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BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49201 1smy:C (2.7) BS11 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49202 1smy:C (2.7) BS12 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49203 1smy:C (2.7) BS13 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49204 1smy:C (2.7) BS14 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49205 1smy:C (2.7) BS15 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49206 1smy:C (2.7) BS16 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49207 1smy:C (2.7) BS17 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49208 1smy:C (2.7) BS18 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49209 1smy:C (2.7) BS19 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49210 1smy:C (2.7) BS20 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49211 1smy:C (2.7) BS21 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49212 1smy:C (2.7) BS22 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49213 1smy:C (2.7) BS23 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49214 1smy:C (2.7) BS24 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49215 1smy:C (2.7) BS25 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49216 1smy:C (2.7) BS26 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49217 1smy:C (2.7) BS27 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49218 1smy:C (2.7) BS28 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49219 1smy:C (2.7) BS29 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49220 1smy:C (2.7) BS30 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49221 1smy:C (2.7) BS31 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49222 1smy:C (2.7) BS32 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49223 1smy:C (2.7) BS33 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49224 1smy:C (2.7) BS34 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49225 1smy:C (2.7) BS35 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49226 1smy:C (2.7) BS36 MG 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49227 1smy:D (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49228 1smy:D (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49229 1smy:D (2.7) BS03 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49230 1smy:D (2.7) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49231 1smy:D (2.7) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49232 1smy:D (2.7) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49233 1smy:D (2.7) BS07 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49234 1smy:D (2.7) BS08 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49235 1smy:D (2.7) BS09 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49236 1smy:D (2.7) BS10 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49237 1smy:D (2.7) BS11 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49238 1smy:D (2.7) BS12 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49239 1smy:D (2.7) BS13 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49240 1smy:D (2.7) BS14 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49241 1smy:D (2.7) BS15 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49242 1smy:D (2.7) BS16 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49243 1smy:D (2.7) BS17 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49244 1smy:D (2.7) BS18 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49245 1smy:D (2.7) BS19 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49246 1smy:D (2.7) BS20 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49247 1smy:D (2.7) BS21 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49248 1smy:D (2.7) BS22 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49249 1smy:D (2.7) BS23 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49250 1smy:D (2.7) BS24 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49251 1smy:D (2.7) BS25 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49252 1smy:D (2.7) BS26 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49253 1smy:D (2.7) BS27 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49254 1smy:D (2.7) BS28 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49255 1smy:D (2.7) BS29 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49256 1smy:D (2.7) BS30 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49257 1smy:D (2.7) BS31 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49258 1smy:D (2.7) BS32 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49259 1smy:D (2.7) BS33 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49260 1smy:D (2.7) BS34 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49261 1smy:D (2.7) BS35 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49262 1smy:D (2.7) BS36 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49263 1smy:D (2.7) BS37 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49264 1smy:D (2.7) BS38 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49265 1smy:D (2.7) BS39 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49266 1smy:D (2.7) BS40 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49267 1smy:D (2.7) BS41 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49268 1smy:D (2.7) BS42 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49269 1smy:D (2.7) BS43 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49270 1smy:D (2.7) BS44 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49271 1smy:D (2.7) BS45 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49272 1smy:D (2.7) BS46 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49273 1smy:D (2.7) BS47 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49274 1smy:D (2.7) BS48 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49275 1smy:D (2.7) BS49 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49276 1smy:D (2.7) BS50 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49277 1smy:D (2.7) BS51 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49278 1smy:D (2.7) BS52 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49279 1smy:D (2.7) BS53 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49280 1smy:E (2.7) BS01 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    49281 1smy:E (2.7) BS02 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    49282 1smy:E (2.7) BS03 MG 2.7.7.6 GO:0000428 ... Q8RQE7 15109491
    49283 1smy:F (2.7) BS01 MG ? GO:0003677 ... Q72L95 15109491
    49284 1smy:F (2.7) BS02 MG ? GO:0003677 ... Q72L95 15109491
    49285 1smy:F (2.7) BS03 MG ? GO:0003677 ... Q72L95 15109491
    49286 1smy:F (2.7) BS04 MG ? GO:0003677 ... Q72L95 15109491
    49287 1smy:F (2.7) BS05 MG ? GO:0003677 ... Q72L95 15109491
    49288 1smy:F (2.7) BS06 MG ? GO:0003677 ... Q72L95 15109491
    49289 1smy:F (2.7) BS07 MG ? GO:0003677 ... Q72L95 15109491
    49290 1smy:F (2.7) BS08 MG ? GO:0003677 ... Q72L95 15109491
    49291 1smy:F (2.7) BS09 MG ? GO:0003677 ... Q72L95 15109491
    49292 1smy:F (2.7) BS10 MG ? GO:0003677 ... Q72L95 15109491
    49293 1smy:F (2.7) BS11 MG ? GO:0003677 ... Q72L95 15109491
    49294 1smy:F (2.7) BS12 MG ? GO:0003677 ... Q72L95 15109491
    49295 1smy:F (2.7) BS13 MG ? GO:0003677 ... Q72L95 15109491
    49296 1smy:F (2.7) BS14 MG ? GO:0003677 ... Q72L95 15109491
    49297 1smy:M (2.7) BS01 G4P 2.7.7.6 GO:0000428 ... Q8RQE9 15109491
    49298 1smy:N (2.7) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49299 1smy:N (2.7) BS02 MG 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49300 1smy:N (2.7) BS03 G4P 2.7.7.6 GO:0000287 ... Q8RQE8 15109491
