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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    55601 1v59:B (2.2) BS02 NAD 1.8.1.4 GO:0004148 ... P09624 N/A
    55602 1v5e:A (1.6) BS01 FAD 1.2.3.3 GO:0000166 ... A9X9K8 N/A
    55603 1v5f:A (1.8) BS01 MG N/A GO:0000287 ... N/A 18007037
    55604 1v5f:A (1.8) BS02 FAD N/A GO:0000287 ... N/A 18007037
    55605 1v5f:A (1.8) BS03 TPP N/A GO:0000287 ... N/A 18007037
    55606 1v5g:A (1.96) BS01 MG N/A GO:0000287 ... N/A 18007037
    55607 1v5g:A (1.96) BS02 FAD N/A GO:0000287 ... N/A 18007037
    55608 1v5g:A (1.96) BS03 HTL N/A GO:0000287 ... N/A 18007037
    55609 1v5h:A (2.4) BS01 HEM 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15165856
    55610 1v5i:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    55611 1v5n:A (-1.00) BS01 ZN 1.8.1.8 N/A O80763 N/A
    55612 1v5n:A (-1.00) BS02 ZN 1.8.1.8 N/A O80763 N/A
    55613 1v5r:A (-1.00) BS01 ZN ? GO:0008017 ... P11862 N/A
    55614 1v5y:A (1.9) BS01 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55615 1v5y:A (1.9) BS02 4HC 1.6.99.- GO:0008218 ... P46072 N/A
    55616 1v5y:A (1.9) BS03 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55617 1v5y:B (1.9) BS01 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55618 1v5y:B (1.9) BS02 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55619 1v5y:B (1.9) BS03 4HC 1.6.99.- GO:0008218 ... P46072 N/A
    55620 1v5z:A (2.0) BS01 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55621 1v5z:A (2.0) BS02 2HC 1.6.99.- GO:0008218 ... P46072 N/A
    55622 1v5z:A (2.0) BS03 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55623 1v5z:A (2.0) BS04 2HC 1.6.99.- GO:0008218 ... P46072 N/A
    55624 1v5z:B (2.0) BS01 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55625 1v5z:B (2.0) BS02 2HC 1.6.99.- GO:0008218 ... P46072 N/A
    55626 1v5z:B (2.0) BS03 FMN 1.6.99.- GO:0008218 ... P46072 N/A
    55627 1v5z:B (2.0) BS04 2HC 1.6.99.- GO:0008218 ... P46072 N/A
    55628 1v67:A (2.3) BS01 ZN 4.2.1.1 GO:0046872 ... O59257 18931408
    55629 1v67:A (2.3) BS02 CA 4.2.1.1 GO:0046872 ... O59257 18931408
    55630 1v6a:A (2.3) BS01 GLC 1.1.1.27 GO:0003824 ... Q9W7K5 N/A
    55631 1v6a:A (2.3) BS02 GLC 1.1.1.27 GO:0003824 ... Q9W7K5 N/A
    55632 1v6a:A (2.3) BS03 GLC 1.1.1.27 GO:0003824 ... Q9W7K5 N/A
    55633 1v6a:B (2.3) BS01 GLC 1.1.1.27 GO:0003824 ... Q9W7K5 N/A
    55634 1v6c:A (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    55635 1v6c:A (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    55636 1v6c:A (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    55637 1v6c:B (1.8) BS01 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    55638 1v6c:B (1.8) BS02 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    55639 1v6c:B (1.8) BS03 CA 3.4.21.- GO:0004252 ... Q65Z69 N/A
    55640 1v6d:A (1.9) BS01 peptide 3.4.21.4 GO:0004252 ... P00761 15842169
    55641 1v6d:A (1.9) BS02 CA 3.4.21.4 GO:0004252 ... P00761 15842169
    55642 1v6d:A (1.9) BS03 ACT 3.4.21.4 GO:0004252 ... P00761 15842169
    55643 1v6g:A (-1.00) BS01 ZN ? N/A Q6H8Q1 N/A
    55644 1v6g:A (-1.00) BS02 ZN ? N/A Q6H8Q1 N/A
    55645 1v6i:A (2.15) BS01 GAL ? GO:0030246 ... P02872 14747696
    55646 1v6i:A (2.15) BS02 CA ? GO:0030246 ... P02872 14747696
    55647 1v6i:A (2.15) BS03 MN ? GO:0030246 ... P02872 14747696
    55648 1v6i:B (2.15) BS01 GLC ? GO:0030246 ... P02872 14747696
    55649 1v6i:B (2.15) BS02 GAL ? GO:0030246 ... P02872 14747696
    55650 1v6i:B (2.15) BS03 CA ? GO:0030246 ... P02872 14747696
    55651 1v6i:B (2.15) BS04 MN ? GO:0030246 ... P02872 14747696
    55652 1v6i:C (2.15) BS01 GLC ? GO:0030246 ... P02872 14747696
    55653 1v6i:C (2.15) BS02 GAL ? GO:0030246 ... P02872 14747696
    55654 1v6i:C (2.15) BS03 CA ? GO:0030246 ... P02872 14747696
    55655 1v6i:C (2.15) BS04 MN ? GO:0030246 ... P02872 14747696
    55656 1v6i:D (2.15) BS01 GLC ? GO:0030246 ... P02872 14747696
    55657 1v6i:D (2.15) BS02 GAL ? GO:0030246 ... P02872 14747696
    55658 1v6i:D (2.15) BS03 CA ? GO:0030246 ... P02872 14747696
    55659 1v6i:D (2.15) BS04 MN ? GO:0030246 ... P02872 14747696
    55660 1v6j:A (2.9) BS01 GLC ? GO:0030246 ... P02872 14747696
    55661 1v6j:A (2.9) BS02 GAL ? GO:0030246 ... P02872 14747696
    55662 1v6j:A (2.9) BS03 CA ? GO:0030246 ... P02872 14747696
    55663 1v6j:A (2.9) BS04 MN ? GO:0030246 ... P02872 14747696
    55664 1v6j:B (2.9) BS01 GAL ? GO:0030246 ... P02872 14747696
    55665 1v6j:B (2.9) BS02 CA ? GO:0030246 ... P02872 14747696
    55666 1v6j:B (2.9) BS03 MN ? GO:0030246 ... P02872 14747696
    55667 1v6j:C (2.9) BS01 GLC ? GO:0030246 ... P02872 14747696
