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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    60001 1wog:F (1.8) BS03 16D 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60002 1woi:A (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60003 1woi:A (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60004 1woi:B (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60005 1woi:B (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60006 1woi:C (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60007 1woi:C (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60008 1woi:D (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60009 1woi:D (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60010 1woi:E (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60011 1woi:E (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60012 1woi:F (1.85) BS01 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60013 1woi:F (1.85) BS02 MN 3.5.3.11 GO:0008783 ... Q9RZ04 15355972
    60014 1woj:A (1.8) BS01 PO4 3.1.4.37 GO:0004113 ... P09543 15713463
    60015 1wok:A (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 PDBbind: -logKd/Ki=7.48, IC50=33nM
    BindingDB: IC50=33nM
    60016 1wok:B (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 BindingDB: IC50=33nM
    60017 1wok:C (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 BindingDB: IC50=33nM
    60018 1wok:D (3.0) BS01 CNQ 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 15733846 BindingDB: IC50=33nM
    60019 1woo:A (2.4) BS01 THG 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    60020 1wop:A (2.0) BS01 FFO 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    60021 1wop:A (2.0) BS02 FFO 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    60022 1woq:A (1.8) BS01 BGC 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    60023 1woq:A (1.8) BS02 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    60024 1woq:A (1.8) BS03 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    60025 1woq:B (1.8) BS01 BGC 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    60026 1woq:B (1.8) BS02 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    60027 1woq:B (1.8) BS03 PO4 2.7.1.63 GO:0016301 ... Q7WT42 15377666
    60028 1wor:A (1.95) BS01 RED 2.1.2.10 GO:0004047 ... Q9WY54 15355973
    60029 1wov:A (1.75) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    60030 1wov:B (1.75) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    60031 1wow:A (2.2) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    60032 1wow:B (2.2) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    60033 1wox:A (2.1) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    60034 1wox:A (2.1) BS02 NO 1.14.14.18 GO:0004392 ... P74133 15766254
    60035 1wox:B (2.1) BS01 HEM 1.14.14.18 GO:0004392 ... P74133 15766254
    60036 1wox:B (2.1) BS02 NO 1.14.14.18 GO:0004392 ... P74133 15766254
    60037 1woy:A (2.0) BS01 ZN 6.1.1.10 GO:0000166 ... P23395 N/A
    60038 1wp4:A (2.0) BS01 SO4 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60039 1wp4:A (2.0) BS02 NDP 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60040 1wp4:B (2.0) BS01 SO4 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60041 1wp4:B (2.0) BS02 NDP 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60042 1wp4:C (2.0) BS01 SO4 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60043 1wp4:C (2.0) BS02 NDP 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60044 1wp4:D (2.0) BS01 NDP 1.1.1.31 GO:0000166 ... Q5SLQ6 16126223
    60045 1wp6:A (2.1) BS01 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    60046 1wp6:A (2.1) BS02 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    60047 1wp6:A (2.1) BS03 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    60048 1wpc:A (1.9) BS01 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    60049 1wpc:A (1.9) BS02 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    60050 1wpc:A (1.9) BS03 GLD 3.2.1.98 GO:0004553 ... P19571 15518553
    60051 1wpc:A (1.9) BS04 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    60052 1wpc:A (1.9) BS05 GLD 3.2.1.98 GO:0004553 ... P19571 15518553
    60053 1wpc:A (1.9) BS06 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    60054 1wpc:A (1.9) BS07 GLC 3.2.1.98 GO:0004553 ... P19571 15518553
    60055 1wpc:A (1.9) BS08 ACI 3.2.1.98 GO:0004553 ... P19571 15518553
    60056 1wpc:A (1.9) BS09 ACI 3.2.1.98 GO:0004553 ... P19571 15518553
    60057 1wpc:A (1.9) BS10 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    60058 1wpc:A (1.9) BS11 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    60059 1wpc:A (1.9) BS12 CA 3.2.1.98 GO:0004553 ... P19571 15518553
