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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    50801 1t9d:D (2.3) BS02 PYD 2.2.1.6 GO:0000287 ... P07342 15709745
    50802 1t9d:D (2.3) BS03 1MM 2.2.1.6 GO:0000287 ... P07342 15709745
    50803 1t9d:D (2.3) BS04 MG 2.2.1.6 GO:0000287 ... P07342 15709745
    50804 1t9d:D (2.3) BS05 FAD 2.2.1.6 GO:0000287 ... P07342 15709745
    50805 1t9d:D (2.3) BS06 PYD 2.2.1.6 GO:0000287 ... P07342 15709745
    50806 1t9g:A (2.9) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50807 1t9g:A (2.9) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50808 1t9g:B (2.9) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50809 1t9g:B (2.9) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50810 1t9g:C (2.9) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50811 1t9g:C (2.9) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50812 1t9g:D (2.9) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50813 1t9g:D (2.9) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15159392
    50814 1t9g:S (2.9) BS01 AMP ? GO:0005515 ... P38117 15159392
    50815 1t9h:A (1.6) BS01 ZN 3.6.1.- GO:0003924 ... O34530 15223319
    50816 1t9h:A (1.6) BS02 CA 3.6.1.- GO:0003924 ... O34530 15223319
    50817 1t9i:A (1.6) BS01 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=1.8nM
    50818 1t9i:A (1.6) BS02 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=1.8nM
    50819 1t9i:B (1.6) BS01 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=1.8nM
    50820 1t9i:B (1.6) BS02 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=1.8nM
    50821 1t9j:A (2.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=0.6nM
    50822 1t9j:A (2.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=0.6nM
    50823 1t9j:B (2.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=0.6nM
    50824 1t9j:B (2.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 15518550 PDBbind: Kd=0.6nM
    50825 1t9m:A (1.9) BS01 FMN 1.4.-.-
    1.4.3.5
    GO:0000166 ... O69755 15502343
    50826 1t9m:A (1.9) BS02 FMN 1.4.-.-
    1.4.3.5
    GO:0000166 ... O69755 15502343
    50827 1t9m:B (1.9) BS01 FMN 1.4.-.-
    1.4.3.5
    GO:0000166 ... O69755 15502343
    50828 1t9m:B (1.9) BS02 FMN 1.4.-.-
    1.4.3.5
    GO:0000166 ... O69755 15502343
    50829 1t9n:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15667203
    50830 1t9o:A (2.0) BS01 FE ? GO:0005506 ... P00268 15382226
    50831 1t9o:B (2.0) BS01 FE ? GO:0005506 ... P00268 15382226
    50832 1t9o:C (2.0) BS01 FE ? GO:0005506 ... P00268 15382226
    50833 1t9p:A (1.5) BS01 FE ? GO:0005506 ... P00268 15382226
    50834 1t9p:B (1.5) BS01 FE ? GO:0005506 ... P00268 15382226
    50835 1t9p:C (1.5) BS01 FE ? GO:0005506 ... P00268 15382226
    50836 1t9q:A (1.8) BS01 FE ? GO:0005506 ... P00268 15382226
    50837 1t9r:A (2.1) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 15260978
    50838 1t9s:A (2.0) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 15260978
    50839 1t9s:A (2.0) BS02 5GP 3.1.4.35 GO:0004114 ... O76074 15260978
    50840 1t9s:B (2.0) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 15260978
    50841 1t9s:B (2.0) BS02 5GP 3.1.4.35 GO:0004114 ... O76074 15260978
    50842 1t9u:A (3.11) BS01 CPF ? GO:0005515 ... P31224 16166543
    50843 1t9u:A (3.11) BS02 CPF ? GO:0005515 ... P31224 16166543
    50844 1t9v:A (3.8) BS01 RHQ ? GO:0005515 ... P31224 16166543
    50845 1t9w:A (3.23) BS01 NFN ? GO:0005515 ... P31224 16166543
    50846 1t9w:A (3.23) BS02 NFN ? GO:0005515 ... P31224 16166543
    50847 1t9x:A (3.08) BS01 ET ? GO:0005515 ... P31224 16166543
    50848 1t9y:A (3.64) BS01 MC2 ? GO:0005515 ... P31224 16166543
    50849 1t9y:A (3.64) BS02 MC2 ? GO:0005515 ... P31224 16166543
