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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    57001 1vqo:D (2.2) BS02 rna ? GO:0000049 ... P14124 16285925
    57002 1vqo:E (2.2) BS01 rna ? GO:0002181 ... P14135 16285925
    57003 1vqo:F (2.2) BS01 rna ? GO:0001682 ... P12743 16285925
    57004 1vqo:H (2.2) BS01 rna ? GO:0000027 ... P60617 16285925
    57005 1vqo:I (2.2) BS01 rna ? GO:0003735 ... P14122 16285925
    57006 1vqo:J (2.2) BS01 rna ? GO:0003729 ... P29198 16285925
    57007 1vqo:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    57008 1vqo:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    57009 1vqo:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    57010 1vqo:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    57011 1vqo:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    57012 1vqo:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    57013 1vqo:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    57014 1vqo:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    57015 1vqo:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    57016 1vqo:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    57017 1vqo:S (2.2) BS01 rna ? GO:0000027 ... P12732 16285925
    57018 1vqo:T (2.2) BS01 rna ? GO:0002181 ... P10972 16285925
    57019 1vqo:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    57020 1vqo:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    57021 1vqo:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    57022 1vqo:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    57023 1vqo:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    57024 1vqo:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    57025 1vqo:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    57026 1vqo:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    57027 1vqo:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    57028 1vqp:1 (2.25) BS01 rna ? GO:0003723 ... P32410 16285925
    57029 1vqp:2 (2.25) BS01 rna ? GO:0003735 ... P22452 16285925
    57030 1vqp:3 (2.25) BS01 rna ? GO:0000049 ... P32411 16285925
    57031 1vqp:A (2.25) BS01 rna ? GO:0002181 ... P20276 16285925
    57032 1vqp:A (2.25) BS02 MG ? GO:0002181 ... P20276 16285925
    57033 1vqp:A (2.25) BS03 MG ? GO:0002181 ... P20276 16285925
    57034 1vqp:B (2.25) BS01 rna ? GO:0003723 ... P20279 16285925
    57035 1vqp:C (2.25) BS01 rna ? GO:0003723 ... P12735 16285925
    57036 1vqp:D (2.25) BS01 rna ? GO:0000049 ... P14124 16285925
    57037 1vqp:D (2.25) BS02 rna ? GO:0000049 ... P14124 16285925
    57038 1vqp:E (2.25) BS01 rna ? GO:0002181 ... P14135 16285925
    57039 1vqp:F (2.25) BS01 rna ? GO:0001682 ... P12743 16285925
    57040 1vqp:H (2.25) BS01 rna ? GO:0000027 ... P60617 16285925
    57041 1vqp:I (2.25) BS01 rna ? GO:0003735 ... P14122 16285925
    57042 1vqp:J (2.25) BS01 rna ? GO:0003729 ... P29198 16285925
    57043 1vqp:K (2.25) BS01 rna ? GO:0003735 ... P22450 16285925
    57044 1vqp:L (2.25) BS01 rna ? GO:0003735 ... P12737 16285925
    57045 1vqp:M (2.25) BS01 rna ? GO:0002181 ... P60618 16285925
    57046 1vqp:N (2.25) BS01 rna ? GO:0000027 ... P14123 16285925
    57047 1vqp:N (2.25) BS02 rna ? GO:0000027 ... P14123 16285925
    57048 1vqp:O (2.25) BS01 rna ? GO:0003723 ... P12733 16285925
    57049 1vqp:P (2.25) BS01 rna ? GO:0003723 ... P14119 16285925
    57050 1vqp:Q (2.25) BS01 rna ? GO:0003735 ... P12734 16285925
    57051 1vqp:Q (2.25) BS02 rna ? GO:0003735 ... P12734 16285925
    57052 1vqp:R (2.25) BS01 rna ? GO:0002181 ... P10970 16285925
    57053 1vqp:S (2.25) BS01 rna ? GO:0000027 ... P12732 16285925
    57054 1vqp:T (2.25) BS01 rna ? GO:0002181 ... P10972 16285925
    57055 1vqp:T (2.25) BS02 MG ? GO:0002181 ... P10972 16285925
    57056 1vqp:U (2.25) BS01 rna ? GO:0003735 ... P14116 16285925
    57057 1vqp:V (2.25) BS01 rna ? GO:0003735 ... P10971 16285925
    57058 1vqp:W (2.25) BS01 rna ? GO:0000463 ... P14121 16285925
    57059 1vqp:W (2.25) BS02 rna ? GO:0000463 ... P14121 16285925
    57060 1vqp:X (2.25) BS01 rna ? GO:0002181 ... P18138 16285925
    57061 1vqp:Y (2.25) BS01 rna ? GO:0000166 ... P12736 16285925
    57062 1vqp:Y (2.25) BS02 MG ? GO:0000166 ... P12736 16285925
    57063 1vqp:Z (2.25) BS01 rna ? GO:0003735 ... P60619 16285925
    57064 1vqw:A (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    57065 1vqw:B (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    57066 1vr0:A (2.49) BS01 MG 3.1.3.71 GO:0000287 ... Q97E82 16927339
    57067 1vr0:A (2.49) BS02 3SL 3.1.3.71 GO:0000287 ... Q97E82 16927339
    57068 1vr0:B (2.49) BS01 MG 3.1.3.71 GO:0000287 ... Q97E82 16927339
    57069 1vr0:B (2.49) BS02 3SL 3.1.3.71 GO:0000287 ... Q97E82 16927339
    57070 1vr0:C (2.49) BS01 3SL 3.1.3.71 GO:0000287 ... Q97E82 16927339