    55668 1v6j:C (2.9) BS02 GAL ? GO:0030246 ... P02872 14747696
    55669 1v6j:C (2.9) BS03 CA ? GO:0030246 ... P02872 14747696
    55670 1v6j:C (2.9) BS04 MN ? GO:0030246 ... P02872 14747696
    55671 1v6j:D (2.9) BS01 GLC ? GO:0030246 ... P02872 14747696
    55672 1v6j:D (2.9) BS02 GAL ? GO:0030246 ... P02872 14747696
    55673 1v6j:D (2.9) BS03 CA ? GO:0030246 ... P02872 14747696
    55674 1v6j:D (2.9) BS04 MN ? GO:0030246 ... P02872 14747696
    55675 1v6k:A (2.4) BS01 GLC ? GO:0030246 ... P02872 14747696
    55676 1v6k:A (2.4) BS02 GAL ? GO:0030246 ... P02872 14747696
    55677 1v6k:A (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    55678 1v6k:A (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    55679 1v6k:B (2.4) BS01 GLC ? GO:0030246 ... P02872 14747696
    55680 1v6k:B (2.4) BS02 GAL ? GO:0030246 ... P02872 14747696
    55681 1v6k:B (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    55682 1v6k:B (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    55683 1v6k:C (2.4) BS01 GLC ? GO:0030246 ... P02872 14747696
    55684 1v6k:C (2.4) BS02 GAL ? GO:0030246 ... P02872 14747696
    55685 1v6k:C (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    55686 1v6k:C (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    55687 1v6k:D (2.4) BS01 GLC ? GO:0030246 ... P02872 14747696
    55688 1v6k:D (2.4) BS02 GAL ? GO:0030246 ... P02872 14747696
    55689 1v6k:D (2.4) BS03 CA ? GO:0030246 ... P02872 14747696
    55690 1v6k:D (2.4) BS04 MN ? GO:0030246 ... P02872 14747696
    55691 1v6l:A (2.5) BS01 GLC ? GO:0030246 ... P02872 14747696
    55692 1v6l:A (2.5) BS02 GAL ? GO:0030246 ... P02872 14747696
    55693 1v6l:A (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    55694 1v6l:A (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    55695 1v6l:B (2.5) BS01 BGC ? GO:0030246 ... P02872 14747696
    55696 1v6l:B (2.5) BS02 GAL ? GO:0030246 ... P02872 14747696
    55697 1v6l:B (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    55698 1v6l:B (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    55699 1v6l:C (2.5) BS01 BGC ? GO:0030246 ... P02872 14747696
    55700 1v6l:C (2.5) BS02 GAL ? GO:0030246 ... P02872 14747696
    55701 1v6l:C (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    55702 1v6l:C (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    55703 1v6l:D (2.5) BS01 GLC ? GO:0030246 ... P02872 14747696
    55704 1v6l:D (2.5) BS02 GAL ? GO:0030246 ... P02872 14747696
    55705 1v6l:D (2.5) BS03 CA ? GO:0030246 ... P02872 14747696
    55706 1v6l:D (2.5) BS04 MN ? GO:0030246 ... P02872 14747696
    55707 1v6m:A (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55708 1v6m:A (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55709 1v6m:B (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55710 1v6m:B (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55711 1v6m:C (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55712 1v6m:C (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55713 1v6m:D (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55714 1v6m:D (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55715 1v6m:E (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55716 1v6m:E (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55717 1v6m:F (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55718 1v6m:F (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55719 1v6m:G (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55720 1v6m:G (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55721 1v6m:H (2.7) BS01 CA ? GO:0030246 ... P02872 14747696
    55722 1v6m:H (2.7) BS02 MN ? GO:0030246 ... P02872 14747696
    55723 1v6n:A (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55724 1v6n:A (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55725 1v6n:B (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55726 1v6n:B (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55727 1v6n:C (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55728 1v6n:C (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55729 1v6n:D (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55730 1v6n:D (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55731 1v6n:E (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55732 1v6n:E (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55733 1v6n:F (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55734 1v6n:F (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55735 1v6n:G (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55736 1v6n:G (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55737 1v6n:H (3.5) BS01 CA ? GO:0030246 ... P02872 14747696