    50850 1t9z:A (2.3) BS01 MG 3.1.3.16 GO:0008420 ... Q9GZU7 15304220
    50851 1ta0:A (2.1) BS01 MG 3.1.3.16 GO:0008420 ... Q9GZU7 15304220
    50852 1ta1:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50853 1ta1:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50854 1ta1:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50855 1ta1:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50856 1ta1:C (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50857 1ta1:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50858 1ta2:A (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9703466
    50859 1ta2:A (2.3) BS02 176 3.4.21.5 GO:0004252 ... P00734 9703466 MOAD: Ki=3nM
    PDBbind: -logKd/Ki=8.52, Ki=3nM
    BindingDB: Ki=3nM
    50860 1ta4:A (2.28) BS01 ART 1.2.1.11 GO:0004073 ... P44801 15583380
    50861 1ta4:A (2.28) BS02 ART 1.2.1.11 GO:0004073 ... P44801 15583380
    50862 1ta6:A (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9703466
    50863 1ta6:A (1.9) BS02 177 3.4.21.5 GO:0004252 ... P00734 9703466 MOAD: Ki=0.74nM
    PDBbind: -logKd/Ki=9.13, Ki=0.74nM
    BindingDB: Ki=0.74nM
    50864 1ta8:A (1.8) BS01 NMN 6.5.1.2 GO:0003911 ... Q837V6 15296738
    50865 1ta9:A (1.9) BS01 ZN 1.1.1.6 GO:0005739 ... O13702 N/A
    50866 1ta9:B (1.9) BS01 ZN 1.1.1.6 GO:0005739 ... O13702 N/A
    50867 1tad:A (1.7) BS01 CA ? GO:0000035 ... P04695 7969474
    50868 1tad:A (1.7) BS02 ALF ? GO:0000035 ... P04695 7969474
    50869 1tad:A (1.7) BS03 GDP ? GO:0000035 ... P04695 7969474
    50870 1tad:B (1.7) BS01 CA ? GO:0000035 ... P04695 7969474
    50871 1tad:B (1.7) BS02 ALF ? GO:0000035 ... P04695 7969474
    50872 1tad:B (1.7) BS03 GDP ? GO:0000035 ... P04695 7969474
    50873 1tad:C (1.7) BS01 CA ? GO:0000035 ... P04695 7969474
    50874 1tad:C (1.7) BS02 ALF ? GO:0000035 ... P04695 7969474
    50875 1tad:C (1.7) BS03 GDP ? GO:0000035 ... P04695 7969474
    50876 1tae:A (2.7) BS01 NAD 6.5.1.2 GO:0003911 ... Q837V6 15296738
    50877 1tae:B (2.7) BS01 NAD 6.5.1.2 GO:0003911 ... Q837V6 15296738
    50878 1tae:C (2.7) BS01 NAD 6.5.1.2 GO:0003911 ... Q837V6 15296738
    50879 1tae:D (2.7) BS01 NAD 6.5.1.2 GO:0003911 ... Q837V6 15296738
    50880 1taf:B (2.0) BS01 ZN ? GO:0000124 ... P49847 8598927
    50881 1tag:A (1.8) BS01 GDP ? GO:0000035 ... P04695 8208289
    50882 1tah:A (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    50883 1tah:B (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    50884 1tah:C (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    50885 1tah:D (3.0) BS01 CA 3.1.1.3 GO:0004806 ... P0DUB8 8405390
    50886 1taq:A (2.4) BS01 ZN 2.7.7.7 GO:0001882 ... P19821 7637814
    50887 1tar:A (2.2) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50888 1tar:B (2.2) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50889 1tas:A (2.8) BS01 PLA 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50890 1tas:A (2.8) BS02 PLA 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50891 1tas:B (2.8) BS01 PLA 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50892 1tas:B (2.8) BS02 PLA 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50893 1tat:A (3.0) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50894 1tat:B (3.0) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003824 ... P00508 8120903
    50895 1tau:A (3.0) BS01 dna 2.7.7.7 GO:0001882 ... P19821 8717047
    50896 1tau:A (3.0) BS02 dna 2.7.7.7 GO:0001882 ... P19821 8717047
    50897 1tau:A (3.0) BS03 ZN 2.7.7.7 GO:0001882 ... P19821 8717047
    50898 1taw:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9300481
    50899 1taz:A (1.77) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 15260978
