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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 903398 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44201 1qsh:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    44202 1qsh:B (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    44203 1qsh:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    44204 1qsh:D (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    44205 1qsi:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    44206 1qsi:A (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    44207 1qsi:B (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    44208 1qsi:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    44209 1qsi:C (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    44210 1qsi:D (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    44211 1qsl:A (2.2) BS01 dna 2.7.7.7 GO:0003676 ... P00582 10631518
    44212 1qsl:A (2.2) BS02 EU 2.7.7.7 GO:0003676 ... P00582 10631518
    44213 1qsm:A (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    44214 1qsm:B (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    44215 1qsm:C (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    44216 1qsm:D (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    44217 1qsn:A (2.2) BS01 peptide 2.3.1.48 GO:0004402 ... Q27198 10485713
    44218 1qsn:A (2.2) BS02 COA 2.3.1.48 GO:0004402 ... Q27198 10485713
    44219 1qsr:A (2.0) BS01 ACO 2.3.1.48 GO:0004402 ... Q27198 10485713
    44220 1qss:A (2.3) BS01 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    44221 1qss:A (2.3) BS02 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    44222 1qss:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    44223 1qss:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    44224 1qss:A (2.3) BS05 DG3 2.7.7.7 GO:0001882 ... P19821 10449720
    44225 1qsu:A (1.75) BS01 peptide N/A N/A N/A 10966815
    44226 1qsu:B (1.75) BS01 peptide N/A N/A N/A 10966815
    44227 1qsy:A (2.3) BS01 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    44228 1qsy:A (2.3) BS02 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    44229 1qsy:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    44230 1qsy:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    44231 1qsy:A (2.3) BS05 DDS 2.7.7.7 GO:0001882 ... P19821 10449720
    44232 1qt1:A (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    44233 1qt1:A (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    44234 1qt1:B (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    44235 1qt1:B (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    44236 1qt9:A (1.3) BS01 FES ? GO:0005515 ... P0A3C8 10625442
    44237 1qti:A (2.5) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 11119642 PDBbind: -logKd/Ki=6.44, IC50=0.36uM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    44238 1qtk:A (2.03) BS01 KR 3.2.1.17 GO:0003796 ... P00698 9443341
    44239 1qtm:A (2.3) BS01 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    44240 1qtm:A (2.3) BS02 dna 2.7.7.7 GO:0001882 ... P19821 10449720
    44241 1qtm:A (2.3) BS03 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    44242 1qtm:A (2.3) BS04 MG 2.7.7.7 GO:0001882 ... P19821 10449720
    44243 1qtm:A (2.3) BS05 TTP 2.7.7.7 GO:0001882 ... P19821 10449720
    44244 1qtn:A (1.2) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508785
    44245 1qtn:B (1.2) BS01 peptide 3.4.22.61 GO:0004197 ... Q14790 10508785