    60060 1wpg:A (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    60061 1wpg:A (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    60062 1wpg:A (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    60063 1wpg:B (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    60064 1wpg:B (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    60065 1wpg:B (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    60066 1wpg:C (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    60067 1wpg:C (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    60068 1wpg:C (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    60069 1wpg:D (2.3) BS01 MG 7.2.2.10 GO:0000166 ... P04191 15448704
    60070 1wpg:D (2.3) BS02 MF4 7.2.2.10 GO:0000166 ... P04191 15448704
    60071 1wpg:D (2.3) BS03 ADP 7.2.2.10 GO:0000166 ... P04191 15448704
    60072 1wpk:A (-1.00) BS01 ZN 2.1.1.63
    2.1.1.n11    		 GO:0003677 ... P06134 16452614
    60073 1wpl:A (2.8) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60074 1wpl:A (2.8) BS02 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60075 1wpl:A (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60076 1wpl:A (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60077 1wpl:A (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60078 1wpl:B (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60079 1wpl:B (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60080 1wpl:B (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60081 1wpl:B (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60082 1wpl:B (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60083 1wpl:C (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60084 1wpl:C (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60085 1wpl:C (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60086 1wpl:C (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60087 1wpl:D (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60088 1wpl:D (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60089 1wpl:D (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60090 1wpl:D (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60091 1wpl:D (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60092 1wpl:E (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60093 1wpl:E (2.8) BS02 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60094 1wpl:E (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60095 1wpl:E (2.8) BS04 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60096 1wpl:E (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60097 1wpl:F (2.8) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60098 1wpl:F (2.8) BS02 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60099 1wpl:F (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60100 1wpl:F (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60101 1wpl:F (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60102 1wpl:G (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60103 1wpl:G (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60104 1wpl:G (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60105 1wpl:G (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60106 1wpl:G (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60107 1wpl:H (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60108 1wpl:H (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60109 1wpl:H (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60110 1wpl:H (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60111 1wpl:H (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60112 1wpl:I (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60113 1wpl:I (2.8) BS02 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60114 1wpl:I (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60115 1wpl:I (2.8) BS04 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60116 1wpl:I (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60117 1wpl:J (2.8) BS01 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60118 1wpl:J (2.8) BS02 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60119 1wpl:J (2.8) BS03 HBI 3.5.4.16 GO:0003924 ... P22288 15448133
    60120 1wpl:J (2.8) BS04 ZN 3.5.4.16 GO:0003924 ... P22288 15448133
    60121 1wpl:J (2.8) BS05 3PO 3.5.4.16 GO:0003924 ... P22288 15448133
    60122 1wpm:A (2.05) BS01 SO4 3.6.1.1 GO:0004427 ... P37487 15533045
    60123 1wpm:B (2.05) BS01 SO4 3.6.1.1 GO:0004427 ... P37487 15533045
    60124 1wpn:A (1.3) BS01 MN 3.6.1.1 N/A P37487 15533045
    60125 1wpn:A (1.3) BS02 MN 3.6.1.1 N/A P37487 15533045
    60126 1wpn:A (1.3) BS03 SO4 3.6.1.1 N/A P37487 15533045
    60127 1wpn:B (1.3) BS01 MN 3.6.1.1 N/A P37487 15533045
    60128 1wpn:B (1.3) BS02 MN 3.6.1.1 N/A P37487 15533045
    60129 1wpp:A (2.05) BS01 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    60130 1wpp:A (2.05) BS02 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    60131 1wpp:A (2.05) BS03 SO4 3.6.1.1 GO:0004427 ... P95765 15533045