    50900 1tb0:X (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15667203
    50901 1tb3:A (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50902 1tb3:B (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50903 1tb3:C (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50904 1tb3:D (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50905 1tb3:E (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50906 1tb3:F (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50907 1tb3:G (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50908 1tb3:H (2.3) BS01 FMN 1.1.3.15 GO:0001561 ... Q07523 15683236
    50909 1tb4:A (2.15) BS01 PEJ 1.2.1.11 GO:0004073 ... P44801 15583380 MOAD: Ki=0.2mM
    50910 1tb5:A (2.15) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 15260978
    50911 1tb5:A (2.15) BS02 AMP 3.1.4.53 GO:0004114 ... Q07343 15260978
    50912 1tb5:B (2.15) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 15260978
    50913 1tb5:B (2.15) BS02 AMP 3.1.4.53 GO:0004114 ... Q07343 15260978
    50914 1tb6:H (2.5) BS01 GU0 3.4.21.5 GO:0004252 ... P00734 15311269
    50915 1tb6:H (2.5) BS02 GU6 3.4.21.5 GO:0004252 ... P00734 15311269
    50916 1tb6:H (2.5) BS03 GU4 3.4.21.5 GO:0004252 ... P00734 15311269
    50917 1tb6:I (2.5) BS01 GU3 ? GO:0002020 ... P01008 15311269
    50918 1tb6:I (2.5) BS02 GU2 ? GO:0002020 ... P01008 15311269
    50919 1tb6:I (2.5) BS03 GU6 ? GO:0002020 ... P01008 15311269
    50920 1tb6:I (2.5) BS04 GU1 ? GO:0002020 ... P01008 15311269
    50921 1tb6:I (2.5) BS05 GU5 ? GO:0002020 ... P01008 15311269
    50922 1tb7:A (1.63) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15260978
    50923 1tb7:A (1.63) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 15260978
    50924 1tb7:B (1.63) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15260978
    50925 1tb7:B (1.63) BS02 AMP 3.1.4.53 GO:0004114 ... Q08499 15260978
    50926 1tbb:A (1.6) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15260978
    50927 1tbb:A (1.6) BS02 ROL 3.1.4.53 GO:0004114 ... Q08499 15260978
    50928 1tbb:B (1.6) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 15260978
    50929 1tbb:B (1.6) BS02 ROL 3.1.4.53 GO:0004114 ... Q08499 15260978
    50930 1tbf:A (1.3) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 15260978
    50931 1tbf:A (1.3) BS02 VIA 3.1.4.35 GO:0004114 ... O76074 15260978 BindingDB: IC50=2.2nM, Ki=1.9nM, EC50=8.7nM
    50932 1tbh:A (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50933 1tbh:A (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50934 1tbh:B (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50935 1tbh:B (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50936 1tbh:C (2.7) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50937 1tbh:C (2.7) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50938 1tbj:A (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50939 1tbj:A (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50940 1tbj:B (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50941 1tbj:B (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50942 1tbj:C (2.8) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50943 1tbj:C (2.8) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50944 1tbl:A (3.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50945 1tbl:A (3.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50946 1tbl:B (3.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50947 1tbl:B (3.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50948 1tbl:C (3.1) BS01 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50949 1tbl:C (3.1) BS02 MN 3.5.3.1 GO:0000050 ... P07824 16266687
    50950 1tbn:A (-1.00) BS01 ZN 2.7.11.13 N/A P63319 9271501
    50951 1tbn:A (-1.00) BS02 ZN 2.7.11.13 N/A P63319 9271501