    57071 1vr1:H (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10543954
    57072 1vr1:H (1.9) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10543954
    57073 1vr8:A (1.75) BS01 AZI ? N/A Q9X1V7 16948158
    57074 1vrb:A (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    57075 1vrb:B (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    57076 1vrb:C (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    57077 1vrb:D (2.6) BS01 FE ? GO:0046872 ... P46327 N/A
    57078 1vrc:A (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    57079 1vrc:B (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    57080 1vrc:C (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    57081 1vrc:D (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    57082 1vre:A (-1.00) BS01 HEM ? GO:0001666 ... P15447 9692983
    57083 1vrf:A (-1.00) BS01 HEM ? GO:0001666 ... P15447 9692983
    57084 1vrg:A (2.3) BS01 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57085 1vrg:B (2.3) BS01 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57086 1vrg:B (2.3) BS02 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57087 1vrg:C (2.3) BS01 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57088 1vrg:C (2.3) BS02 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57089 1vrg:D (2.3) BS01 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57090 1vrg:D (2.3) BS02 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57091 1vrg:E (2.3) BS01 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57092 1vrg:E (2.3) BS02 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57093 1vrg:F (2.3) BS01 BCT 6.4.1.2 GO:0004658 ... Q9WZH5 N/A
    57094 1vrh:1 (3.0) BS01 SD8 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0005198 ... P03303 8648640
    57095 1vrk:A (1.9) BS01 peptide N/A GO:0005509 ... N/A 10194305
    57096 1vrk:A (1.9) BS02 CA N/A GO:0005509 ... N/A 10194305
    57097 1vrk:A (1.9) BS03 CA N/A GO:0005509 ... N/A 10194305
    57098 1vrk:A (1.9) BS04 CA N/A GO:0005509 ... N/A 10194305
    57099 1vrk:A (1.9) BS05 CA N/A GO:0005509 ... N/A 10194305
    57100 1vrl:A (2.5) BS01 dna 3.2.2.31 GO:0000701 ... P83847 14961129
    57101 1vrl:A (2.5) BS02 dna 3.2.2.31 GO:0000701 ... P83847 14961129
    57102 1vrl:A (2.5) BS03 CA 3.2.2.31 GO:0000701 ... P83847 14961129
    57103 1vrl:A (2.5) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 14961129
    57104 1vrl:A (2.5) BS05 ADE 3.2.2.31 GO:0000701 ... P83847 14961129
    57105 1vrn:C (2.2) BS01 HEC ? GO:0005506 ... P07173 15858271
    57106 1vrn:C (2.2) BS02 HEC ? GO:0005506 ... P07173 15858271
    57107 1vrn:C (2.2) BS03 HEC ? GO:0005506 ... P07173 15858271
    57108 1vrn:C (2.2) BS04 HEC ? GO:0005506 ... P07173 15858271
    57109 1vrn:L (2.2) BS01 BCB ? GO:0009772 ... P06009 15858271
    57110 1vrn:L (2.2) BS02 BCB ? GO:0009772 ... P06009 15858271
    57111 1vrn:L (2.2) BS03 BPB ? GO:0009772 ... P06009 15858271
    57112 1vrn:L (2.2) BS04 UQ7 ? GO:0009772 ... P06009 15858271
    57113 1vrn:L (2.2) BS05 FE2 ? GO:0009772 ... P06009 15858271
    57114 1vrn:L (2.2) BS06 BCB ? GO:0009772 ... P06009 15858271
    57115 1vrn:L (2.2) BS07 BPB ? GO:0009772 ... P06009 15858271
    57116 1vrn:L (2.2) BS08 MQ9 ? GO:0009772 ... P06009 15858271
    57117 1vrn:M (2.2) BS01 BCB ? GO:0009772 ... P06010 15858271
    57118 1vrn:M (2.2) BS02 BPB ? GO:0009772 ... P06010 15858271
    57119 1vrn:M (2.2) BS03 FE2 ? GO:0009772 ... P06010 15858271
    57120 1vrn:M (2.2) BS04 BCB ? GO:0009772 ... P06010 15858271
    57121 1vrn:M (2.2) BS05 BCB ? GO:0009772 ... P06010 15858271
    57122 1vrn:M (2.2) BS06 BPB ? GO:0009772 ... P06010 15858271
    57123 1vrn:M (2.2) BS07 MQ9 ? GO:0009772 ... P06010 15858271
    57124 1vrn:M (2.2) BS08 NS5 ? GO:0009772 ... P06010 15858271
    57125 1vrp:A (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    57126 1vrp:B (2.1) BS01 NO3 2.7.3.2 GO:0003824 ... P04414 12437342
    57127 1vrp:B (2.1) BS02 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    57128 1vrp:B (2.1) BS03 IOM 2.7.3.2 GO:0003824 ... P04414 12437342
    57129 1vrq:A (2.2) BS01 NAD 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    57130 1vrq:A (2.2) BS02 FON 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    57131 1vrq:A (2.2) BS03 FMN 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    57132 1vrq:B (2.2) BS01 FAD 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    57133 1vrq:B (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    57134 1vrq:B (2.2) BS03 DMG 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    57135 1vrq:D (2.2) BS01 ZN 1.5.3.24 GO:0005737 ... Q50LF1 15946648