    49301 1sn0:A (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    49302 1sn0:B (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    49303 1sn0:C (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    49304 1sn0:D (1.9) BS01 T44 ? GO:0005179 ... Q9PTT3 15082720
    49305 1sn5:B (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    49306 1sn5:C (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    49307 1sn5:D (1.9) BS01 T3 ? GO:0005179 ... Q9PTT3 15082720
    49308 1sn7:A (2.0) BS01 CA ? GO:0004252 ... Q8GB88 15014068
    49309 1snc:A (1.65) BS01 CA 3.1.31.1 GO:0003676 ... P00644 2780539
    49310 1snc:A (1.65) BS02 THP 3.1.31.1 GO:0003676 ... P00644 2780539
    49311 1snf:A (1.85) BS01 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49312 1snf:A (1.85) BS02 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49313 1snf:B (1.85) BS01 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49314 1snf:C (1.85) BS01 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49315 1snf:C (1.85) BS02 UMP 3.6.1.23 GO:0000287 ... P9WNS5 15276840
    49316 1snk:A (2.4) BS01 MYE 3.4.22.38 GO:0006508 ... P43235 15177446 PDBbind: -logKd/Ki=9.60, IC50=0.25nM
    BindingDB: IC50=0.250000nM
    49317 1snm:A (1.74) BS01 CA 3.1.31.1 GO:0003676 ... P00644 2397218
    49318 1snm:A (1.74) BS02 THP 3.1.31.1 GO:0003676 ... P00644 2397218
    49319 1snn:A (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    49320 1snn:A (1.55) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 15213409
    49321 1snn:A (1.55) BS03 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    49322 1snn:A (1.55) BS04 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    49323 1snn:A (1.55) BS05 CA 4.1.99.12 GO:0000287 ... Q60364 15213409
    49324 1snn:B (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    49325 1snn:B (1.55) BS02 ZN 4.1.99.12 GO:0000287 ... Q60364 15213409
    49326 1snr:A (1.31) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    49327 1snr:A (1.31) BS02 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    49328 1snr:A (1.31) BS03 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    49329 1snr:A (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    49330 1snr:B (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    49331 1snr:B (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    49332 1snr:B (1.31) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    49333 1snr:B (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    49334 1snr:C (1.31) BS01 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    49335 1snr:C (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    49336 1snr:C (1.31) BS03 CU 1.7.2.1 GO:0005507 ... P38501 15131305
    49337 1snr:C (1.31) BS04 NO 1.7.2.1 GO:0005507 ... P38501 15131305
    49338 1snu:A (2.5) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749
    49339 1snu:B (2.5) BS01 STU 2.7.10.2 GO:0004672 ... Q08881 14766749
    49340 1sny:A (1.75) BS01 NAP 1.1.1.184 GO:0000166 ... Q9W3H4 15364585
    49341 1so0:A (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    49342 1so0:B (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    49343 1so0:C (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    49344 1so0:D (2.3) BS01 GAL 5.1.3.3 GO:0003824 ... Q96C23 15026423
    49345 1so2:A (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49346 1so2:A (2.4) BS02 HG9 3.1.4.17 GO:0004114 ... Q13370 15147193
    49347 1so2:A (2.4) BS03 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    PDBbind: -logKd/Ki=9.57, IC50=0.27nM
    49348 1so2:B (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49349 1so2:B (2.4) BS02 HG9 3.1.4.17 GO:0004114 ... Q13370 15147193
    49350 1so2:B (2.4) BS03 HG9 3.1.4.17 GO:0004114 ... Q13370 15147193
    49351 1so2:B (2.4) BS04 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    49352 1so2:C (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49353 1so2:C (2.4) BS02 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    49354 1so2:D (2.4) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49355 1so2:D (2.4) BS02 666 3.1.4.17 GO:0004114 ... Q13370 15147193 MOAD: ic50=0.27nM
    49356 1so3:A (1.9) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49357 1so3:A (1.9) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49358 1so3:B (1.9) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49359 1so3:B (1.9) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49360 1so4:A (1.7) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49361 1so4:A (1.7) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49362 1so4:B (1.7) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49363 1so4:B (1.7) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49364 1so5:A (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49365 1so5:A (1.8) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49366 1so5:B (1.8) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49367 1so5:B (1.8) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49368 1so6:A (1.902) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49369 1so6:A (1.902) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49370 1so6:B (1.902) BS01 MG 4.1.1.85 GO:0000287 ... P39304 15157078
    49371 1so6:B (1.902) BS02 TX4 4.1.1.85 GO:0000287 ... P39304 15157078
    49372 1sof:A (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49373 1sof:A (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49374 1sof:A (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49375 1sof:B (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49376 1sof:B (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49377 1sof:B (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49378 1sof:C (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49379 1sof:C (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49380 1sof:C (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49381 1sof:D (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49382 1sof:D (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49383 1sof:D (2.6) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49384 1sof:E (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49385 1sof:E (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49386 1sof:E (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49387 1sof:F (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49388 1sof:F (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49389 1sof:F (2.6) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49390 1sof:G (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49391 1sof:G (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49392 1sof:G (2.6) BS03 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49393 1sof:H (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... P22759 15327981
    49394 1sof:H (2.6) BS02 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49395 1sof:H (2.6) BS03 FE2 1.16.3.1 GO:0004322 ... P22759 15327981
    49396 1sog:A (1.85) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 15236591
    49397 1soj:A (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49398 1soj:B (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49399 1soj:C (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193
    49400 1soj:D (2.9) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 15147193

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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