    50952 1tbo:A (-1.00) BS01 ZN 2.7.11.13 N/A P63319 9271501
    50953 1tbo:A (-1.00) BS02 ZN 2.7.11.13 N/A P63319 9271501
    50954 1tbt:X (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15667203
    50955 1tbw:A (2.15) BS01 AMP ? GO:0005524 ... P41148 15292259
    50956 1tbw:B (2.15) BS01 AMP ? GO:0005524 ... P41148 15292259
    50957 1tbz:H (2.3) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8913620
    50958 1tbz:H (2.3) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 8913620
    50959 1tbz:H (2.3) BS03 00Q 3.4.21.5 GO:0004252 ... P00734 8913620 PDBbind: -logKd/Ki=9.80, Ki=0.16nM
    50960 1tc0:A (2.2) BS01 ATP ? GO:0005524 ... P41148 15292259
    50961 1tc0:B (2.2) BS01 ATP ? GO:0005524 ... P41148 15292259
    50962 1tc1:A (1.41) BS01 FMB 2.4.2.8 GO:0000166 ... Q4DRC4 9790669 MOAD: ic50>2mM
    PDBbind: -logKd/Ki=2.70, IC50>2mM
    50963 1tc1:B (1.41) BS01 FMB 2.4.2.8 GO:0000166 ... Q4DRC4 9790669 MOAD: ic50>2mM
    50964 1tc2:A (1.81) BS01 7HP 2.4.2.8 GO:0000166 ... Q4DRC4 9860824
    50965 1tc2:A (1.81) BS02 PRP 2.4.2.8 GO:0000166 ... Q4DRC4 9860824
    50966 1tc2:B (1.81) BS01 7HP 2.4.2.8 GO:0000166 ... Q4DRC4 9860824
    50967 1tc2:B (1.81) BS02 PRP 2.4.2.8 GO:0000166 ... Q4DRC4 9860824
    50968 1tc3:C (2.45) BS01 dna ? GO:0003677 ... P34257 9312061
    50969 1tc3:C (2.45) BS02 dna ? GO:0003677 ... P34257 9312061
    50970 1tc6:A (1.87) BS01 ADP ? GO:0005524 ... P41148 15292259
    50971 1tc6:B (1.87) BS01 ADP ? GO:0005524 ... P41148 15292259
    50972 1tc8:A (2.7) BS01 NA 3.1.1.4 GO:0004623 ... Q6SLM2 15659372
    50973 1tc8:A (2.7) BS02 TDA 3.1.1.4 GO:0004623 ... Q6SLM2 15659372
    50974 1tcb:B (2.1) BS01 BOG 3.1.1.3 GO:0004806 ... P41365 8087556
    50975 1tcc:B (2.5) BS01 BOG 3.1.1.3 GO:0004806 ... P41365 8087556
    50976 1tce:A (-1.00) BS01 peptide ? N/A P29353 7544002
    50977 1tcf:A (1.9) BS01 CA ? GO:0005509 ... P02586 10651267
    50978 1tcf:A (1.9) BS02 CA ? GO:0005509 ... P02586 10651267
    50979 1tcf:A (1.9) BS03 CA ? GO:0005509 ... P02586 10651267
    50980 1tcf:A (1.9) BS04 CA ? GO:0005509 ... P02586 10651267
    50981 1tcm:A (2.2) BS01 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    50982 1tcm:A (2.2) BS02 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    50983 1tcm:B (2.2) BS01 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    50984 1tcm:B (2.2) BS02 CA 2.4.1.19 GO:0003824 ... P43379 8955113
    50985 1tco:A (2.5) BS01 ZN 3.1.3.16 GO:0016787 ... P48452 7543369
    50986 1tco:A (2.5) BS02 FE 3.1.3.16 GO:0016787 ... P48452 7543369
    50987 1tco:A (2.5) BS03 FK5 3.1.3.16 GO:0016787 ... P48452 7543369
    50988 1tco:B (2.5) BS01 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    50989 1tco:B (2.5) BS02 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    50990 1tco:B (2.5) BS03 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    50991 1tco:B (2.5) BS04 CA 3.1.3.16 GO:0005509 ... P63099 7543369
    50992 1tco:B (2.5) BS05 FK5 3.1.3.16 GO:0005509 ... P63099 7543369
    50993 1tco:C (2.5) BS01 FK5 5.2.1.8 GO:0000413 ... P18203 7543369
    50994 1tcr:B (2.5) BS01 FUC N/A N/A N/A 8824178
    50995 1tcs:A (1.7) BS01 NDP 3.2.2.22 GO:0006952 ... P09989 7634073
    50996 1tcu:A (2.0) BS01 ACT 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    50997 1tcu:A (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    50998 1tcu:B (2.0) BS01 ACT 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    50999 1tcu:B (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... Q9BMI9 16182308
    51000 1tcu:C (2.0) BS01 ACT 2.4.2.1 GO:0003824 ... Q9BMI9 16182308

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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