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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    59201 1w8f:A (1.05) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59202 1w8f:B (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59203 1w8f:B (1.05) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59204 1w8f:B (1.05) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59205 1w8f:C (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59206 1w8f:C (1.05) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59207 1w8f:C (1.05) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59208 1w8f:D (1.05) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59209 1w8f:D (1.05) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59210 1w8f:D (1.05) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59211 1w8g:A (2.0) BS01 PLP ? GO:0005829 ... P67080 N/A
    59212 1w8h:A (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59213 1w8h:A (1.75) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59214 1w8h:A (1.75) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59215 1w8h:B (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59216 1w8h:B (1.75) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59217 1w8h:B (1.75) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59218 1w8h:C (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59219 1w8h:C (1.75) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59220 1w8h:C (1.75) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59221 1w8h:D (1.75) BS01 FUC ? GO:0030246 ... Q9HYN5 15790314
    59222 1w8h:D (1.75) BS02 CA ? GO:0030246 ... Q9HYN5 15790314
    59223 1w8h:D (1.75) BS03 CA ? GO:0030246 ... Q9HYN5 15790314
    59224 1w8l:A (1.8) BS01 1P3 5.2.1.8 GO:0000413 ... P62937 14993672 MOAD: Ki=320mM
    PDBbind: -logKd/Ki=0.49, Ki=320mM
    59225 1w8m:A (1.65) BS01 E1P 5.2.1.8 GO:0000413 ... P62937 14993672 MOAD: Ki=25mM
    PDBbind: -logKd/Ki=1.60, Ki=25mM
    59226 1w8n:A (2.1) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 15527797
    59227 1w8n:A (2.1) BS02 DAN 3.2.1.18 GO:0004308 ... Q02834 15527797
    59228 1w8o:A (1.7) BS01 GAL 3.2.1.18 GO:0004308 ... Q02834 15527797
    59229 1w8q:A (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59230 1w8q:A (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59231 1w8q:A (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59232 1w8q:A (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59233 1w8q:B (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59234 1w8q:B (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59235 1w8q:B (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59236 1w8q:B (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59237 1w8q:C (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59238 1w8q:C (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59239 1w8q:C (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59240 1w8q:C (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59241 1w8q:D (2.85) BS01 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59242 1w8q:D (2.85) BS02 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59243 1w8q:D (2.85) BS03 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59244 1w8q:D (2.85) BS04 CO 3.4.16.4 GO:0000270 ... P39045 15987687
    59245 1w8s:A (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59246 1w8s:B (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59247 1w8s:C (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59248 1w8s:D (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59249 1w8s:E (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59250 1w8s:F (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59251 1w8s:G (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59252 1w8s:H (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59253 1w8s:I (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59254 1w8s:J (1.85) BS01 FBP 4.1.2.13 GO:0003824 ... P58315 15766250
    59255 1w8t:A (1.4) BS01 BGC ? N/A Q9C171 15784618
    59256 1w8t:A (1.4) BS02 BGC ? N/A Q9C171 15784618
    59257 1w8u:A (1.3) BS01 BMA ? N/A Q9C171 15784618
    59258 1w8u:A (1.3) BS02 BMA ? N/A Q9C171 15784618
    59259 1w8u:A (1.3) BS03 BMA ? N/A Q9C171 15784618
    59260 1w8u:A (1.3) BS04 BMA ? N/A Q9C171 15784618
    59261 1w8y:A (2.4) BS01 MG 3.4.16.4 GO:0000270 ... P39045 15987687
    59262 1w8y:A (2.4) BS02 NCF 3.4.16.4 GO:0000270 ... P39045 15987687
    59263 1w8y:B (2.4) BS01 NCF 3.4.16.4 GO:0000270 ... P39045 15987687
    59264 1w8y:C (2.4) BS01 NCF 3.4.16.4 GO:0000270 ... P39045 15987687
    59265 1w8y:D (2.4) BS01 MG 3.4.16.4 GO:0000270 ... P39045 15987687
    59266 1w8y:D (2.4) BS02 NCF 3.4.16.4 GO:0000270 ... P39045 15987687
    59267 1w92:A (1.7) BS01 HEM 1.7.-.- GO:0005092 ... Q9ER97 15548613
    59268 1w96:A (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    PDBbind: -logKd/Ki=8.41, Kd=3.9nM