    44246 1qtq:A (2.25) BS01 rna 6.1.1.18 GO:0000166 ... P00962 9562563 PDBbind: Ki=1.32uM
    44247 1qtq:A (2.25) BS02 QSI 6.1.1.18 GO:0000166 ... P00962 9562563
    44248 1qtw:A (1.02) BS01 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44249 1qtw:A (1.02) BS02 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44250 1qtw:A (1.02) BS03 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44251 1qtx:A (1.65) BS01 peptide ? GO:0005509 ... A0MMD0 N/A
    44252 1qtx:A (1.65) BS02 CA ? GO:0005509 ... A0MMD0 N/A
    44253 1qtx:A (1.65) BS03 CA ? GO:0005509 ... A0MMD0 N/A
    44254 1qtx:A (1.65) BS04 CA ? GO:0005509 ... A0MMD0 N/A
    44255 1qtx:A (1.65) BS05 CA ? GO:0005509 ... A0MMD0 N/A
    44256 1qu0:A (2.35) BS01 CA ? N/A Q60675 10619025
    44257 1qu0:A (2.35) BS02 SO4 ? N/A Q60675 10619025
    44258 1qu0:B (2.35) BS01 CA ? N/A Q60675 10619025
    44259 1qu0:C (2.35) BS01 CA ? N/A Q60675 10619025
    44260 1qu0:C (2.35) BS02 SO4 ? N/A Q60675 10619025
    44261 1qu0:D (2.35) BS01 CA ? N/A Q60675 10619025
    44262 1qu0:D (2.35) BS02 SO4 ? N/A Q60675 10619025
    44263 1qu0:D (2.35) BS03 SO4 ? N/A Q60675 10619025
    44264 1qu2:A (2.2) BS01 rna 6.1.1.5 GO:0000049 ... P41972 10446055
    44265 1qu2:A (2.2) BS02 ZN 6.1.1.5 GO:0000049 ... P41972 10446055
    44266 1qu2:A (2.2) BS03 MRC 6.1.1.5 GO:0000049 ... P41972 10446055 BindingDB: IC50=20000nM
    44267 1qu3:A (2.9) BS01 rna 6.1.1.5 GO:0000049 ... P41972 10446055
    44268 1qu3:A (2.9) BS02 MRC 6.1.1.5 GO:0000049 ... P41972 10446055 BindingDB: IC50=20000nM
    44269 1qu4:A (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    44270 1qu4:B (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    44271 1qu4:C (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    44272 1qu4:D (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    44273 1qua:A (2.2) BS01 ZN 3.4.24.- GO:0004222 ... P60244 10531480
    44274 1que:A (1.8) BS01 SO4 1.18.1.2 GO:0016491 ... P21890 8890910
    44275 1que:A (1.8) BS02 FAD 1.18.1.2 GO:0016491 ... P21890 8890910
    44276 1quf:A (2.25) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 8890910
    44277 1quf:A (2.25) BS02 NAP 1.18.1.2 GO:0016491 ... P21890 8890910
    44278 1qui:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    44279 1quj:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    44280 1quk:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    44281 1qul:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    44282 1qum:A (1.55) BS01 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44283 1qum:A (1.55) BS02 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44284 1qum:A (1.55) BS03 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44285 1qum:A (1.55) BS04 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44286 1qum:A (1.55) BS05 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44287 1qum:A (1.55) BS06 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    44288 1qur:H (2.0) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10504391
    44289 1qur:H (2.0) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10504391
    44290 1qv0:A (1.1) BS01 CZH 1.13.12.5 GO:0005509 ... Q27709 14592432
    44291 1qv1:A (1.1) BS01 CA 1.13.12.5 GO:0005509 ... Q27709 14592432
    44292 1qv1:A (1.1) BS02 CZH 1.13.12.5 GO:0005509 ... Q27709 14592432
    44293 1qv6:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44294 1qv6:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44295 1qv6:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    44296 1qv6:A (1.8) BS04 24B 1.1.1.1 GO:0004022 ... P00327 15023053
