:A (3.01) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871986 8tpt:A (3.01) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871987 8tpt:A (3.01) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871988 8tpt:B (3.01) BS01 CA ? GO:0005254 ... C7Z7K1 38684930
    871989 8tpt:B (3.01) BS02 CA ? GO:0005254 ... C7Z7K1 38684930
    871990 8tpt:B (3.01) BS03 PGW ? GO:0005254 ... C7Z7K1 38684930
    871991 8tpt:B (3.01) BS04 PGW ? GO:0005254 ... C7Z7K1 38684930
    871992 8tpu:A0 (4.1) BS01 rna N/A N/A Q8IEM3 N/A
    871993 8tpu:A1 (4.1) BS01 rna N/A N/A Q8IKM5 N/A
    871994 8tpu:A2 (4.1) BS01 rna N/A N/A N/A N/A
    871995 8tpu:A3 (4.1) BS01 rna N/A N/A Q8IIB4 N/A
    871996 8tpu:A3 (4.1) BS02 rna N/A N/A Q8IIB4 N/A
    871997 8tpu:A4 (4.1) BS01 rna N/A N/A C6S3J6 N/A
    871998 8tpu:A5 (4.1) BS01 rna N/A N/A O97250 N/A
    871999 8tpu:A5 (4.1) BS02 rna N/A N/A O97250 N/A
    872000 8tpu:A6 (4.1) BS01 rna N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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