    59269 1w96:B (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    59270 1w96:C (1.8) BS01 S1A 6.3.4.14
    6.4.1.2    		 GO:0003989 ... Q00955 15610732 MOAD: Kd=3.9nM
    59271 1w9b:M (1.7) BS01 CGT 3.2.1.147 GO:0004553 ... P29736 15889170 MOAD: ic50=0.99mM
    59272 1w9b:M (1.7) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 15889170
    59273 1w9b:M (1.7) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 15889170
    59274 1w9b:M (1.7) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 15889170
    59275 1w9d:M (1.6) BS01 SEH 3.2.1.147 GO:0004553 ... P29736 15889170 MOAD: ic50=0.58mM
    59276 1w9d:M (1.6) BS02 ZN 3.2.1.147 GO:0004553 ... P29736 15889170
    59277 1w9d:M (1.6) BS03 SO4 3.2.1.147 GO:0004553 ... P29736 15889170
    59278 1w9d:M (1.6) BS04 SO4 3.2.1.147 GO:0004553 ... P29736 15889170
    59279 1w9e:A (1.56) BS01 peptide ? N/A O00560 16533050
    59280 1w9e:A (1.56) BS02 peptide ? N/A O00560 16533050
    59281 1w9e:B (1.56) BS01 peptide ? N/A O00560 16533050
    59282 1w9i:A (1.75) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    59283 1w9i:A (1.75) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    59284 1w9i:A (1.75) BS03 BEF 3.6.4.1 GO:0003774 ... P08799 N/A
    59285 1w9j:A (2.0) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    59286 1w9j:A (2.0) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    59287 1w9j:A (2.0) BS03 ALF 3.6.4.1 GO:0003774 ... P08799 N/A
    59288 1w9k:A (2.05) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    59289 1w9k:A (2.05) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    59290 1w9k:A (2.05) BS03 BEF 3.6.4.1 GO:0003774 ... P08799 N/A
    59291 1w9l:A (1.95) BS01 MG 3.6.4.1 GO:0003774 ... P08799 N/A
    59292 1w9l:A (1.95) BS02 ADP 3.6.4.1 GO:0003774 ... P08799 N/A
    59293 1w9l:A (1.95) BS03 ALF 3.6.4.1 GO:0003774 ... P08799 N/A
    59294 1w9m:A (1.35) BS01 SF4 1.7.99.1 GO:0003824 ... P31101 18560155
    59295 1w9m:A (1.35) BS02 FS2 1.7.99.1 GO:0003824 ... P31101 18560155
    59296 1w9o:A (2.25) BS01 peptide ? N/A O00560 16533050
    59297 1w9o:B (2.25) BS01 peptide ? N/A O00560 16533050
    59298 1w9q:B (1.7) BS01 peptide ? N/A O00560 16533050
    59299 1w9t:A (1.62) BS01 XYP 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59300 1w9t:A (1.62) BS02 XYS 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59301 1w9t:A (1.62) BS03 XYP 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59302 1w9t:B (1.62) BS01 XYP 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59303 1w9t:B (1.62) BS02 XYS 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59304 1w9t:B (1.62) BS03 XYP 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59305 1w9u:A (1.85) BS01 peptide 3.2.1.14 GO:0004553 ... Q873X9 15664516
    59306 1w9u:B (1.85) BS01 peptide 3.2.1.14 GO:0004553 ... Q873X9 15664516
    59307 1w9v:A (2.0) BS01 peptide 3.2.1.14 GO:0004553 ... E9QRF2 15664516
    59308 1w9v:B (2.0) BS01 peptide 3.2.1.14 GO:0004553 ... E9QRF2 15664516
    59309 1w9w:A (2.1) BS01 BGC 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59310 1w9w:A (2.1) BS02 GLC 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59311 1w9w:A (2.1) BS03 BGC 3.2.1.39 GO:0030246 ... Q9KG76 15501830
    59312 1w9x:A (2.1) BS01 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    59313 1w9x:A (2.1) BS02 AC1 3.2.1.1 GO:0004553 ... O82839 15681870
    59314 1w9x:A (2.1) BS03 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    59315 1w9x:A (2.1) BS04 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    59316 1w9x:A (2.1) BS05 GLC 3.2.1.1 GO:0004553 ... O82839 15681870
    59317 1w9x:A (2.1) BS06 AC1 3.2.1.1 GO:0004553 ... O82839 15681870
    59318 1w9x:A (2.1) BS07 CA 3.2.1.1 GO:0004553 ... O82839 15681870
    59319 1w9x:A (2.1) BS08 CA 3.2.1.1 GO:0004553 ... O82839 15681870
    59320 1w9x:A (2.1) BS09 CA 3.2.1.1 GO:0004553 ... O82839 15681870
    59321 1wa0:X (1.6) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    59322 1wa0:X (1.6) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    59323 1wa0:X (1.6) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15610025
    59324 1wa1:X (1.65) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    59325 1wa1:X (1.65) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    59326 1wa1:X (1.65) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15610025
    59327 1wa2:X (1.72) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    59328 1wa2:X (1.72) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    59329 1wa2:X (1.72) BS03 ZN 1.7.2.1 GO:0005507 ... O68601 15610025
    59330 1wa2:X (1.72) BS04 ZN 1.7.2.1 GO:0005507 ... O68601 15610025
    59331 1wa2:X (1.72) BS05 NO2 1.7.2.1 GO:0005507 ... O68601 15610025