    44297 1qv6:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44298 1qv6:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44299 1qv6:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    44300 1qv6:B (1.8) BS04 24B 1.1.1.1 GO:0004022 ... P00327 15023053
    44301 1qv7:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44302 1qv7:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44303 1qv7:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    44304 1qv7:A (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 15023053
    44305 1qv7:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44306 1qv7:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    44307 1qv7:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    44308 1qv7:B (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 15023053
    44309 1qvf:1 (3.1) BS01 rna ? GO:0003735 ... P22452 14561884
    44310 1qvf:2 (3.1) BS01 rna ? GO:0000049 ... P32411 14561884
    44311 1qvf:2 (3.1) BS02 rna ? GO:0000049 ... P32411 14561884
    44312 1qvf:2 (3.1) BS03 MG ? GO:0000049 ... P32411 14561884
    44313 1qvf:A (3.1) BS01 rna ? GO:0002181 ... P20276 14561884
    44314 1qvf:A (3.1) BS02 MG ? GO:0002181 ... P20276 14561884
    44315 1qvf:B (3.1) BS01 rna ? GO:0003723 ... P20279 14561884
    44316 1qvf:C (3.1) BS01 rna ? GO:0003723 ... P12735 14561884
    44317 1qvf:D (3.1) BS01 rna ? GO:0000049 ... P14124 14561884
    44318 1qvf:D (3.1) BS02 rna ? GO:0000049 ... P14124 14561884
    44319 1qvf:E (3.1) BS01 rna ? GO:0002181 ... P14135 14561884
    44320 1qvf:F (3.1) BS01 rna ? GO:0001682 ... P12743 14561884
    44321 1qvf:H (3.1) BS01 rna ? GO:0000027 ... P60617 14561884
    44322 1qvf:I (3.1) BS01 rna ? GO:0003729 ... P29198 14561884
    44323 1qvf:J (3.1) BS01 rna ? GO:0003735 ... P22450 14561884
    44324 1qvf:K (3.1) BS01 rna ? GO:0003735 ... P12737 14561884
    44325 1qvf:L (3.1) BS01 rna ? GO:0002181 ... P60618 14561884
    44326 1qvf:M (3.1) BS01 rna ? GO:0000027 ... P14123 14561884
    44327 1qvf:M (3.1) BS02 rna ? GO:0000027 ... P14123 14561884
    44328 1qvf:N (3.1) BS01 rna ? GO:0003723 ... P12733 14561884
    44329 1qvf:O (3.1) BS01 rna ? GO:0003723 ... P14119 14561884
    44330 1qvf:P (3.1) BS01 rna ? GO:0003735 ... P12734 14561884
    44331 1qvf:P (3.1) BS02 rna ? GO:0003735 ... P12734 14561884
    44332 1qvf:Q (3.1) BS01 rna ? GO:0002181 ... P10970 14561884
    44333 1qvf:R (3.1) BS01 rna ? GO:0000027 ... P12732 14561884
    44334 1qvf:S (3.1) BS01 rna ? GO:0002181 ... P10972 14561884
    44335 1qvf:S (3.1) BS02 MG ? GO:0002181 ... P10972 14561884
    44336 1qvf:T (3.1) BS01 rna ? GO:0003735 ... P14116 14561884
    44337 1qvf:U (3.1) BS01 rna ? GO:0003735 ... P10971 14561884
    44338 1qvf:V (3.1) BS01 rna ? GO:0000463 ... P14121 14561884
    44339 1qvf:V (3.1) BS02 rna ? GO:0000463 ... P14121 14561884
    44340 1qvf:W (3.1) BS01 rna ? GO:0002181 ... P18138 14561884
    44341 1qvf:X (3.1) BS01 rna ? GO:0000166 ... P12736 14561884
    44342 1qvf:X (3.1) BS02 MG ? GO:0000166 ... P12736 14561884
    44343 1qvf:Y (3.1) BS01 rna ? GO:0003735 ... P60619 14561884
    44344 1qvf:Z (3.1) BS01 rna ? GO:0003723 ... P32410 14561884
    44345 1qvg:1 (2.9) BS01 rna ? GO:0003735 ... P22452 14561884
    44346 1qvg:2 (2.9) BS01 rna ? GO:0000049 ... P32411 14561884
    44347 1qvg:2 (2.9) BS02 rna ? GO:0000049 ... P32411 14561884
    44348 1qvg:2 (2.9) BS03 MG ? GO:0000049 ... P32411 14561884
