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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    865401 8si7:B (2.59) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865402 8si7:B (2.59) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865403 8si7:C (2.59) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865404 8si7:C (2.59) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865405 8si7:C (2.59) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865406 8si7:C (2.59) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865407 8si7:C (2.59) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865408 8si7:D (2.59) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865409 8si7:D (2.59) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865410 8si7:D (2.59) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865411 8si7:D (2.59) BS04 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865412 8si7:D (2.59) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865413 8si8:A (2.99) BS01 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865414 8si8:A (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865415 8si8:A (2.99) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865416 8si8:A (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865417 8si8:A (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865418 8si8:B (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865419 8si8:B (2.99) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865420 8si8:B (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865421 8si8:B (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865422 8si8:B (2.99) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865423 8si8:C (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865424 8si8:C (2.99) BS02 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865425 8si8:C (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865426 8si8:C (2.99) BS04 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865427 8si8:C (2.99) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865428 8si8:D (2.99) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865429 8si8:D (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865430 8si8:D (2.99) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865431 8si8:D (2.99) BS04 3FD 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865432 8si8:D (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865433 8si9:A (2.98) BS01 Y4B ? GO:0004888 ... P47870 37607940
    865434 8si9:A (2.98) BS02 ABU ? GO:0004888 ... P47870 37607940
    865435 8si9:B (2.98) BS01 Y4B ? GO:0004888 ... P14867 37607940
    865436 8si9:B (2.98) BS02 ABU ? GO:0004888 ... P14867 37607940
    865437 8si9:C (2.98) BS01 ABU ? GO:0004888 ... P47870 37607940
    865438 8si9:C (2.98) BS02 Y4B ? GO:0004888 ... P47870 37607940
    865439 8si9:D (2.98) BS01 ABU ? GO:0004888 ... P14867 37607940
    865440 8si9:D (2.98) BS02 Y4B ? GO:0004888 ... P14867 37607940
    865441 8si9:E (2.98) BS01 MAN ? GO:0004888 ... P18507 37607940
    865442 8sia:A (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865443 8sia:A (2.91) BS02 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865444 8sia:A (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865445 8sia:A (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865446 8sia:B (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865447 8sia:B (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865448 8sia:B (2.91) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865449 8sia:B (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865450 8sia:B (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865451 8sia:C (2.91) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865452 8sia:C (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865453 8sia:C (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865454 8sia:C (2.91) BS04 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865455 8sia:C (2.91) BS05 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865456 8sia:D (2.91) BS01 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865457 8sia:D (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865458 8sia:D (2.91) BS03 DU0 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865459 8sia:D (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865460 8sia:D (2.91) BS05 6RA 2.7.11.1 GO:0005216 ... Q923J1 37156763
    865461 8sic:E (2.76) BS01 ZN ? N/A P03200 N/A
    865462 8sic:E (2.76) BS02 ZN ? N/A P03200 N/A
    865463 8sic:G (2.76) BS01 ZN ? N/A P03200 N/A
    865464 8sic:G (2.76) BS02 ZN ? N/A P03200 N/A
    865465 8sid:A (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    865466 8sid:B (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    865467 8sid:C (2.71) BS01 ABU ? GO:0004888 ... P47870 37607940
    865468 8sid:C (2.71) BS02 Q3G ? GO:0004888 ... P47870 37607940
    865469 8sid:D (2.71) BS01 ABU ? GO:0004888 ... P14867 37607940
    865470 8sid:E (2.71) BS01 MAN ? GO:0004888 ... P18507 37607940
    865471 8sie:C (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    865472 8sie:C (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    865473 8sie:C (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    865474 8sie:C (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    865475 8sie:C (2.7) BS05 LBN ? GO:0005886 ... I3L8V6 38184688
    865476 8sie:C (2.7) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    865477 8sie:C (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    865478 8sie:C (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    865479 8sie:C (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    865480 8sie:D (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    865481 8sie:D (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    865482 8sie:D (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    865483 8sie:D (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    865484 8sie:D (2.7) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    865485 8sie:D (2.7) BS06 LBN ? GO:0005886 ... I3L8V6 38184688
    865486 8sie:D (2.7) BS07 BCT ? GO:0005886 ... I3L8V6 38184688
    865487 8sie:D (2.7) BS08 BCT ? GO:0005886 ... I3L8V6 38184688
    865488 8sie:D (2.7) BS09 AV0 ? GO:0005886 ... I3L8V6 38184688
    865489 8sif:A (1.7) BS01 ZX4 N/A GO:0000287 ... P26281 N/A
    865490 8sig:A (1.78) BS01 GWU 2.1.1.319 GO:0016274 ... Q86X55 N/A
    865491 8sih:A (2.35) BS01 I1K 2.1.1.319 GO:0016274 ... Q86X55 N/A
    865492 8sih:A (2.35) BS02 CA 2.1.1.319 GO:0016274 ... Q86X55 N/A
    865493 8sii:A (1.37) BS01 peptide N/A N/A O95931 N/A
    865494 8sii:A (1.37) BS02 CA N/A N/A O95931 N/A
    865495 8sii:B (1.37) BS01 peptide N/A N/A O95931 N/A
    865496 8sij:A (2.6) BS01 PLP N/A GO:0006520 ... N/A 37633277
    865497 8sij:B (2.6) BS01 K9E N/A GO:0006520 ... N/A 37633277