    59332 1wa3:A (1.9) BS01 PYR 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59333 1wa3:A (1.9) BS02 SO4 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59334 1wa3:B (1.9) BS01 PYR 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59335 1wa3:B (1.9) BS02 SO4 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59336 1wa3:C (1.9) BS01 PYR 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59337 1wa3:C (1.9) BS02 SO4 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59338 1wa3:D (1.9) BS01 PYR 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59339 1wa3:D (1.9) BS02 SO4 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59340 1wa3:E (1.9) BS01 PYR 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59341 1wa3:E (1.9) BS02 SO4 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59342 1wa3:F (1.9) BS01 PYR 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59343 1wa3:F (1.9) BS02 SO4 4.1.2.14 GO:0016829 ... Q9WXS1 16403639
    59344 1wa5:A (2.0) BS01 GTP 3.6.5.- GO:0003924 ... P62825 N/A
    59345 1wa5:A (2.0) BS02 MG 3.6.5.- GO:0003924 ... P62825 N/A
    59346 1wa6:X (2.55) BS01 FE2 1.14.17.4 GO:0002238 ... Q08506 15489165
    59347 1wa7:A (-1.00) BS01 peptide 2.7.10.2 N/A P07948 11955060
    59348 1waa:A (1.8) BS01 ZN 2.7.11.1 N/A Q8WZ42 19282960
    59349 1waa:B (1.8) BS01 ZN 2.7.11.1 N/A Q8WZ42 19282960
    59350 1waa:C (1.8) BS01 ZN 2.7.11.1 N/A Q8WZ42 19282960
    59351 1waa:D (1.8) BS01 ZN 2.7.11.1 N/A Q8WZ42 19282960
    59352 1waa:E (1.8) BS01 ZN 2.7.11.1 N/A Q8WZ42 19282960
    59353 1waa:F (1.8) BS01 ZN 2.7.11.1 N/A Q8WZ42 19282960
    59354 1wab:A (1.7) BS01 ACT 3.1.1.47 GO:0003847 ... Q29460 8985254
    59355 1wad:A (1.8) BS01 CA ? GO:0009055 ... P00133 8819167
    59356 1wad:A (1.8) BS02 HEM ? GO:0009055 ... P00133 8819167
    59357 1wad:A (1.8) BS03 HEM ? GO:0009055 ... P00133 8819167
    59358 1wad:A (1.8) BS04 HEM ? GO:0009055 ... P00133 8819167
    59359 1wad:A (1.8) BS05 HEM ? GO:0009055 ... P00133 8819167
    59360 1wae:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15554622
    59361 1wae:A (1.95) BS02 ZN 1.7.2.1 GO:0005507 ... O68601 15554622
    59362 1waf:A (3.2) BS01 GMP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 9215631
    59363 1waf:B (3.2) BS01 GMP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 9215631
    59364 1waj:A (2.8) BS01 5GP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... Q38087 9215631
    59365 1wam:A (2.35) BS01 FAD 5.4.99.9 GO:0008767 ... Q48485 15843027
    59366 1wao:1 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59367 1wao:1 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59368 1wao:2 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59369 1wao:2 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59370 1wao:3 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59371 1wao:3 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59372 1wao:4 (2.9) BS01 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59373 1wao:4 (2.9) BS02 MN 3.1.3.16 GO:0000165 ... P53041 15577939
    59374 1wap:A (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59375 1wap:A (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59376 1wap:B (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59377 1wap:B (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59378 1wap:C (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59379 1wap:C (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59380 1wap:D (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59381 1wap:D (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59382 1wap:E (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59383 1wap:E (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59384 1wap:F (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59385 1wap:F (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59386 1wap:G (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59387 1wap:G (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59388 1wap:H (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59389 1wap:H (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59390 1wap:I (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59391 1wap:I (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59392 1wap:J (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59393 1wap:J (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59394 1wap:K (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59395 1wap:K (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59396 1wap:L (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59397 1wap:L (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59398 1wap:M (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    59399 1wap:M (1.8) BS02 TRP ? GO:0003723 ... P19466 7715723
    59400 1wap:N (1.8) BS01 TRP ? GO:0003723 ... P19466 7715723
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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