    44349 1qvg:A (2.9) BS01 rna ? GO:0002181 ... P20276 14561884
    44350 1qvg:B (2.9) BS01 rna ? GO:0003723 ... P20279 14561884
    44351 1qvg:C (2.9) BS01 rna ? GO:0003723 ... P12735 14561884
    44352 1qvg:D (2.9) BS01 rna ? GO:0000049 ... P14124 14561884
    44353 1qvg:D (2.9) BS02 rna ? GO:0000049 ... P14124 14561884
    44354 1qvg:E (2.9) BS01 rna ? GO:0002181 ... P14135 14561884
    44355 1qvg:F (2.9) BS01 rna ? GO:0001682 ... P12743 14561884
    44356 1qvg:H (2.9) BS01 rna ? GO:0000027 ... P60617 14561884
    44357 1qvg:I (2.9) BS01 rna ? GO:0003729 ... P29198 14561884
    44358 1qvg:J (2.9) BS01 rna ? GO:0003735 ... P22450 14561884
    44359 1qvg:K (2.9) BS01 rna ? GO:0003735 ... P12737 14561884
    44360 1qvg:L (2.9) BS01 rna ? GO:0002181 ... P60618 14561884
    44361 1qvg:M (2.9) BS01 rna ? GO:0000027 ... P14123 14561884
    44362 1qvg:M (2.9) BS02 rna ? GO:0000027 ... P14123 14561884
    44363 1qvg:N (2.9) BS01 rna ? GO:0003723 ... P12733 14561884
    44364 1qvg:O (2.9) BS01 rna ? GO:0003723 ... P14119 14561884
    44365 1qvg:P (2.9) BS01 rna ? GO:0003735 ... P12734 14561884
    44366 1qvg:P (2.9) BS02 rna ? GO:0003735 ... P12734 14561884
    44367 1qvg:Q (2.9) BS01 rna ? GO:0002181 ... P10970 14561884
    44368 1qvg:R (2.9) BS01 rna ? GO:0000027 ... P12732 14561884
    44369 1qvg:S (2.9) BS01 rna ? GO:0002181 ... P10972 14561884
    44370 1qvg:S (2.9) BS02 MG ? GO:0002181 ... P10972 14561884
    44371 1qvg:T (2.9) BS01 rna ? GO:0003735 ... P14116 14561884
    44372 1qvg:U (2.9) BS01 rna ? GO:0003735 ... P10971 14561884
    44373 1qvg:V (2.9) BS01 rna ? GO:0000463 ... P14121 14561884
    44374 1qvg:V (2.9) BS02 rna ? GO:0000463 ... P14121 14561884
    44375 1qvg:W (2.9) BS01 rna ? GO:0002181 ... P18138 14561884
    44376 1qvg:X (2.9) BS01 rna ? GO:0000166 ... P12736 14561884
    44377 1qvg:X (2.9) BS02 MG ? GO:0000166 ... P12736 14561884
    44378 1qvg:Y (2.9) BS01 rna ? GO:0003735 ... P60619 14561884
    44379 1qvg:Z (2.9) BS01 rna ? GO:0003723 ... P32410 14561884
    44380 1qvi:A (2.54) BS01 MG ? GO:0003774 ... P24733 14656445
    44381 1qvi:A (2.54) BS02 ADP ? GO:0003774 ... P24733 14656445
    44382 1qvi:Y (2.54) BS01 MG ? GO:0005509 ... P13543 14656445
    44383 1qvi:Z (2.54) BS01 CA ? GO:0005509 ... P07291 14656445
    44384 1qvj:A (1.91) BS01 RP5 3.6.1.13 GO:0047631 ... Q9BW91 12948489
    44385 1qvn:A (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    44386 1qvn:B (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    44387 1qvn:C (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    44388 1qvn:C (2.7) BS02 FRI ? GO:0002250 ... P60568 17032757
    44389 1qvn:D (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    44390 1qvo:A (2.22) BS01 peptide ? N/A P04439 15128805
    44391 1qvo:D (2.22) BS01 peptide ? N/A P04439 15128805
    44392 1qvr:A (3.0) BS01 ANP ? GO:0005515 ... Q9RA63 14567920
    44393 1qvr:A (3.0) BS02 ANP ? GO:0005515 ... Q9RA63 14567920
    44394 1qvr:B (3.0) BS01 ANP ? GO:0005515 ... Q9RA63 14567920
    44395 1qvr:B (3.0) BS02 ANP ? GO:0005515 ... Q9RA63 14567920
    44396 1qvr:C (3.0) BS01 ANP ? GO:0005515 ... Q9RA63 14567920
    44397 1qvr:C (3.0) BS02 ANP ? GO:0005515 ... Q9RA63 14567920
    44398 1qvr:C (3.0) BS03 ANP ? GO:0005515 ... Q9RA63 14567920
    44399 1qvt:A (2.89) BS01 PRL ? GO:0003677 ... P0A0N4 15257299 PDBbind: -logKd/Ki=4.38, Kd=42uM
    44400 1qvu:A (2.96) BS01 ET ? GO:0003677 ... P0A0N4 15257299
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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