    865498 8sik:B (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865499 8sik:F (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865500 8sik:H (2.9) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865501 8sim:B (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865502 8sim:B (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    865503 8sim:D (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865504 8sim:D (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    865505 8sim:F (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865506 8sim:F (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    865507 8sim:H (6.2) BS01 CA ? GO:0000086 ... P0DP23 37192161
    865508 8sim:H (6.2) BS02 CA ? GO:0000086 ... P0DP23 37192161
    865509 8sio:A (2.2) BS01 GXF 2.1.1.319 GO:0016274 ... O60678 N/A
    865510 8sio:B (2.2) BS01 GXF 2.1.1.319 GO:0016274 ... O60678 N/A
    865511 8sip:H (1.94) BS01 NOS N/A N/A N/A N/A
    865512 8sip:L (1.94) BS01 NOS N/A N/A N/A N/A
    865513 8siq:N (2.5) BS01 FUC N/A N/A N/A N/A
    865514 8siu:A (1.8) BS01 peptide ? N/A A0A140UHX1 37551430
    865515 8siv:A (1.759) BS01 ZXH 2.7.11.1 GO:0000077 ... O14757 37861679
    865516 8siw:A (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    865517 8siw:B (1.877) BS01 ZXL 2.7.11.1 GO:0000077 ... O14757 37861679
    865518 8six:A (1.55) BS01 ZXP 2.7.11.1 GO:0000077 ... O14757 37861679
    865519 8siy:A (2.9) BS01 peptide ? GO:0000775 ... A0A140UHX1 37551430
    865520 8siy:C (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    865521 8siy:C (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    865522 8siy:D (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    865523 8siy:D (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    865524 8siy:E (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    865525 8siy:E (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    865526 8siy:F (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    865527 8siy:F (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    865528 8siy:G (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    865529 8siy:G (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    865530 8siy:H (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    865531 8siy:H (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    865532 8siy:I (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    865533 8siy:I (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    865534 8siy:J (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    865535 8siy:J (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    865536 8sj0:A (2.55) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865537 8sj0:A (2.55) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865538 8sj0:A (2.55) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865539 8sj0:A (2.55) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    865540 8sj0:A (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    865541 8sj0:A (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865542 8sj0:A (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    865543 8sj0:C (2.55) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865544 8sj0:C (2.55) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865545 8sj0:C (2.55) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865546 8sj0:C (2.55) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    865547 8sj0:C (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    865548 8sj0:C (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865549 8sj0:C (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    865550 8sj1:A (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865551 8sj1:A (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865552 8sj1:A (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865553 8sj1:A (2.81) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    865554 8sj1:A (2.81) BS05 3AT 2.7.7.86 N/A Q8C6L5 38740774
    865555 8sj1:A (2.81) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865556 8sj1:A (2.81) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    865557 8sj1:C (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865558 8sj1:C (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865559 8sj1:C (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865560 8sj1:C (2.81) BS04 3AT 2.7.7.86 N/A Q8C6L5 38740774
    865561 8sj1:C (2.81) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865562 8sj1:C (2.81) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    865563 8sj2:A (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865564 8sj2:A (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865565 8sj2:A (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865566 8sj2:A (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    865567 8sj2:A (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    865568 8sj2:A (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    865569 8sj2:A (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865570 8sj2:C (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    865571 8sj2:C (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    865572 8sj2:C (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    865573 8sj2:C (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    865574 8sj2:C (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    865575 8sj2:C (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    865576 8sj2:C (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    865577 8sj7:A (2.09) BS01 rna ? GO:0003723 ... Q09312 37953271
    865578 8sj8:A (2.5) BS01 ZN 2.7.7.86 N/A Q8N884 38740774
    865579 8sj8:A (2.5) BS02 OKR 2.7.7.86 N/A Q8N884 38740774
    865580 8sjb:A (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    865581 8sjb:A (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    865582 8sjb:A (1.74) BS03 ZN N/A GO:0002523 ... P05109 N/A
    865583 8sjb:B (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    865584 8sjb:B (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    865585 8sjb:C (1.74) BS01 ZN N/A N/A P06702 N/A
    865586 8sjb:C (1.74) BS02 CA N/A N/A P06702 N/A
    865587 8sjb:C (1.74) BS03 CA N/A N/A P06702 N/A
    865588 8sjb:D (1.74) BS01 CA N/A N/A P06702 N/A
    865589 8sjb:D (1.74) BS02 CA N/A N/A P06702 N/A
    865590 8sjc:A (1.87) BS01 CA N/A GO:0002523 ... P05109 N/A
    865591 8sjc:A (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    865592 8sjc:A (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    865593 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 N/A
    865594 8sjc:B (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    865595 8sjc:B (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    865596 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 N/A
    865597 8sjc:C (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    865598 8sjc:C (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    865599 8sjc:D (1.87) BS01 CA N/A GO:0002523 ... P06702 N/A
    865600 8sjc:D (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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