    55738 1v6n:H (3.5) BS02 MN ? GO:0030246 ... P02872 14747696
    55739 1v6o:A (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55740 1v6o:A (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55741 1v6o:B (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55742 1v6o:B (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55743 1v6o:C (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55744 1v6o:C (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55745 1v6o:D (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55746 1v6o:D (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55747 1v6o:E (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55748 1v6o:E (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55749 1v6o:F (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55750 1v6o:F (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55751 1v6o:G (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55752 1v6o:G (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55753 1v6o:H (3.0) BS01 CA ? GO:0030246 ... P02872 14747696
    55754 1v6o:H (3.0) BS02 MN ? GO:0030246 ... P02872 14747696
    55755 1v6p:A (0.87) BS01 CU ? GO:0005576 ... P60770 15252034
    55756 1v6p:A (0.87) BS02 CU ? GO:0005576 ... P60770 15252034
    55757 1v6p:B (0.87) BS01 CU ? GO:0005576 ... P60770 15252034
    55758 1v6u:A (2.1) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55759 1v6u:A (2.1) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55760 1v6u:A (2.1) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55761 1v6u:A (2.1) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55762 1v6u:A (2.1) BS05 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55763 1v6u:A (2.1) BS06 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55764 1v6u:A (2.1) BS07 XYS 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55765 1v6u:B (2.1) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55766 1v6u:B (2.1) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55767 1v6u:B (2.1) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55768 1v6u:B (2.1) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55769 1v6u:B (2.1) BS05 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55770 1v6v:A (2.1) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55771 1v6v:A (2.1) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55772 1v6v:A (2.1) BS03 AHR 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55773 1v6v:A (2.1) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55774 1v6v:A (2.1) BS05 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55775 1v6v:A (2.1) BS06 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55776 1v6v:A (2.1) BS07 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55777 1v6v:A (2.1) BS08 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55778 1v6v:B (2.1) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55779 1v6v:B (2.1) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55780 1v6v:B (2.1) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55781 1v6v:B (2.1) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55782 1v6v:B (2.1) BS05 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55783 1v6v:B (2.1) BS06 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55784 1v6w:A (2.0) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55785 1v6w:A (2.0) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55786 1v6w:A (2.0) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55787 1v6w:A (2.0) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55788 1v6w:B (2.0) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55789 1v6w:B (2.0) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55790 1v6w:B (2.0) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55791 1v6x:A (2.1) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55792 1v6x:A (2.1) BS02 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55793 1v6x:A (2.1) BS03 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55794 1v6x:A (2.1) BS04 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55795 1v6x:A (2.1) BS05 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55796 1v6x:A (2.1) BS06 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55797 1v6x:A (2.1) BS07 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55798 1v6x:A (2.1) BS08 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55799 1v6x:A (2.1) BS09 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    55800 1v6x:B (2.1) BS01 XYP 3.2.1.8 GO:0000272 ... Q7SI98 14670957
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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