    57136 1vrr:A (2.7) BS01 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    57137 1vrr:A (2.7) BS02 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    57138 1vrr:B (2.7) BS01 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    57139 1vrr:B (2.7) BS02 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    57140 1vru:A (2.4) BS01 AAP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 7540934 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    57141 1vrw:A (2.4) BS01 NAI 1.3.1.9 GO:0004318 ... Q9BH77 11792710
    57142 1vrw:B (2.4) BS01 NAI 1.3.1.9 GO:0004318 ... Q9BH77 11792710
    57143 1vs0:A (2.4) BS01 ZN 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    57144 1vs0:A (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    57145 1vs0:A (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    57146 1vs0:B (2.4) BS01 ZN 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    57147 1vs0:B (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    57148 1vs0:B (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    57149 1vs1:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57150 1vs1:A (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57151 1vs1:B (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57152 1vs1:B (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57153 1vs1:C (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57154 1vs1:C (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57155 1vs1:D (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57156 1vs1:D (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    57157 1vsd:A (1.7) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 8805516
    57158 1vsf:A (2.05) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 8805516
    57159 1vsh:A (1.95) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    57160 1vsh:A (1.95) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    57161 1vsh:A (1.95) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    57162 1vsi:A (2.2) BS01 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    57163 1vsj:A (2.1) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    57164 1vsj:A (2.1) BS02 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-
    GO:0003676 ... O92956 9218451
    57165 1vsn:A (2.0) BS01 NFT 3.4.22.38 GO:0006508 ... P43235 16413777 PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    57166 1vso:A (1.85) BS01 AT1 ? GO:0015276 ... P22756 17581823 MOAD: Ki=18980nM
    PDBbind: -logKd/Ki=4.72, Ki=18.98uM
    BindingDB: Ki=2900nM
    57167 1vsr:A (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09184 10360178
    57168 1vst:A (2.8) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    57169 1vst:A (2.8) BS02 PRP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    57170 1vsv:A (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    57171 1vsv:B (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    57172 1vsv:C (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    57173 1vsv:D (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    57174 1vtk:A (2.75) BS01 ADP 2.7.1.21 GO:0004797 ... P0DTH5 9336833
    57175 1vtk:A (2.75) BS02 TMP 2.7.1.21 GO:0004797 ... P0DTH5 9336833
    57176 1vtl:E (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    57177 1vtl:E (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    57178 1vtl:F (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    57179 1vtl:F (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    57180 1vtm:P (3.5) BS01 rna ? GO:0019029 ... P03579 1453461
    57181 1vtn:C (2.5) BS01 dna ? GO:0003700 ... P55318 8332212
    57182 1vtn:C (2.5) BS02 dna ? GO:0003700 ... P55318 8332212
    57183 1vtn:C (2.5) BS03 MG ? GO:0003700 ... P55318 8332212
    57184 1vto:A (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    57185 1vto:A (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    57186 1vto:B (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    57187 1vto:B (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    57188 1vvj:QB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    57189 1vvj:QC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    57190 1vvj:QD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    57191 1vvj:QD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    57192 1vvj:QE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    57193 1vvj:QF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    57194 1vvj:QF (3.44) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    57195 1vvj:QG (3.44) BS01 rna ? GO:0000028 ... P17291 25128388
    57196 1vvj:QH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    57197 1vvj:QH (3.44) BS02 MG N/A GO:0003735 ... N/A 25128388
    57198 1vvj:QI (3.44) BS01 rna ? GO:0000049 ... P80374 25128388
    57199 1vvj:QI (3.44) BS02 rna ? GO:0000049 ... P80374 25128388
    57200 1vvj:QJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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