    60132 1wpp:A (2.05) BS04 SO4 3.6.1.1 GO:0004427 ... P95765 15533045
    60133 1wpp:B (2.05) BS01 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    60134 1wpp:B (2.05) BS02 ZN 3.6.1.1 GO:0004427 ... P95765 15533045
    60135 1wpp:B (2.05) BS03 SO4 3.6.1.1 GO:0004427 ... P95765 15533045
    60136 1wpq:A (2.5) BS01 SO4 1.1.1.8 GO:0004368 ... P21695 16460752
    60137 1wpq:A (2.5) BS02 SO4 1.1.1.8 GO:0004368 ... P21695 16460752
    60138 1wpq:A (2.5) BS03 NAD 1.1.1.8 GO:0004368 ... P21695 16460752
    60139 1wpq:B (2.5) BS01 SO4 1.1.1.8 GO:0004368 ... P21695 16460752
    60140 1wpq:B (2.5) BS02 NAD 1.1.1.8 GO:0004368 ... P21695 16460752
    60141 1wpu:A (1.48) BS01 rna ? GO:0003723 ... P10943 N/A
    60142 1wpu:A (1.48) BS02 HIS ? GO:0003723 ... P10943 N/A
    60143 1wpu:B (1.48) BS01 rna ? GO:0003723 ... P10943 N/A
    60144 1wpu:B (1.48) BS02 HIS ? GO:0003723 ... P10943 N/A
    60145 1wpv:A (1.7) BS01 MG ? GO:0003723 ... P10943 15758992
    60146 1wpv:A (1.7) BS02 HIS ? GO:0003723 ... P10943 15758992
    60147 1wpv:A (1.7) BS03 HIS ? GO:0003723 ... P10943 15758992
    60148 1wpv:B (1.7) BS01 HIS ? GO:0003723 ... P10943 15758992
    60149 1wpv:B (1.7) BS02 MG ? GO:0003723 ... P10943 15758992
    60150 1wpv:B (1.7) BS03 HIS ? GO:0003723 ... P10943 15758992
    60151 1wpv:C (1.7) BS01 HIS ? GO:0003723 ... P10943 15758992
    60152 1wpv:C (1.7) BS02 MG ? GO:0003723 ... P10943 15758992
    60153 1wpv:C (1.7) BS03 HIS ? GO:0003723 ... P10943 15758992
    60154 1wpy:A (1.6) BS01 BTN 6.3.4.15 GO:0004077 ... O57883 16169557
    60155 1wpy:B (1.6) BS01 BTN 6.3.4.15 GO:0004077 ... O57883 16169557
    60156 1wq1:G (2.5) BS01 GDP ? GO:0043087 ... P20936 9219684
    60157 1wq1:R (2.5) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9219684
    60158 1wq1:R (2.5) BS02 GDP 3.6.5.2 GO:0003924 ... P01112 9219684
    60159 1wq1:R (2.5) BS03 AF3 3.6.5.2 GO:0003924 ... P01112 9219684
    60160 1wq3:A (2.0) BS01 IYR 6.1.1.1 GO:0000166 ... P0AGJ9 15671170
    60161 1wq4:A (2.0) BS01 TYR 6.1.1.1 GO:0000166 ... P0AGJ9 15671170
    60162 1wqa:A (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    60163 1wqa:B (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    60164 1wqa:C (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    60165 1wqa:D (2.0) BS01 MG 5.4.2.8 GO:0004615 ... O58651 N/A
    60166 1wql:A (2.2) BS01 FE2 1.14.12.- GO:0005506 ... Q51743 15774891
    60167 1wql:A (2.2) BS02 FES 1.14.12.- GO:0005506 ... Q51743 15774891
    60168 1wql:A (2.2) BS03 OXY 1.14.12.- GO:0005506 ... Q51743 15774891
    60169 1wqv:H (2.5) BS01 CA 3.4.21.21 GO:0004252 ... P08709 15504346
    60170 1wqv:H (2.5) BS02 PSM 3.4.21.21 GO:0004252 ... P08709 15504346 MOAD: ic50=130nM
    PDBbind: -logKd/Ki=6.89, IC50=130nM
    60171 1wqv:L (2.5) BS01 BGC 3.4.21.21 GO:0005509 ... P08709 15504346
    60172 1wqv:L (2.5) BS02 FUC 3.4.21.21 GO:0005509 ... P08709 15504346
    60173 1wqv:L (2.5) BS03 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60174 1wqv:L (2.5) BS04 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60175 1wqv:L (2.5) BS05 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60176 1wqv:L (2.5) BS06 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60177 1wqv:L (2.5) BS07 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60178 1wqv:L (2.5) BS08 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60179 1wqv:L (2.5) BS09 CA 3.4.21.21 GO:0005509 ... P08709 15504346
    60180 1wqw:A (1.45) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 16169557
    60181 1wqw:B (1.45) BS01 BT5 6.3.4.15 GO:0004077 ... O57883 16169557
    60182 1wr5:A (1.4) BS01 HEC ? GO:0009055 ... P00132 14581238
    60183 1wr5:A (1.4) BS02 HEC ? GO:0009055 ... P00132 14581238
    60184 1wr5:A (1.4) BS03 HEC ? GO:0009055 ... P00132 14581238
    60185 1wr5:A (1.4) BS04 HEC ? GO:0009055 ... P00132 14581238
    60186 1wra:A (2.0) BS01 FE 3.1.4.38 N/A Q8DQ62 15908436
    60187 1wra:A (2.0) BS02 FE 3.1.4.38 N/A Q8DQ62 15908436
    60188 1wra:A (2.0) BS03 CA 3.1.4.38 N/A Q8DQ62 15908436
    60189 1wra:A (2.0) BS04 CA 3.1.4.38 N/A Q8DQ62 15908436
    60190 1wra:A (2.0) BS05 PC 3.1.4.38 N/A Q8DQ62 15908436
    60191 1wra:B (2.0) BS01 FE 3.1.4.38 N/A Q8DQ62 15908436
    60192 1wra:B (2.0) BS02 FE 3.1.4.38 N/A Q8DQ62 15908436
    60193 1wra:B (2.0) BS03 CA 3.1.4.38 N/A Q8DQ62 15908436
    60194 1wra:B (2.0) BS04 CA 3.1.4.38 N/A Q8DQ62 15908436
    60195 1wra:B (2.0) BS05 PC 3.1.4.38 N/A Q8DQ62 15908436
    60196 1wri:A (1.2) BS01 FES ? GO:0009055 ... P00237 15513928
    60197 1wrk:A (2.15) BS01 CA ? GO:0005509 ... P63316 N/A
    60198 1wrk:A (2.15) BS02 TFP ? GO:0005509 ... P63316 N/A
    60199 1wrk:A (2.15) BS03 TFP ? GO:0005509 ... P63316 N/A
    60200 1wrk:A (2.15) BS04 TFP ? GO:0005509 ... P63316 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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